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  • Articles  (2)
  • Oxford University Press  (1)
  • Sage  (1)
  • American Chemical Society (ACS)
  • American Chemical Society
  • 2015-2019  (2)
  • 2016  (2)
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  • Articles  (2)
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  • 2015-2019  (2)
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  • 1
    Publication Date: 2016-06-28
    Description: Sea-level rise (SLR) is one of the most conspicuous examples of the environmental impact of recent climate change. Since SLR rates are not uniform around the planet, local and regional data are needed for proper adaptation plans. 210 Pb-dated sediment cores were analyzed to determine the trends of sediment accretion rates (SARs) at three tropical saltmarshes in the Estero de Urias lagoon (Gulf of California, Mexico), in order to estimate the SLR trends during the past ~100 years, under the assumption that these ecosystems accrete at a similar rate to SLR. A chemometric approach, including multivariate statistical analysis (factor analysis) of geochemical data (including 13 C; 15 N; C/N ratios; and Br, Na, and Cl as proxies for marine transgression) was used to identify the marine transgression in the sediment records. Based on core geochemistry, only one of the three cores provided a long-term record attributable to marine transgression. SLR trends, estimated from SARs, showed increasing values, from a minimum of 0.73 ± 0.03 mm yr –1 at the beginning of the 20th century and up to 3.87 ± 0.12 mm yr –1 during the period 1990–2012. The estimated SLR trend between 1950 and 1970 was comparable to the tide gauge records in Mazatlan City for the same period. Results showed the caveats and strengths of this methodology to reconstruct decadal SLR trends from the sedimentary record, which can be used to estimate long-term SLR trends worldwide in regions where monitoring data are scarce or absent.
    Print ISSN: 0959-6836
    Electronic ISSN: 1477-0911
    Topics: Geography , Geosciences
    Published by Sage
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  • 2
    Publication Date: 2016-09-12
    Description: Motivation : Data on bioactivities of drug-like chemicals are rapidly accumulating in public repositories, creating new opportunities for research in computational systems pharmacology. However, integrative analysis of these data sets is difficult due to prevailing ambiguity between chemical names and identifiers and a lack of cross-references between databases. Results : To address this challenge, we have developed CART, a Chemical Annotation Retrieval Toolkit. As a key functionality, it matches an input list of chemical names into a comprehensive reference space to assign unambiguous chemical identifiers. In this unified space, bioactivity annotations can be easily retrieved from databases covering a wide variety of chemical effects on biological systems. Subsequently, CART can determine annotations enriched in the input set of chemicals and display these in tabular format and interactive network visualizations, thereby facilitating integrative analysis of chemical bioactivity data. Availability and Implementation : CART is available as a Galaxy web service (cart.embl.de). Source code and an easy-to-install command line tool can also be obtained from the web site. Contact : bork@embl.de Supplementary information: Supplementary data are available at Bioinformatics online.
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
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