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  • 1
    Publication Date: 1972-05-01
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
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  • 2
  • 3
    Publication Date: 1990-04-01
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
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  • 4
    Publication Date: 2015-05-03
    Description: Intrinsic alignments (IA) of galaxies, i.e. correlations of galaxy shapes with each other (II) or with the density field (gI), are potentially a major astrophysical source of contamination for weak lensing surveys. We present the results of IA measurements of galaxies on 0.1–200 h –1  Mpc scales using the SDSS-III BOSS low-redshift (LOWZ) sample, in the redshift range 0.16 〈  z  〈 0.36. We extend the existing IA measurements for spectroscopic luminous red galaxies (LRGs) to lower luminosities, and show that the luminosity dependence of large-scale IA can be well described by a power law. Within the limited redshift and colour range of our sample, we observe no significant redshift or colour dependence of IA. We measure the halo mass of galaxies using galaxy–galaxy lensing, and show that the mass dependence of large-scale IA is also well described by a power law. We detect variations in the scale dependence of IA with mass and luminosity, which underscores the need to use flexible templates in order to remove the IA signal. We also study the environment dependence of IA by splitting the sample into field and group galaxies, which are further split into satellite and central galaxies. We show that group central galaxies are aligned with their haloes at small scales and also are aligned with the tidal fields out to large scales. We also detect the radial alignments of satellite galaxies within groups. These results can be used to construct better IA models for removal of this contaminant to the weak lensing signal.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
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  • 5
    Publication Date: 2015-09-13
    Description: Dispersion analysis of Rayleigh waves is performed to assess the velocity of complex structures such as sedimentary basins. At short periods several modes of the Rayleigh waves are often exited. To perform a reliable inversion of the velocity structure an identification of these modes is thus required. We propose a novel method to identify the modes of surface waves. We use the spectral ratio of the ground velocity for the horizontal components over the vertical component (H/V) measured on seismic coda. We then compare the observed values with the theoretical H/V ratio for velocity models deduced from surface wave dispersion when assuming a particular mode. We first invert the Rayleigh wave measurements retrieved from ambient noise cross-correlation with the assumptions that (1) the fundamental mode and (2) the first overtone are excited. Then we use these different velocity models to predict theoretical spectral ratios of the ground velocity for the horizontal components over the vertical component (H/V). These H/V ratios are computed under the hypothesis of equipartition of a diffuse field in a layered medium. Finally we discriminate between fundamental and higher modes by comparing the theoretical H/V ratio with the H/V ratio measured on seismic coda. In an application, we reconstruct Rayleigh waves from cross-correlations of ambient seismic noise recorded at seven broad-band stations in the Valley of Mexico. For paths within the soft quaternary sediments basin, the maximum energy is observed at velocities higher than expected for the fundamental mode. We identify that the dominant mode is the first higher mode, which suggests the importance of higher modes as the main vectors of energy in such complex structures.
    Keywords: Seismology
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
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  • 6
    Publication Date: 2015-09-19
    Description: RNA editing of miRNAs, especially in the seed region, adds another layer to miRNA mediated gene regulation which can modify its targets, altering cellular signaling involved in important processes such as differentiation. In this study, we have explored the role of miRNA editing in CD4 + T cell differentiation. CD4 + T cells are an integral component of the adaptive immune system. Naïve CD4 + T cells, on encountering an antigen, get differentiated either into inflammatory subtypes like Th1, Th2 or Th17, or into immunosuppressive subtype Treg, depending on the cytokine milieu. We found C-to-U editing at fifth position of mature miR-100, specifically in Treg. The C-to-U editing of miR-100 is functionally associated with at least one biologically relevant target change, from MTOR to SMAD2. Treg cell polarization by TGFβ1 was reduced by both edited and unedited miR-100 mimics, but percentage of Treg in PBMCs was only reduced by edited miR-100 mimics, suggesting a model in which de-repression of MTOR due to loss of unedited mir-100, promotes tolerogenic signaling, while gain of edited miR-100 represses SMAD2, thereby limiting the Treg. Such delicately counterbalanced systems are a hallmark of immune plasticity and we propose that miR-100 editing is a novel mechanism toward this end.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 7
    Publication Date: 2015-09-24
    Description: The Fundamental Plane (FP) is a widely used tool to investigate the properties of early-type galaxies, and the tight relation between its parameters has spawned several cosmological applications, including its use as a distance indicator for peculiar velocity surveys and as a means to suppress intrinsic noise in cosmic size magnification measurements. Systematic trends with the large-scale structure across the FP could cause serious biases for these cosmological probes, but may also yield new insights into the early-type population. Here we report the first detection of spatial correlations among offsets in galaxy size from an FP that explicitly accounts for redshift trends, using a sample of about 95 000 elliptical galaxies from the Sloan Digital Sky Survey. We show that these offsets correlate with the density field out to at least 10 h –1  Mpc at 4 significance in a way that cannot be explained by systematic errors in galaxy size estimates. We propose a physical explanation for the correlations by dividing the sample into central, satellite, and field galaxies, identifying trends for each galaxy type separately. Central (satellite) galaxies lie on average above (below) the FP, which we argue could be due to a higher (lower) than average mass-to-light ratio. We fit a simple model to the correlations of FP residuals and use it to predict the impact on peculiar velocity power spectra, finding a contamination larger than 10 per cent for k  〉 0.04 h  Mpc –1 . Moreover, cosmic magnification measurements based on an FP could be severely contaminated over a wide range of scales by the intrinsic FP correlations.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
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  • 8
    Publication Date: 2015-12-01
    Description: Gene mutations, mostly segregating with a dominant mode of inheritance, are important causes of dilated cardiomyopathy (DCM), a disease characterized by enlarged ventricular dimensions, impaired cardiac function, heart failure and high risk of death. Another myocardial abnormality often linked to gene mutations is left ventricular noncompaction (LVNC) characterized by a typical diffuse spongy appearance of the left ventricle. Here, we describe a large Bedouin family presenting with a severe recessive DCM and LVNC. Homozygosity mapping and exome sequencing identified a single gene variant that segregated as expected and was neither reported in databases nor in Bedouin population controls. The PLEKHM2 cDNA2156_2157delAG variant causes the frameshift p.Lys645AlafsTer12 and/or the skipping of exon 11 that results in deletion of 30 highly conserved amino acids. PLEKHM2 is known to interact with several Rabs and with kinesin-1, affecting endosomal trafficking. Accordingly, patients' primary fibroblasts exhibited abnormal subcellular distribution of endosomes marked by Rab5, Rab7 and Rab9, as well as the Golgi apparatus. In addition, lysosomes appeared to be concentrated in the perinuclear region, and autophagy flux was impaired. Transfection of wild-type PLEKHM2 cDNA into patient's fibroblasts corrected the subcellular distribution of the lysosomes, supporting the causal effect of PLEKHM2 mutation. PLEKHM2 joins LAMP-2 and BAG3 as a disease gene altering autophagy resulting in an isolated cardiac phenotype. The association of PLEKHM2 mutation with DCM and LVNC supports the importance of autophagy for normal cardiac function.
    Print ISSN: 0964-6906
    Electronic ISSN: 1460-2083
    Topics: Biology , Medicine
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  • 9
    Publication Date: 2012-04-25
    Description: Disruption of the blood-brain barrier (BBB) is a serious complication frequently encountered in neurodegenerative disorders. Infantile neuronal ceroid lipofuscinosis (INCL) is a devastating childhood neurodegenerative lysosomal storage disorder caused by palmitoyl-protein thioesterase-1 (PPT1) deficiency. It remains unclear whether BBB is disrupted in INCL and if so, what might be the molecular mechanism(s) of this complication. We previously reported that the Ppt1 -knockout ( Ppt1 -KO) mice that mimic INCL manifest high levels of oxidative stress and neuroinflammation. Recently, it has been reported that CD4 + T-helper 17 (T H 17) lymphocytes may mediate BBB disruption and neuroinflammation, although the precise molecular mechanism(s) remain unclear. We sought to determine: (i) whether the BBB is disrupted in Ppt1 -KO mice, (ii) if so, do T H 17-lymphocytes underlie this complication, and (iii) how might T H 17 lymphocytes breach the BBB. Here, we report that the BBB is disrupted in Ppt1 -KO mice and that T H 17 lymphocytes producing IL-17A mediate disruption of the BBB by stimulating production of matrix metalloproteinases (MMPs), which degrade the tight junction proteins essential for maintaining BBB integrity. Importantly, dietary supplementation of resveratrol (RSV), a naturally occurring antioxidant/anti-inflammatory polyphenol, markedly reduced the levels of T H 17 cells, IL-17A and MMPs, and elevated the levels of tight junction proteins, which improved the BBB integrity in Ppt1 -KO mice. Intriguingly, we found that RSV suppressed the differentiation of CD4 + T lymphocytes to IL-17A-positive T H 17 cells. Our findings uncover a mechanism by which T H 17 lymphocytes mediate BBB disruption and suggest that small molecules such as RSV that suppress T H 17 differentiation are therapeutic targets for neurodegenerative disorders such as INCL.
    Print ISSN: 0964-6906
    Electronic ISSN: 1460-2083
    Topics: Biology , Medicine
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  • 10
    Publication Date: 2013-10-09
    Description: Low-density lipoprotein receptor related protein 6 ( Lrp6) mutational effects on neurulation were examined using gain ( Crooked tail, Lrp6 Cd ) and loss ( Lrp6 – ) of function mouse lines. Two features often associated with canonical Wnt signaling, dorsal–ventral patterning and proliferation, were no different from wild-type (WT) in the Lrp6 Cd/Cd neural tube. Lrp6 –/– embryos showed reduced proliferation and subtle patterning changes in the neural folds. Cell polarity defects in both Lrp6 Cd/Cd and Lrp6 – / – cranial folds were indicated by cell shape, centrosome displacement and failure of F-actin and GTP-RhoA accumulation at the apical surface. Mouse embryonic fibroblasts (MEFs) derived from Lrp6 Cd/Cd or Lrp6 – / – embryos exhibited elevated and decreased RhoA basal activity levels, respectively. While ligand-independent activation of canonical Wnt signaling, bypassing Lrp-Frizzled receptors, did not activate RhoA, non-canonical Wnt5a stimulation of RhoA activity was impaired in Lrp6 – / – MEFs. RhoA inhibition exacerbated NTDs in cultured Lrp6 knockout embryos compared with WT littermates. In contrast, a ROCK inhibitor rescued Lrp6 Cd/Cd embryos from NTDs. Lrp6 co-immunoprecipitated with Disheveled-associated activator of morphogenesis 1 (DAAM1), a formin promoting GEF activity in Wnt signaling. Biochemical and cell biological data revealed intracellular accumulation of Lrp6 Cd protein where interaction with DAAM1 could account for observed elevated RhoA activity. Conversely, null mutation that eliminates Lrp6 interaction with DAAM1 led to lower basal RhoA activity in Lrp6 – / – embryos. These results indicate that Lrp6 mediates not only canonical Wnt signaling, but can also modulate non-canonical pathways involving RhoA-dependent mechanisms to impact neurulation, possibly through intracellular complexes with DAAM1.
    Print ISSN: 0964-6906
    Electronic ISSN: 1460-2083
    Topics: Biology , Medicine
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