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  • Population genetics
  • Springer  (6)
  • Nature Publishing Group  (1)
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  • 1
    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 4 (2014): 5024, doi:10.1038/srep05024.
    Description: Climate change is a major threat to global biodiversity. Antarctic ecosystems are no exception. Investigating past species responses to climatic events can distinguish natural from anthropogenic impacts. Climate change produces ‘winners’, species that benefit from these events and ‘losers’, species that decline or become extinct. Using molecular techniques, we assess the demographic history and population structure of Pygoscelis penguins in the Scotia Arc related to climate warming after the Last Glacial Maximum (LGM). All three pygoscelid penguins responded positively to post-LGM warming by expanding from glacial refugia, with those breeding at higher latitudes expanding most. Northern (Pygoscelis papua papua) and Southern (Pygoscelis papua ellsworthii) gentoo sub-species likely diverged during the LGM. Comparing historical responses with the literature on current trends, we see Southern gentoo penguins are responding to current warming as they did during post-LGM warming, expanding their range southwards. Conversely, Adélie and chinstrap penguins are experiencing a ‘reversal of fortunes’ as they are now declining in the Antarctic Peninsula, the opposite of their response to post-LGM warming. This suggests current climate warming has decoupled historic population responses in the Antarctic Peninsula, favoring generalist gentoo penguins as climate change ‘winners’, while Adélie and chinstrap penguins have become climate change ‘losers’.
    Description: We thank the Zoological Society of London, Quark Expeditions, Exodus Travels ltd., Oceanites, the Holly Hill Charitable Trust, the Charities Advisory Trust and an U.S. National Science Foundation (NSF) Office of Polar Programs grant (ANT-0739575) for funding.
    Keywords: Climate-change ecology ; Molecular ecology ; Molecular evolution ; Population genetics
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 76 (1988), S. 923-928 
    ISSN: 1432-2242
    Keywords: Genetic diversity ; Population genetics ; Bertholletia excelsa ; Brazil nut ; Isozyme analysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We provide an estimate of genetic variation within and between two populations of Bertholletia excelsa (Brazil nut), a large canopy tree found in the rain forests of South America. Average heterozygosity is 0.190, and 54.3% of the sampled loci are polymorphic. The population structure deviates significantly from Hardy-Weinberg expectations for Fest2 and Pgm2 (F =0.405 and 0.443, respectively) in one population, and highly significantly (F=-0.341) for Gdh in the other population. Although allele frequencies of the two populations differ significantly for Aat2, Est5, Mdh1, and Mdh2B, Nei's coefficient of gene differentiation (Gst) indicates that the between-population component (Dst) of genic diversity represents only 3.75% of the size of the within-population component (Hs). The implications of these findings in terms of conservation genetics are that much of the genetic diversity of this species may be preserved within one or a few populations. However, such populations must be very large because it appears that the large amount of genetic variation in Brazil nut populations is maintained by extensive gene flow and bonds of mating over a large area. The genetic architecture of Bertholletia excelsa is similar to that expected for an extensively diploidized paleopolyploid species.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1432-1432
    Keywords: Mitochondrial DNA ; Human evolution ; Population genetics ; Molecular anthropology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Restriction analysis of mitochondrial DNA (mtDNA) of 3065 humans from 62 geographic samples identified 149 haplotypes and 81 polymorphic sites. These data were used to test several aspects of the evolutionary past of the human species. A dendrogram depicting the genetic relatedness of all haplotypes shows that the native African populations have the greatest diversity and, consistent with evidence from a variety of sources, suggests an African origin for our species. The data also indicate that two individuals drawn, at random from the entire sample will differ at approximately 0.4% of their mtDNA nucleotide sites, which is somewhat higher than previous estimates. Human mtDNA also exhibits more interpopulation heterogeneity (GST=0.351±0.025) than does nuclear DNA (GST=0.12). Moreover, the virtual absence of intermediate levels of linkage disequilibrium between pairs of sites is consistent with the absence of genetic recombination and places constraints on the rate of mutation. Tests of the selective neutrality of mtDNA variation, including the Ewens-Watterson and Tajima tests, indicate a departure in the direction consistent with purifying selection, but this departure is more likely due to the rapid growth of the human population and the geographic heterogeneity of the variation. The lack of a good fit to neutrality poses problems for the estimation of times of coalescence from human mtDNA data.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1432-0983
    Keywords: RFLPs ; Genetic diversity ; Population genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Genetic diversity in the oak wilt pathogen Ceratocystis fagacearum was assessed using restriction fragment length polymorphisms (RFLPs) of the mitochondrial DNA (mtDNA) and anonymous RFLP loci in the nuclear DNA (nuDNA). No genetic variation was detected in the mtDNA among 27 isolates sampled from a broad geographical area. Southern hybridization to 100 anonymous, random, nuDNA probes detected a low level of variation among nine of the isolates. Only 35 out of 437 probe-enzyme combinations detected RFLPs. Most of the RFLPs appeared to result from insertions and deletions of less than 200 bp. A composite multilocus haplotype based on hybridization to six anonymous probes could differentiate each of the nine isolates tested, suggesting that these probes may be useful for further studies of the population biology and epidemiology of this pathogen. Hypotheses are presented to account for the low level of genetic variation.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 69 (1985), S. 631-636 
    ISSN: 1432-2242
    Keywords: Experimental design ; Locus ; Population genetics ; Quantitative genetics ; Statistics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Experimental designs for measuring the effects of single loci on quantitative traits are compared for statistical properties. The designs tested are single population, combined strains, multiple strains, diallel of strains, and co-isogenic strains. Testing was done by simulating population genotypic and phenotypic arrays. Statistical properties measured are type I error, power, bias and efficiency. The relative ranking of designs is consistent for all properties and over eight conditions examined. The co-isogenic design is superior, followed closely by the single population method. The other three designs are similar in ability, with the diallel design somewhat superior. Based on its good statistical performance and wide feasibility, the single population method is recommended. The diallel method provides the most information on genetic components of variation.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 69 (1985), S. 625-629 
    ISSN: 1432-2242
    Keywords: Drosophila melanogaster ; Esterase 6 ; Mating behavior ; Population genetics ; Quantitative genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A modified diallel cross is used to estimate effects of alleles at the esterase 6 locus, relative to strain and environmental variance, in Drosophila melanogaster. Three strains homozygous for Est 6 s and three homozygous for Est 6 F were crossed in all 36 combinations. Male progeny were scored for mating speed, copula duration and esterase 6 enzyme activity, and all progeny for developmental time. These alleles show a significant additive effect on mating speed, but not on the other traits. Copula duration, developmental time and enzyme activity show additive strain genetic variance. Enzyme activity and developmental time also have maternal or X-chromosome strain variance, and these two traits are significantly correlated. This modified diallel method is generally useful because it permits the partition of trait variance into additive and dominant locus, background genetic and environmental components.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    Human evolution 7 (1992), S. 47-61 
    ISSN: 1824-310X
    Keywords: Population genetics ; Phylogeny ; human history ; isolation by distance
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Molecular biologists and some population geneticists have recently claimed to be able to reconstruct modern human populations remote history by means of phylogenetic trees. Many objections to this method are discussed in the present paper. The most important are 1) Inter-populations migrations are likely to have been important, even in the remote past. So the “treeness” of this evolution is disputable. 2) There is no reason to believe that actual molecular phylogenies would be convergent between different molecules and would therefore represent populations history. The various kind of genetic data, their relations to other data and the limits of their possible use in the analysis of our past are then discussed, together with the ideological background of the most common theories and of their publication. It is very likely that the history of different populations was heterogeneous. Small and isolated hunter-gatherers frequently evolving close to a phylogenetic model, while dense and increasing populations, since the Neolithic, were closer to a dynamic network model, structured by isolation by distance. In any case, our present knowledge is obviously insufficient to reconstruct our genetic past, especially on the long term, and we can only hope that the development of the HUGO Genome Diversity project is going to yield the significant information presently lacking.
    Type of Medium: Electronic Resource
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