ALBERT

Description: Organic matter (OM) plays a major role in both terrestrial and oceanic biogeochemical cycles. The amount of carbon stored in these systems is far greater than that of carbon dioxide (CO 2 ) in the atmosphere, and annual fluxes of CO 2 from these pools to the atmosphere exceed those from fossil fuel combustion. Understanding the processes that determine the fate of detrital material is important for predicting the effects that climate change will have on feedbacks to the global carbon cycle. However, Earth System Models (ESMs) typically utilize very simple formulations of processes affecting the mineralization and storage of detrital OM. Recent changes in our view of the nature of this material and the factors controlling its transformation have yet to find their way into models. In this review, we highlight the current understanding of the role and cycling of detrital OM in terrestrial and marine systems and examine how this pool of material is represented in ESMs. We include a discussion of the different mineralization pathways available as organic matter moves from soils, through inland waters to coastal systems and ultimately into open ocean environments. We argue that there is strong commonality between aspects of OM transformation in both terrestrial and marine systems, and that our respective scientific communities would benefit from closer collaboration. This article is protected by copyright. All rights reserved.

Description: Recent studies have suggested that changes in serum phosphate levels influence pathological states associated with aging such as cancer, bone metabolism, and cardiovascular function, even in individuals with normal renal function. The causes are only beginning to be elucidated but are likely a combination of endocrine, paracrine, autocrine, and cell autonomous effects. We have used an integrated quantitative biology approach, combining transcriptomics and proteomics to define a multi-phase, extracellular phosphate-induced, signaling network in pre-osteoblasts as well as primary human and mouse mesenchymal stromal cells. We identified a rapid mitogenic response stimulated by elevated phosphate that results in the induction of immediate early genes including c-fos . The mechanism of activation requires FGF receptor signaling followed by stimulation of N-ras and activation of AP-1 and serum response elements. A distinct long-term response also requires FGF receptor signaling and results in N-ras activation and expression of genes and secretion of proteins involved in matrix regulation, calcification, and angiogenesis. The late response is synergistically enhanced by addition of FGF23 peptide. The intermediate phase results in increased oxidative phosphorylation and ATP production and is necessary for the late response providing a functional link between the phases. Collectively, the results define elevated phosphate, as a mitogen and define specific mechanisms by which phosphate stimulates proliferation and matrix regulation. Our approach provides a comprehensive understanding of the cellular response to elevated extracellular phosphate, functionally connecting temporally coordinated signaling, transcriptional, and metabolic events with changes in long-term cell behavior. J. Cell. Physiol. © 2012 Wiley Periodicals, Inc.

Description: Abstract Denitrification in the anoxic sediments of the Santa Barbara Basin has been well documented in the historic and modern record, but the regulation of and frequency with which denitrification occurs in the overlying water column are less understood. Since 2004, the magnitude and speciation of redox active nitrogen species in bottom waters have changed markedly. Most notable are periods of decreased nitrate and increased nitrite concentrations. Here we examine these changes in nitrogen cycling as recorded by the stable isotopes of dissolved nitrate from 2010–2016. When compared to previous studies, our data identify an increase in water column denitrification in the bottom waters of the basin. Observations from inside the basin as well as data from the wider California Current Ecosystem implicate a long‐term trend of decreasing oxygen concentrations as the driver for these observed changes, with ramifications for local benthic communities and regional nitrogen loss.

Description: Recent research into flood modelling has primarily concentrated on the simulation of inundation flow without considering the influences of channel morphology. River channels are often represented by a simplified geometry that is implicitly assumed to remain unchanged during flood simulations. However, field evidence demonstrates that significant morphological changes can occur during floods to mobilise the boundary sediments. Despite this, the effect of channel morphology on model results has been largely unexplored. To address this issue, the impact of channel cross-section geometry and channel long-profile variability on flood dynamics is examined using an ensemble of a 1D-2D hydraulic model (LISFLOOD-FP) of the ~1:2000 year recurrence interval floods in Cockermouth, UK, within an uncertainty framework. A series of simulated scenarios of channel erosional changes were constructed based on a simple velocity based model of critical entrainment. A Monte-Carlo simulation framework was used to quantify the effects of this channel morphology together with variations in the channel and floodplain roughness coefficients, grain size characteristics, and critical shear stress on measures of flood inundation. The results showed that the bed elevation modifications generated by the simplistic equations reflected an approximation of the observed patterns of spatial erosion that enveloped observed erosion depths. The effect of uncertainty on channel long-profile variability only affected the local flood dynamics and did not significantly affect the friction sensitivity and flood inundation mapping. The results imply that hydraulic models generally do not need to account for within event morphodynamic changes of the type and magnitude of event modelled, as these have a negligible impact that is smaller than other uncertainties, e.g. boundary conditions. Instead morphodynamic change needs to happen over a series of events to become large enough to change the hydrodynamics of floods in supply limited gravel-bed rivers like the one used in this research. This article is protected by copyright. All rights reserved.

Description: Abstract Nitrification, the microbial conversion of ammonium to nitrite then to nitrate, occurs throughout the oceanic water column, yet the environmental factors influencing the production of nitrate in the euphotic zone (EZ) remain unclear. In this study, the natural abundances of N and O isotopes (δ15N and δ18O, respectively) in nitrate were used in an existing model framework to quantify nitrate contributed by EZ nitrification in the California Current Ecosystem (CCE) during two anomalously warm years. Model data estimated that between 6% and 36% of the EZ nitrate reservoirs were derived from the combined steps of nitrification within the EZ. The CCE data set found nitrification contributions to EZ nitrate to be positively correlated with nitrite concentrations () at the depth of the primary nitrite maximum (PNM). Building on this correlation, EZ nitrification in the southern California Current was estimated to contribute on average 20% ± 6% to EZ nitrate as inferred using the PNM of the long‐term California Cooperative Oceanic Fisheries Investigation (CalCOFI) survey record. A multiple linear regression analysis of the CalCOFI PNM time series identified two conditions that led to positive deviations in . Enhanced PNM , and potentially enhanced EZ nitrification, may be linked to (1) reduced phytoplankton competition for ammonium () and as interpreted from particulate organic carbon:chlorophyll ratios, and/or (2) to increased supply of (and then oxidation to ) from the degradation of organic nitrogen as interpreted from particulate organic nitrogen concentrations.

Description: Knowledge concerning mechanisms that control proliferation and differentiation of preadipocytes is essential to our understanding of adipocyte hyperplasia and the development of obesity. Evidence has shown that temporal regulation of mitogen-activated protein kinase (MAPK) phosphorylation and dephosphorylation is critical for coupling extracellular stimuli to cellular growth and differentiation. Using differentiating 3T3-L1 preadipocytes as a model of adipocyte hyperplasia, we examined a role for dual-specificity phosphatase 1 (DUSP1) on the timely modulation of MAPK signaling during states of growth arrest, proliferation, and differentiation. Using real-time reverse transcription PCR (qRT-PCR), we report that DUSP1 is induced during early preadipocyte proliferation concomitant with ERK and p38 dephosphorylation. As deactivation of ERK and p38 is essential for the progression of adipocyte differentiation, we further showed that de novo mRNA synthesis was required for ERK and p38 dephosphorylation, suggesting a role for ‘inducible’ phosphatases in regulating MAPK signaling. Pharmacological and genetic inhibition of DUSP1 markedly increased ERK and p38 phosphorylation during early adipocyte differentiation. Based on these findings, we postulated that loss of DUSP1 would block adipocyte hyperplasia. However, genetic loss of DUSP1 was not sufficient to prevent preadipocyte proliferation or differentiation, suggesting a role for other phosphatases in the regulation of adipogenesis. In support of this, qRT-PCR identified several MAPK-specific DUSPs induced during early (DUSP2, -4, -5, & -6), mid (DUSP4 & -16) and late (DUSP9) stages of adipocyte differentiation. Collectively, these data suggest an important role for DUSPs in regulating MAPK dephosphorylation, with an emphasis on DUSP1, during early adipogenesis. This article is protected by copyright. All rights reserved

Description: [1]  We investigate the storm-scale morphology of the magnetospheric magnetic field as well as underlying distributions of electric currents, equatorial plasma pressure and entropy for four Steady Magnetospheric Convection (SMC) events that occurred during the May 2000 and October 2011 magnetic storms. The analysis is made using the empirical geomagnetic field model TS07D, in which the structure of equatorial currents is not predefined and it is dictated by data. The model also combines the strengths of statistical and event-oriented approaches in mining data for the reconstruction of the magnetic field. The formation of a near-Earth minimum of the equatorial magnetic field in the midnight sector is inferred from data without ad hoc assumptions of a special current system postulated in earlier empirical reconstructions. In addition, a new SMC class is discovered where the minimum equatorial field is substantially larger and located closer to Earth. The magnetic field tailward of the minimumis also much larger, and the corresponding area of accumulated magnetic flux may occupy a very short tail region. The equatorial current and plasma pressure are found to be strongly enhanced far beyond geosynchronous orbit and in a broad local time interval covering the whole nightside region. This picture is consistent with independent recent statistical studies of the SMC pressure distributions, global MHD and kinetic RCM-E simulations. Distributions of the flux tube volume and entropy inferred from data reveal different mechanisms of the magnetotail convection crisis resolution for two classes of SMC events.

Description: Abstract Magnetospheric substorms represent key explosive processes in the interaction of the Earth's magnetosphere with the solar wind, and their understanding and modeling are critical for space weather forecasting. During substorms, the magnetic field on the nightside is first stretched in the antisunward direction and then it rapidly contracts earthward bringing hot plasmas from the distant space regions into the inner magnetosphere, where they contribute to geomagnetic storms and Joule dissipation in the polar ionosphere, causing impressive splashes of aurora. Here we show for the first time that mining millions of spaceborne magnetometer data records from multiple missions allows one to reconstruct the global 3‐D picture of these stretching and dipolarization processes. Stretching results in the formation of a thin (less than the Earth's radius) and strong current sheet, which is diverted into the ionosphere during dipolarization. In the meantime, the dipolarization signal propagates further into the inner magnetosphere resulting in the accumulation of a longer lived current there, giving rise to a protogeomagnetic storm. The global 3‐D structure of the corresponding substorm currents including the substorm current wedge is reconstructed from data.

Description: Abstract Magnetospheric substorms represent key explosive processes in the interaction of the Earth's magnetosphere with the solar wind, and their understanding and modeling are critical for space weather forecasting. During substorms, the magnetic field on the nightside is first stretched in the antisunward direction and then it rapidly contracts earthward bringing hot plasmas from the distant space regions into the inner magnetosphere, where they contribute to geomagnetic storms and Joule dissipation in the polar ionosphere, causing impressive splashes of aurora. Here we show for the first time that mining millions of spaceborne magnetometer data records from multiple missions allows one to reconstruct the global 3‐D picture of these stretching and dipolarization processes. Stretching results in the formation of a thin (less than the Earth's radius) and strong current sheet, which is diverted into the ionosphere during dipolarization. In the meantime, the dipolarization signal propagates further into the inner magnetosphere resulting in the accumulation of a longer lived current there, giving rise to a protogeomagnetic storm. The global 3‐D structure of the corresponding substorm currents including the substorm current wedge is reconstructed from data.

Description: The structure of storm-time currents in the inner magnetosphere, including its innermost region inside 4 R E , is studied for the first time using a modification of the empirical geomagnetic field model TS07D and new data from Van Allen Probes and THEMIS missions. It is shown that the model, which uses basis-function expansions instead of ad hoc current modules to approximate the magnetic field, consistently improves its resolution and magnetic field reconstruction with the increase of the number of basis functions and resolves the spatial structure and evolution of the innermost eastward current. This includes a connection between the westward ring current flowing largely at and the eastward ring current concentrated at resulting in a vortex current pattern. A similar pattern coined ‘banana current’ was previously inferred from the pressure distributions based on the energetic neutral atom imaging and first-principles ring current simulations. The morphology of the equatorial currents is dependent on storm phase. During the main phase, it is complex, with several asymmetries forming 'banana currents'. Near Sym-H minimum, the 'banana current' is strongest, is localized in the evening-midnight sector, and is more structured compared to the main phase. It then weakens during the recovery phase resulting in the equatorial currents to become mostly azimuthally symmetric.