ALBERT

Description: We present an implementation of smoothed particle hydrodynamics (SPH) with improved accuracy for simulations of galaxies and the large-scale structure. In particular, we implement and test a vast majority of SPH improvement in the developer version of gadget -3. We use the Wendland kernel functions, a particle wake-up time-step limiting mechanism and a time-dependent scheme for artificial viscosity including high-order gradient computation and shear flow limiter. Additionally, we include a novel prescription for time-dependent artificial conduction, which corrects for gravitationally induced pressure gradients and improves the SPH performance in capturing the development of gas-dynamical instabilities. We extensively test our new implementation in a wide range of hydrodynamical standard tests including weak and strong shocks as well as shear flows, turbulent spectra, gas mixing, hydrostatic equilibria and self-gravitating gas clouds. We jointly employ all modifications; however, when necessary we study the performance of individual code modules. We approximate hydrodynamical states more accurately and with significantly less noise than standard gadget -SPH. Furthermore, the new implementation promotes the mixing of entropy between different fluid phases, also within cosmological simulations. Finally, we study the performance of the hydrodynamical solver in the context of radiative galaxy formation and non-radiative galaxy cluster formation. We find galactic discs to be colder and more extended and galaxy clusters showing entropy cores instead of steadily declining entropy profiles. In summary, we demonstrate that our improved SPH implementation overcomes most of the undesirable limitations of standard gadget -SPH, thus becoming the core of an efficient code for large cosmological simulations.

Description: We present constraints on the origins of fast radio bursts (FRBs) using large cosmological simulations. We calculate contributions to FRB dispersion measures (DMs) from the Milky Way, from the Local Universe, from cosmological large-scale structure, and from potential FRB host galaxies, and then compare these simulations to the DMs of observed FRBs. We find that the Milky Way contribution has previously been underestimated by a factor of ~2, and that the foreground-subtracted DMs are consistent with a cosmological origin, corresponding to a source population observable to a maximum redshift z  ~ 0.6–0.9. We consider models for the spatial distribution of FRBs in which they are randomly distributed in the Universe, track the star formation rate of their host galaxies, track total stellar mass, or require a central supermassive black hole. Current data do not discriminate between these possibilities, but the predicted DM distributions for different models will differ considerably once we begin detecting FRBs at higher DMs and higher redshifts. We additionally consider the distribution of FRB fluences, and show that the observations are consistent with FRBs being standard candles, each burst producing the same radiated isotropic energy. The data imply a constant isotropic burst energy of ~7  x  10 40  erg if FRBs are embedded in host galaxies, or ~9  x  10 40  erg if FRBs are randomly distributed. These energies are 10–100 times larger than had previously been inferred. Within the constraints of the available small sample of data, our analysis favours FRB mechanisms for which the isotropic radiated energy has a narrow distribution in excess of 10 40  erg.

Description: The interplay between sediment deposition patterns, organic matter type and the quantity and quality of reactive mineral phases determines the accumulation, speciation and isotope composition of pore water and solid phase sulfur constituents in marine sediments. Here, we present the sulfur geochemistry of siliciclastic sediments from two sites along the Argentine continental slope--a system characterized by dynamic deposition and reworking, which result in non-steady state conditions. The two investigated sites have different depositional histories but have in common that reactive iron phases are abundant and that organic matter is refractory--conditions that result in low organoclastic sulfate reduction rates. Deposition of reworked, isotopically light pyrite and sulfurized organic matter appear to be important contributors to the sulfur inventory, with only minor addition of pyrite from organoclastic sulfate reduction above the sulfate-methane transition (SMT). Pore-water sulfide is limited to a narrow zone at the SMT. The core of that zone is dominated by pyrite accumulation. Iron monosulfide and elemental sulfur accumulate above and below this zone. Iron monosulfide precipitation is driven by the reaction of low amounts of hydrogen sulfide with ferrous iron and is in competition with the oxidation of sulfide by iron (oxyhydr)oxides to form elemental sulfur. The intervals marked by precipitation of intermediate sulfur phases at the margin of the zone with free sulfide are bordered by two distinct peaks in total organic sulfur. Organic matter sulfurization appears to precede pyrite formation in the iron-dominated margins of the sulfide zone, potentially linked to the presence of polysulfides formed by reaction between dissolved sulfide and elemental sulfur. Thus, SMTs can be hotspots for organic matter sulfurization in sulfide-limited, reactive iron-rich marine sedimentary systems. Furthermore, existence of elemental sulfur and iron monosulfide phases meters below the SMT demonstrates that in sulfide-limited systems metastable sulfur constituents are not readily converted to pyrite but can be buried to deeper sediment depths. Our data show that in non-steady state systems, redox zones do not occur in sequence but can reappear or proceed in inverse sequence throughout the sediment column, causing similar mineral alteration processes to occur at the same time at different sediment depths.

Description: A continuous 10-m-long section consisting of roughly two thirds Ethmodiscus rex (a diatom) and one third mixed planktonic foraminifera was identified in a core from 3800 m depth at 9°S on the Indian Ocean's 90°E Ridge. Radiocarbon dates place the onset of deposition of this layer at 〉30,000 years B.P. and its termination at close to 11,000 years B.P. However, precise dating of the foraminifera from the Ethmodiscus layer itself proved to be impossible owing to the presence of secondary calcite presumably precipitated from the pore waters. During the Holocene, high calcium carbonate content ooze free of diatoms was deposited at this locale. As the site currently lies beneath the pathway taken by upper ocean waters entering the Indian Ocean from the Pacific (via the Indonesian Straits), it appears that during glacial time, thermocline waters moving along this same path provided the silica and other nutrients required by these diatoms.

Description: The marine fungus Microascus brevicaulis strain LF580 is a non-model secondary metabolite producer with high yields of the two secondary metabolites scopularide A and B, which exhibit distinct activities against tumour cell lines. A mutant strain was obtained using UV mutagenesis, showing besides higher production levels faster growth and differences in pellet formation. Comparative proteomics were applied to gain deeper understanding of the regulation of production and of the physiology of this fungus and its mutant. For this purpose, an optimised protein extraction protocol was established. Here, we show the first proteome study of a marine fungus. In total, 4759 proteins were identified. The central metabolic pathway of LF580 could be mapped by using KEGG pathway analysis and GO annotation. Using iTRAQ labelling, 318 proteins were shown to be significantly regulated in the mutant strain: 189 were down- and 129 upregulated. Proteomics are a powerful tool for the understanding of regulatory aspects: The differences on proteome level could be attributed to a limited nutrient availability in wild type strain due to a strong pellet formation. This information can be applied to optimisation on strain and process level. The linkage between nutrient limitation and pellet formation in the non-model fungus M. brevicaulis is in consensus with the knowledge on model organisms like Aspergillus niger and Penicillium chrysogenum.

Description: Since ice-free areas in Antarctica are predicted to increase by up to 25% before the end of this century, lichens such as the genus Placopsis will be important colonizers of these newly available grounds and will still be present in later successional stages of the lichen community. The main symbionts of Placopsis species are examined for 56 specimens collected from the South Shetland Islands, Antarctica using molecular (fungal and algal nrITS, fungal RPB1, algal rbcL sequences) and morphological methods. The specimens were collected from soils with different deglaciation times. Eight uni-algal photobiont cultures were obtained and analysed from two specimens. Placopsis antarctica and P. contortuplicata proved to be monophyletic and are sister species, only the former producing vegetative diaspores (soredia). Both share the same photobiont pool and are lichenized with two closely related species, Stichococcus antarcticus and S. allas. Two haplotypes of S. antarcticus are restricted to areas deglaciated for more than 5000 years and the volcanic Deception Island indicating a shift in the photobionts of Placopsis in the course of the soil and lichen community development. These photobiont haplotypes exhibit different ecological preferences, possibly leading to adaptation of the symbiotic entity to changing environmental conditions.