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  • 1
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Annals of the New York Academy of Sciences 149 (1968), S. 0 
    ISSN: 1749-6632
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Natural Sciences in General
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Molecular microbiology 5 (1991), S. 0 
    ISSN: 1365-2958
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Notes: During carbon-starvation-induced entry into stationary phase, Escherichia coli cells exhibit a variety of physiological and morphological changes that ensure survival during periods of prolonged starvation. Induction of 30–50 proteins of mostly unknown function has been shown under these conditions. In an attempt to identify C-starvation-regulated genes we isolated and characterized chromosomal C-starvation- induced csi::lacZ fusions using the λplac Mu system. One operon fusion (csi 2::lacZ) has been studied in detail. csi 2::lacZ was induced during transition from exponential to stationary phase and was negatively regulated by cAMP. It was mapped at 59 min on the E. coli chromosome and conferred a pleiotropic phenotype. As demonstrated by two-dimensional gel electrophoresis, cells carrying csi 2::lacZ did not synthesize at least 16 proteins present In an isogenic csi 2+ strain. Cells containing csi 2::lacZ or csi 2::Tn10 did not produce glycogen, did not develop thermo-tolerance and H2O2 resistance, and did not induce a stationary-phase-specific acidic phosphatase (AppA) as well as another csi fusion (csi5::lacZ). Moreover, they died off much more rapidly than wild-type cells during prolonged starvation. We conclude that csi 2::lacZ defines a regulatory gene of central importance for stationary phase E. coli cells. These results and the cloning of the wild-type gene corresponding to csi 2 demonstrated that the csi 2 locus is allelic with the previously identified regulatory genes katF and appR. The katF sequence indicated that its gene product is a novel sigma factor supposed to regulate expression of catalase HPII and exonuclease III (Mulvey and Loewen, 1989). We suggest that this novel sigma subunit of RNA polymerase defined by csi 2/katF/appR is a central early regulator of a large starvation/stationary phase regulon in E. coli and propose ‘rpoS’ (‘σs’) as appropriate designations.
    Type of Medium: Electronic Resource
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  • 3
    Publication Date: 2015-08-15
    Description: To evaluate the accuracy of Fe 3+ and Fe 2+ ratios in silicate glasses determined by Mössbauer spectroscopy, we examine in detail the temperature (47–293 K) of Mössbauer spectra for two andesitic glasses, one quenched at 1 atm, 1400 °C (VF3) and the other at 3.5 GPa, 1600 °C (M544). Variable-temperature Mössbauer spectra of these two glasses are used to characterize the recoilless fraction, f , by two different methods—a relative method (RM) based on the temperature dependence of the ratios of Fe 3+ and Fe 2+ Mössbauer doublets and the second based on the temperature dependence of the center shift (CS) of the doublets. The ratio of the recoilless fractions for Fe 3+ and Fe 2+ , C T , can then be used to adjust the observed area of the Mössbauer doublets into the Fe 3+ /Fe ratio in the sample. We also evaluated the contributions of non-paramagnetic components to the Fe in the glasses by determining the influence of applied magnetic field on sample magnetization. Finally, for the VF3 glass, we determined the Fe 3+ /Fe independently by wet chemical determination of the FeO content combined with careful electron microprobe analyses of total Fe. Recoilless fractions determined with the CS method (CSM) are significantly smaller than those determined with the relative method and suggest larger corrections to room-temperature Fe 3+ /Fe ratios. However, the RM determinations are believed to be more accurate because they depend less on the assumption of the Debye harmonic model and because they produce more nearly temperature-independent estimates of Fe 3+ /Fe ratios. Non-linear responses of sample magnetizations to applied magnetic fields indicate that the glasses contain a small (0.4–1.1% for VF3) superparamagnetic component that is most likely to be nanophase precipitates of (Fe,Mg)Fe 2 O 4 oxide, but corrections for this component have negligible influence on the total Fe 3+ /Fe determined for the glass. For the VF3 glass, the Fe 3+ /Fe produced by uncorrected room-temperature Mössbauer spectroscopy [0.685 ± 0.014 in two standard deviation (2)] agrees within 3% of that determined by wet chemistry (0.666 ± 0.030 in 2). The Fe 3+ /Fe corrected for recoilless fraction contributions is 0.634 ± 0.078(2), which is 7.5% lower than the uncorrected room-temperature ratio, but also agrees within 5% of wet chemical ratio. At least for this andesitic glass, the room-temperature determination of Fe 3+ /Fe is accurate within analytical uncertainty, but room-temperature Mössbauer determinations of Fe 3+ /Fe are always systematically higher compared to recoilless-fraction corrected ratios.
    Print ISSN: 0003-004X
    Electronic ISSN: 1945-3027
    Topics: Geosciences
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  • 4
    Publication Date: 2015-10-02
    Description: An updated and expanded data set that consists of 214 plagioclase-liquid equilibrium pairs from 40 experimental studies in the literature is used to recalibrate the thermodynamic model for the plagioclase-liquid hygrometer of Lange et al. (2009) ; the updated model is applicable to metaluminous and alkaline magmas. The model is based on the crystal-liquid exchange reaction between the anorthite (CaAl 2 Si 2 O 8 ) and albite (NaAlSi 3 O 8 ) components, and all available volumetric and calorimetric data for the pure end-member components are used in the revised model. The activities of the crystalline plagioclase components are taken from Holland and Powell (1992) . Of the 214 experiments, 107 are hydrous and 107 are anhydrous. Four criteria were applied for inclusion of experiments in the final data set: (1) crystallinities 〈30%; (2) pure-H 2 O fluid saturated; (3) compositional totals (including H 2 O component) of 97–101% for hydrous quenched glasses and 98.5–101 for anhydrous quenched glasses; and (4) melt viscosities ≤5.2 log 10 Pa·s. The final data set spans a wide range in liquid composition (45–80 wt% SiO 2 ; 1–10 wt% Na 2 O+K 2 O), plagioclase composition (An 17–95 ), temperature (750–1244 °C), pressure (0–350 MPa), and H 2 O content (0–8.3 wt%). The water solubility model of Zhang et al. (2007) was applied to all hydrous experiments. The standard error estimate on the hygrometer model is 0.35 wt% H 2 O, and all liquid compositions are fitted equally well. Application of the model as a thermometer recovers temperatures to within ±12°, on average. Tests of the hygrometer on anhydrous piston-cylinder experiments in the literature, not included in the regression, show that the model is accurate at all pressures where plagioclase is stable. Applications of the hygrometer are made to natural rhyolites (Bishop Tuff, Katmai, and TobaTuff) with reported H 2 O analyses in quartz-hosted melt inclusions from the literature; the results show agreement. Applications of the hygrometer/thermometer are additionally made to natural rhyolites from Iceland and Glass Mountain, California. The updated model can be downloaded either as a program in Excel format or as a MatLab script from the Data Repository.
    Print ISSN: 0003-004X
    Electronic ISSN: 1945-3027
    Topics: Geosciences
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  • 5
    Publication Date: 2017-04-04
    Description: A new olivine-melt thermometer based on the partitioning of Ni $$({D}_{\mathrm{Ni}}^{\mathrm{Ol/liq}})$$ , with a form similar to the Beattie (1993) $${D}_{\mathrm{Mg}}^{\mathrm{Ol/liq}}$$ thermometer, is presented in this study. It is calibrated on a data set of 123 olivine-melt equilibrium experiments from 16 studies in the literature that pass the following five filters: (1) 1 bar only, (2) analyzed totals between 99.0–101.0 wt% for olivine and 98.5–101.0 wt% for quenched glasses, (3) olivine is the only silicate phase in equilibrium with the melt, (4) the NiO concentration is ≥0.1 wt% in olivine and ≥0.01 wt% in quenched glass, and (5) no metallic phase is present other than the capsule. The final data set spans a wide range of temperatures (1170–1650 °C), liquid compositions (37–66 wt% SiO 2 ; 4–40 wt% MgO; 107–11 087 ppm Ni), and olivine compositions (Fo 36–100 ; 0.10–15.7 wt% NiO). The Ni-thermometer recovers the 123 experimental temperatures within ±29 °C (1), with an average residual of 0 °C. A re-fitted version of the Mg-thermometer of Beattie (1993) , calibrated on the same 123 experiments as for the Ni-thermometer, results in an average residual of 1 ± 26 °C (1). When both thermometers are applied to the same 123 experiments, the average T ( T Mg – T Ni ) is 1 ± 29 °C (1), which confirms that the Mg- and Ni-thermometers perform equally well over a wide range of anhydrous melt composition and temperature at 1 bar. The pressure dependence of the Ni-thermometer under crustal conditions (≤1 GPa) is shown to be negligible through comparison with experimental results from Matzen et al. (2013) , whereas the pressure dependence of the Mg-thermometer is up to 52 °C at ≤1 GPa ( Herzberg and O’Hara 2002 ). Therefore, neglecting the effect of pressure when applying both thermometers to basalts that crystallized olivine at crustal depths (≤1 GPa) is expected to lead to negative T ( T Mg – T Ni ) values (≤ –52 °C). Application of the two thermometers to nine mid-ocean ridge basalts results in an average T of –3°, consistent with shallow crystallization of olivine under nearly anhydrous conditions. In contrast, application of the two thermometers to 18 subduction-zone basalts leads to an average T of +112°; this large positive T value cannot be explained by the effect of pressure, temperature or anhydrous melt composition. It is well documented in the literature that $${D}_{\mathrm{Mg}}^{\mathrm{Ol/liq}}$$ is affected by dissolved water in the melt and that Mg-thermometers overestimate the temperature of hydrous basalts if an H 2 O correction is not applied (e.g., Putirka et al. 2007 ). Therefore, the reason why hydrous arc basalts have higher T ( T Mg – T Ni ) values than MORBs may be because $${D}_{\mathrm{Ni}}^{\mathrm{Ol/liq}}$$ is less sensitivite to water in the melt, which is supported by new Ni-partitioning results on three olivine-melt equilibrium experiments on a basaltic andesite with up to 5 wt% H 2 O. More hydrous experiments are needed to confirm that the Ni-thermometer can be applied to hydrous melts without a correction for H 2 O in the melt.
    Print ISSN: 0003-004X
    Electronic ISSN: 1945-3027
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  • 6
    Publication Date: 2007-10-01
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    Electronic ISSN: 1945-3027
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  • 7
    Publication Date: 2007-01-01
    Print ISSN: 0003-004X
    Electronic ISSN: 1945-3027
    Topics: Geosciences
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  • 8
    Publication Date: 2009-04-01
    Print ISSN: 0003-004X
    Electronic ISSN: 1945-3027
    Topics: Geosciences
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