ALBERT

All Library Books, journals and Electronic Records Telegrafenberg

feed icon rss

Your email was sent successfully. Check your inbox.

An error occurred while sending the email. Please try again.

Proceed reservation?

Export
  • 1
    ISSN: 0948-5023
    Keywords: Keywords Human Carbonic Anhydrase II ; Semiempirical MO Theory ; AM1 ; Enzyme Catalysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The approach of CO2 to a series of active site model complexes of human carbonic anhydrase   II (HCAII) and its catalytic hydration to bicarbonate anion have been investigated using semiempirical MO theory (AM1). The results show that direct nucleophilic attack of zinc-bound hydroxide to the substrate carbon occurs in each model system. Further rearrangement of the bicarbonate complex thus formed via a rotation-like movement of the bicarbonate ligand can only be found in active site model systems that include at least one additional water molecule. Further refinement of the model complex by adding a methanol molecule to mimic Thr-199 makes this process almost activationless. The formation of the final bicarbonate complex by an internal (intramolecular) proton transfer is only possible in the simplest of all model systems, namely {[Im3Zn(OH)]+·CO2}. The energy of activation for this process, however, is 36.8 kcal·mol−1 and thus too high for enzymatic catalysis. Therefore, we conclude that within the limitations of the model systems presented and the level of theory employed, the overall mechanism for the formation of the bicarbonate complex comprises an initial direct nucleophilic attack of zinc-bound hydroxide to carbon dioxide followed by a rotation-like rearrangement of the bicarbonate ligand via a penta-coordinate Zn2+ transition state structure, including the participation of an extra active site water molecule.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Journal of molecular modeling 2 (1996), S. 251-277 
    ISSN: 0948-5023
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Preface As editor of this journal and secretary of the Molecular Modeling and Graphics Society (Deutschsprachige Sektion), I have pleasure in presenting this collection of abstracts and full papers from the Workshop. It contains a wealth of material on aspects of molecular modeling ranging from method development and application to multimedia data presentation. The abstracts and full papers collected here give a flavour of the meeting. The electronic mode of publication makes it possible to give a true image of the workshop presenting - for the first time - videos and VRML-scenes. Thanks are due to all those who have submitted contributions and the keynote speakers Paul Madden and Soeren Toxvaerd. Special thanks go to Alfons Geiger (University Dortmund), who was in charge of the organization of the scientific program and to Jürgen Brickmann and his group for the immaculate organization of the technical part of the program. We hope that you will enjoy this collection of abstracts and full papers and are looking forward to welcoming you at the 11th Molecular Modelling Workshop 1997 in Darmstadt. The Molecular Modelling Workshops are organized under the auspices of the Molecular Graphics and Modelling Society - Deutschsprachige Sektion.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 3
    ISSN: 0948-5023
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Journal of molecular modeling 2 (1996), S. 354-357 
    ISSN: 0948-5023
    Keywords: Ab inito ; DFT ; Zinc complexes ; Hydration energies
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Recent ab initio studies reported in the literature have challenged the mechanistic assignments made on the basis of volume of activation data [1,2]. In addition to that ab initio molecular orbital calculations on hydrated zinc(II)-ions were used to elucidate the general role of this ion in metalloproteins [3]. Due to our interest in both inorganic reaction mechanisms and enzymatic catalysis we started a systematic investigation of solvent exchange processes on divalent zinc-ion using density functional calculations. Our investigations cover aqua complexes of the general form [Zn(H2O)n]2+·mH20 with n=3-6 and m=0-2, where n and m represent the number of water molecules in the coordination and solvation sphere, respectively. The complexes [Zn(H2O)5]2+·2H2O and [Zn(H2O)4]2+·2H2O turnend out to be the most stable zinc complexes with seven and six water molecules, respectively. This implies that a heptacoordinated zinc(II) complex, where all water molecules are located in the co-ordination sphere, should be energetically highly unfavorable and that [Zn(H2O)6]2+ can quite readily push two coordinated water molecules into the solvation sphere. For the pentaqua complex [Zn(H2O)5]2+ only one water molecule is easily lost to the solvation sphere, which makes the [Zn(H2O)4]2+·H2O complex the most favorable in order to consider the limiting dissociative and associative water exchange process of hexacoordinated zinc(II). The dehydration and hydration energies using the most stable zinc(II) complexes [Zn(H2O)4]2+·2H2O, [Zn(H2O)5]2+·2H2O and [Zn(H2O)4]2+·H2O were calculated to be 24.1 and -21.0 kcal/mol, respectively.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 5
    ISSN: 0948-5023
    Keywords: Keywords: Fullerene ; Semiempirical calculation ; DFT calculation ; Endohedral complexes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Do the chemical properties of the surface of a carbon sheet depend on its shape? This question addresses a criterion for chemical behaviour that has hardly been investigated previously. The current neglect of this question may be due to the fact that suitable model systems with easily distinguishable graphitic surfaces were essentially unknown until the discovery [1] and synthesis [2,3,4] of fullerenes, nanotubes and other related forms of carbon. In this study, we present the first systematic comparison of the chemical behaviour of the convex outer and the concave inner surfaces of C60 by analysing the results of semiempirical and DFT calculations on exohedral and endohedral complexes with H- and F-atoms as well as with the methyl radical. We show that such extremely reactive species are trapped by the extraordinary inert inner surface of C60 and do not undergo chemical reactions.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 6
    ISSN: 0948-5023
    Keywords: Keywords: Partition coefficient ; logP ; AM1 ; PM3 ; QSAR ; neural netIntroduction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract A back-propagation artificial neural net has been trained to estimate logP values of a large range of organic molecules from the results of AM1 and PM3 semiempirical MO calculations. The input descriptors include molecular properties such as electrostatic potentials, total dipole moments, mean polarizabilities, surfaces, volumes and charges derived from semiempirical calculated gas phase geometries. These properties can be related to the molecule′s solubility in hydrophilic or lipophilic media. The input descriptors were selected with the help of a multiple linear regression analysis. The resulting net estimates the logP values of 105 organic compounds with a standard deviation of 0.53 units from the experimental logP values for AM1 and 0.67 units in the case of PM3.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 7
    ISSN: 0948-5023
    Keywords: Keywords AM1 ; Semiempirical MO ; Hybrid method ; QM/MM ; Zeolites ; Absorption energies
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract An intermolecular hybrid semiempirical MO/molecular mechanics technique is described. The model allows polarisation of the quantum mechanical molecule(s), but not of the molecular mechanics part and is shown to be relatively insensitive to the size of the molecular mechanics environment. It has been validated by comparison of calculated and experimental absorption energies of small organic molecules in various zeolites. This validation gives us confidence that the method is also appropriate for experimentally less well characterised problems, such as solvation or ligand/enzyme complexation.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 8
    ISSN: 0948-5023
    Keywords: Keywords  Molecular Dynamics simulations ; Semiempirical MO-calculations ; Conformational analysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract   A combination of gas phase molecular dynamics and systematic conformational searches with semiempirical MO-theory has been used to identify and characterise the low energy conformations of tetracycline in its neutral non-polar and zwitterionic forms and as the deprotonated zwitteranion. The conformations found have been characterised by cluster- and principal components analyses as belonging to three main groups. These are very similar for the nonpolar and zwitterionic neutral forms of tetracycline, but very different for the anion. The likely consequences of the conformational flexibilty for metal ion complexation by tetracycline are discussed.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Journal of molecular modeling 1 (1995), S. 22-35 
    ISSN: 0948-5023
    Keywords: Keywords:13C Chemical Shift, Semiempirical MO, AM1, PM3, Neural Net
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract A back-propagation artificial neural net has been trained to estimate 13C chemical shifts from the results of AM1 and PM3 semiempirical MO calculations. The input descriptors include the atom-centered monopole, dipole and quadrupole moments derived from the natural atomic orbital/point charge (NAO/PC) model, the four highest bond orders to the carbon atom being considered and the elements to which these bonds are made. The resulting net estimates the chemical shifts of a test set of 156 chemical shifts with a standard deviation of less than 7 ppm from the experimental values for AM1 and slightly more for PM3.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Journal of molecular modeling 1 (1995), S. 176-187 
    ISSN: 0948-5023
    Keywords: Keywords Computational chemistry, potential derived charges, orientational and conformational dependence
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract VESPA, an improved semiempirical method for the calculation of electrostatic potential-derived atomic charges has been tested. It is shown that this approach is even less dependent upon molecular orientation than "high density" CHELPG ab initio ESP-derived charges. The conformational dependence of VESPA charges has been investigated for rotation around the C-N bond in formamide and 11 different conformers of glycerolphosphorylcholine. The results obtained are also compared to the corresponding ab initio values. Finally, VESPA is used to calculate electrostatic potential-derived charges for bioorganic molecules. We discuss the abilities and the limitations of ESP charges in this area.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
Close ⊗
This website uses cookies and the analysis tool Matomo. More information can be found here...