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  • 1
    Publication Date: 2015-04-28
    Description: Lactosylceramide (LacCer), which is essential for many cellular processes, is highly expressed on the plasma membranes of human neutrophils and mediates innate immune functions. Less is known, however, about the properties and biological functions of LacCer in mouse neutrophils. This study therefore analyzed the properties of mouse neutrophil LacCer. LacCer was observed on the surface of these cells, with flow cytometry indicating that mouse neutrophil LacCer could be detected by the anti-LacCer mAb T5A7, but not by the anti-LacCer antibodies Huly-m13 and MEM-74. The molecular species of LacCer were nearly identical in mouse and human neutrophils, including C24:0 and C24:1 fatty acid chain-containing species, although the LacCer content in plasma membranes was ~20-fold lower in mouse than in human neutrophils. Surface plasmon resonance analysis revealed that T5A7 bound to a lipid monolayer composed of LacCer, DOPC, cholesterol and sphingomyelin (molar ratio 0.1 : 10 : 10 : 1), whereas Huly-m13 did not. T5A7 induced neutrophil migration, which was abolished by inhibitors of Src-family kinases, PI-3 kinases, and trimeric G (o/i) proteins. T5A7 also inhibited phagocytosis of non-opsonized zymosans by neutrophils. Taken together, these findings suggest that in mouse neutrophils, (i) LacCer is expressed as LacCer-enriched microdomains in cell surface plasma membranes, (ii) these microdomains are recognized by T5A7 but not by other known anti-LacCer antibodies and (iii) LacCer is involved in cell migration and phagocytosis.
    Print ISSN: 0959-6658
    Electronic ISSN: 1460-2423
    Topics: Biology , Medicine
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  • 2
    Publication Date: 2015-09-19
    Description: The immutability of the genetic code has been challenged with the successful reassignment of the UAG stop codon to non-natural amino acids in Escherichia coli . In the present study, we demonstrated the in vivo reassignment of the AGG sense codon from arginine to l -homoarginine. As the first step, we engineered a novel variant of the archaeal pyrrolysyl-tRNA synthetase (PylRS) able to recognize l -homoarginine and l - N 6 -(1-iminoethyl)lysine ( l -NIL). When this PylRS variant or HarRS was expressed in E. coli , together with the AGG-reading tRNA Pyl CCU molecule, these arginine analogs were efficiently incorporated into proteins in response to AGG. Next, some or all of the AGG codons in the essential genes were eliminated by their synonymous replacements with other arginine codons, whereas the majority of the AGG codons remained in the genome. The bacterial host's ability to translate AGG into arginine was then restricted in a temperature-dependent manner. The temperature sensitivity caused by this restriction was rescued by the translation of AGG to l -homoarginine or l -NIL. The assignment of AGG to l -homoarginine in the cells was confirmed by mass spectrometric analyses. The results showed the feasibility of breaking the degeneracy of sense codons to enhance the amino-acid diversity in the genetic code.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 3
    Publication Date: 2016-02-24
    Description: Guanine is the most easily oxidized of the four DNA bases, and contiguous guanines (GG) in a sequence are more readily oxidized than a single guanine in a sequence. Continued oxidation of GGs results in a contiguous oxidized guanine lesion. Two contiguous 2,5-diamino-4 H -imidazol-4-ones, an oxidized form of guanine that hydrolyses to 2,2,4-triamino-5(2 H )-oxazolone (Oz), are detected following the oxidation of GG. In this study, we analysed translesion synthesis (TLS) across two contiguous Oz molecules (OzOz) using Klenow Fragment exo – (KF exo – ) and DNA polymerases (Pols) α , β , , , , and REV1. We found that KF exo – and Pols α , β , and REV1 inserted one nucleotide opposite the 3' Oz of OzOz and stalled at the subsequent extension, and that Pol incorporated no nucleotide. Pol only inefficiently elongated the primer up to full-length across OzOz; the synthesis of most DNA strands stalled at the 3' or 5' Oz of OzOz. Surprisingly, however, Pol efficiently extended the primer up to full-length across OzOz, unlike the other DNA polymerases, but catalysed error-prone nucleotide incorporation. We therefore believe that Pol is required for efficient TLS of OzOz. These results show that OzOz obstructs DNA synthesis by DNA polymerases except Pol .
    Print ISSN: 0021-924X
    Electronic ISSN: 1756-2651
    Topics: Biology , Chemistry and Pharmacology
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  • 4
    Publication Date: 2011-11-24
    Description: This study investigated the growth rate of Limnoperna fortunei postlarvae on experimental frames over the course of a year, to evaluate the effects of physicochemical environmental factors on their growth in a reservoir, Lake Ohshio, Gunma, Japan. The median shell size of L. fortunei slightly increased in the autumn after recruitment, exhibited little growth in winter and then greatly increased in summer. Water temperature was positively correlated with growth rate of L. fortunei . However, we found no correlation between the growth rate and dissolved oxygen, chlorophyll a or turbidity. The settlement pattern of L. fortunei was also investigated during the course of a year. Second-year recruit density was much higher than for first-year recruits.
    Print ISSN: 0260-1230
    Electronic ISSN: 1464-3766
    Topics: Biology
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  • 5
    Publication Date: 2013-12-03
    Description: The endosome/lysosome compartments play pivotal roles in immune cell functions as signalling platforms. These intracellular compartments can efficiently restrict the localization of signalling complexes and temporally regulate signalling events to produce qualitatively different outcomes. Immune cells also exploit the endosome/lysosome system for signal transduction and intercellular communication to elicit immune responses. Antigen-presenting cells such as dendritic cells and macrophages take up pathogens by endocytosis and prepare antigens via the endosome/lysosome system. At the same time, pathogen-derived DNA and RNA are recognized by immune sensors at the endosome/lysosome compartments, which transmit signals to induce immune responses. Recent studies revealed the importance of controlling the endosomal/lysosomal environment for eliciting efficient signalling events at the endosomes/lysosomes. Many factors including pH, membrane potential, amino acid concentrations and lipid composition are finely tuned at the endosome/lysosome compartments, and dysregulation of these factors greatly affect immune cell functions. Redox-related molecules and various types of transporters are involved in the control of endosomal/lysosomal environment and could be good therapeutic targets for treating autoimmune diseases.
    Print ISSN: 0021-924X
    Electronic ISSN: 1756-2651
    Topics: Biology , Chemistry and Pharmacology
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  • 6
  • 7
    Publication Date: 2014-11-11
    Description: The zooplankton community changes that may occur with increases in concentration of allochthonous dissolved organic carbon (DOC) are not well understood in unconstrained lowland rivers. We examined in mesocoms over 8 days the short-term responses of river zooplankton to amendments of DOC from two different sources, glucose and leachates of a common riparian tree ( Eucalyptus camaldulensis ; river red gum) both alone and with inorganic nutrients added. DOC additions with and without nutrients increased heterotrophic respiration and led to significant increases in bacterial biomass. These responses varied between glucose and leachate addition. In treatments with added DOC, zooplankton density significantly increased relative to controls. Some zooplankton genera only responded to the leachate as a DOC source, and community structures significantly varied between the control and the glucose and leachate amendments. Zooplankton are particularly important in lowland river systems as they are key organisms for the transfer of carbon to higher trophic levels and this study indicates that allochthonous DOC has the potential to be an important basal resource to lowland river food webs. This may be particularly important in lowland sections of unconstrained flood plain rivers during and immediately following floods when allochthonous DOC is more available.
    Print ISSN: 0142-7873
    Electronic ISSN: 1464-3774
    Topics: Biology
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  • 8
    Publication Date: 2014-11-21
    Description: Disturbances of lipid metabolism have been implicated in psychiatric illnesses. We previously reported an association between the gene for fatty acid binding protein 7 ( FABP7 ) and schizophrenia. Furthermore, we identified and reported several rare non-synonymous polymorphisms of the brain-expressed genes FABP3 , FABP5 and FABP7 from schizophrenia and autism spectrum disorder (ASD), diseases known to part share genetic architecture. Here, we conducted further studies to better understand the contribution these genes make to the pathogenesis of schizophrenia and ASD. In postmortem brains, we detected altered mRNA expression levels of FABP5 in schizophrenia, and of FABP7 in ASD and altered FABP5 in peripheral lymphocytes. Using a patient cohort, comprehensive mutation screening identified six missense and two frameshift variants from the three FABP genes. The two frameshift proteins, FABP3 E132fs and FABP7 N80fs, formed cellular aggregates and were unstable when expressed in cultured cells. The four missense mutants with predicted possible damaging outcomes showed no changes in intracellular localization. Examining ligand binding properties, FABP7 S86G and FABP7 V126L lost their preference for docosahexaenoic acid to linoleic acid. Finally, mice deficient in Fabp3 , Fabp5 and Fabp7 were evaluated in a systematic behavioral test battery. The Fabp3 knockout (KO) mice showed decreased social memory and novelty seeking, and Fabp7 KO mice displayed hyperactive and anxiety-related phenotypes, while Fabp5 KO mice showed no apparent phenotypes. In conclusion, disturbances in brain-expressed FABPs could represent an underlying disease mechanism in a proportion of schizophrenia and ASD sufferers.
    Print ISSN: 0964-6906
    Electronic ISSN: 1460-2083
    Topics: Biology , Medicine
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  • 9
    Publication Date: 2016-04-29
    Description: Coseismic deformation depends on both the source fault and on the elastic properties of the crust. Large coseismic deformation associated with the 2011 M w 9.0 Tohoku-oki earthquake enabled us to investigate strain anomalies from crustal inhomogeneity. Concentrated contractional strain was observed in the Echigo Plain (Niigata-Kobe Tectonic Zone) before the Tohoku-oki earthquake, whereas continuous and campaign global navigation satellite system measurements show a widespread distribution of coseismic extensional strain in and around the plain. A 1-D displacement profile shows high strain (7.2 ± 0.7 microstrain) in a 17 km long section across the Echigo Plain and low strain (3.3 ± 0.4 microstrain) along a 15 km long section east of the plain, despite the latter being closer to the megathrust fault source. We performed numerical modelling of coseismic deformation using a heterogeneous subsurface structure and successfully reproduced excess extension in the plain, which is filled by low-rigidity sediments. This study demonstrates the importance of considering heterogeneous crust in deformation modelling.
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
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  • 10
    Publication Date: 2016-05-20
    Description: Genome instability triggers cellular senescence and is a common cause of cancer. The ribosomal RNA genes (rDNA), due to their repetitive structure, form a fragile site with frequent rearrangements. To identify eukaryotic factors that connect reduced genome stability to senescence we screened 4,876 strains of a Saccharomyces cerevisiae deletion library for aberrant rDNA and found 708 genes that contribute to its upkeep. 28 mutants caused abnormalities in non-rDNA chromosomes and among them 12 mutants have abnormalities both in rDNA and in non-rDNA chromosomes. Many mutated genes have not previously been implicated with genome maintenance nor their homologues with tumorigenesis in mammals. The link between rDNA state and senescence was broken after deletion of factors related with DNA polymerase . These mutations also suppressed the short lifespan phenotype of a sir2 mutant, suggesting a model in which molecular events at the heart of the replication fork induce abnormal rDNA recombination and are responsible for the emergence of an aging signal.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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