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  • 1
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    Fault zone characteristics and basin complexity in the southern Salton Trough, California (2016)
    Geological Society of America (GSA)
    In: Geology
    Details
    Publication Date: 2016-08-23
    Description: Ongoing oblique slip at the Pacific–North America plate boundary in the Salton Trough produced the Imperial Valley (California, USA), a seismically active area with deformation distributed across a complex network of exposed and buried faults. To better understand the shallow crustal structure in this region and the connectivity of faults and seismicity lineaments, we used data primarily from the Salton Seismic Imaging Project to construct a three-dimensional P-wave velocity model down to 8 km depth and a velocity profile to 15 km depth, both at 1 km grid spacing. A V P = 5.65–5.85 km/s layer of possibly metamorphosed sediments within, and crystalline basement outside, the valley is locally as thick as 5 km, but is thickest and deepest in fault zones and near seismicity lineaments, suggesting a causative relationship between the low velocities and faulting. Both seismicity lineaments and surface faults control the structural architecture of the western part of the larger wedge-shaped basin, where two deep subbasins are located. We estimate basement depths, and show that high velocities at shallow depths and possible basement highs characterize the geothermal areas.
    Print ISSN: 0091-7613
    Electronic ISSN: 1943-2682
    Topics: Geosciences
    Published by Geological Society of America (GSA)
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  • 2
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    Dating of Pliocene Colorado River sediments: Implications for cosmogenic burial dating and the evolution of the lower Colorado River (2012)
    Geological Society of America (GSA)
    Details
    Publication Date: 2012-03-01
    Description: We applied cosmogenic 26Al/10Be burial dating to sedimentary deposits of the ancestral Colorado River. We compared cosmogenic burial ages of sediments to the age of an independently well-dated overlying basalt flow at one site, and also applied cosmogenic burial dating to sediments with less precise independent age constraints. All dated gravels yielded old ages that suggest several episodes of sediment burial over the past ~5.3 m.y. Comparison of burial ages to the overlying 4.4 Ma basalt yielded good agreement and suggests that under the most favorable conditions, cosmogenic burial dating can extend back 4–5 m.y. In contrast, results from other sites with more broadly independent age constraints highlight the complexities inherent in burial dating; these complexities arise from unknown and complicated burial histories, insufficient shielding, postburial production of cosmogenic isotopes by muons, and unknown initial 26Al/10Be ratios. Nevertheless, and in spite of the large range of burial ages and large uncertainties, we identify samples that provide reasonable burial age constraints on the depositional history of sediment along the lower ancestral Colorado River. These samples suggest possible sediment deposition and burial at ca. 5.3, 4.7, and 3.6 Ma.Our calculated basinwide erosion rate for sediment transported by the modern Colorado River (~187 mm k.y.-1) is higher than the modern erosion rates inferred from the historic sediment load (80–100 mm k.y.-1). In contrast, basinwide paleo-erosion rates calculated from Pliocene sediments are all under 40 mm k.y.-1 The comparatively lower denudation rates calculated for the Pliocene sediment samples are surprising given that the sampled time intervals include significant Pliocene aggradation and may include much incision of the Grand Canyon and its tributaries. This conflict may arise from extensive storage of sediment along the route of the Colorado River, slower paleobedrock erosion, or the inclusion of sediments that were derived preferentially from higher elevations in the watershed.
    Print ISSN: 0016-7606
    Electronic ISSN: 1943-2674
    Topics: Geosciences
    Published by Geological Society of America (GSA)
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  • 3
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    High-resolution three-dimensional imaging and analysis of rock falls in Yosemite Valley, California (2011)
    Geological Society of America (GSA)
    Details
    Publication Date: 2011-04-01
    Description: We present quantitative analyses of recent large rock falls in Yosemite Valley, California, using integrated high-resolution imaging techniques. Rock falls commonly occur from the glacially sculpted granitic walls of Yosemite Valley, modifying this iconic landscape but also posing significant potential hazards and risks. Two large rock falls occurred from the cliff beneath Glacier Point in eastern Yosemite Valley on 7 and 8 October 2008, causing minor injuries and damaging structures in a developed area. We used a combination of gigapixel photography, airborne laser scanning (ALS) data, and ground-based terrestrial laser scanning (TLS) data to characterize the rock-fall detachment surface and adjacent cliff area, quantify the rock-fall volume, evaluate the geologic structure that contributed to failure, and assess the likely failure mode. We merged the ALS and TLS data to resolve the complex, vertical to overhanging topography of the Glacier Point area in three dimensions, and integrated these data with gigapixel photographs to fully image the cliff face in high resolution. Three-dimensional analysis of repeat TLS data reveals that the cumulative failure consisted of a near-planar rock slab with a maximum length of 69.0 m, a mean thickness of 2.1 m, a detachment surface area of 2750 m2, and a volume of 5663 {+/-} 36 m3. Failure occurred along a surface-parallel, vertically oriented sheeting joint in a clear example of granitic exfoliation. Stress concentration at crack tips likely propagated fractures through the partially attached slab, leading to failure. Our results demonstrate the utility of high-resolution imaging techniques for quantifying far-range (〉1 km) rock falls occurring from the largely inaccessible, vertical rock faces of Yosemite Valley, and for providing highly accurate and precise data needed for rock-fall hazard assessment.
    Electronic ISSN: 1553-040X
    Topics: Geosciences
    Published by Geological Society of America (GSA)
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  • 4
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    Seasonal to multiannual marine ecosystem prediction with a global Earth system model (2019)
    American Association for the Advancement of Science (AAAS)
    In: Science
    Details
    Publication Date: 2019
    Description: 〈p〉Climate variations have a profound impact on marine ecosystems and the communities that depend upon them. Anticipating ecosystem shifts using global Earth system models (ESMs) could enable communities to adapt to climate fluctuations and contribute to long-term ecosystem resilience. We show that newly developed ESM-based marine biogeochemical predictions can skillfully predict satellite-derived seasonal to multiannual chlorophyll fluctuations in many regions. Prediction skill arises primarily from successfully simulating the chlorophyll response to the El Niño–Southern Oscillation and capturing the winter reemergence of subsurface nutrient anomalies in the extratropics, which subsequently affect spring and summer chlorophyll concentrations. Further investigations suggest that interannual fish-catch variations in selected large marine ecosystems can be anticipated from predicted chlorophyll and sea surface temperature anomalies. This result, together with high predictability for other marine-resource–relevant biogeochemical properties (e.g., oxygen, primary production), suggests a role for ESM-based marine biogeochemical predictions in dynamic marine resource management efforts.〈/p〉
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 5
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    Mechanics of relative and absolute displacements across normal faults, and implications for uplift and subsidence along the eastern escarpment of the Sierra Nevada, California (2014)
    Geological Society of America (GSA)
    In: Geosphere
    Details
    Publication Date: 2014-04-03
    Description: The magnitude of late Cenozoic rock uplift of the Sierra Nevada (California, USA) remains unresolved despite more than a century of investigation, with estimates ranging from essentially zero to ~3 km of uplift at the range crest. Two sets of two-dimensional end-member mechanical models bracket how normal faulting along the eastern escarpment of the Sierra Nevada contributed to uplift of the range over a time span of millions of years. The short-term models are based on dislocations in an elastic half-space. The long-term models involve thin elastic beams resting on an inviscid fluid. Both sets of models predict that if the regional topography were entirely a response to faulting along the eastern escarpment, then the bedrock floors immediately east of the range should consistently lie thousands of meters below sea level, instead of thousands of meters above sea level as they generally do. Both sets of analyses indicate that although faulting would lift the range crest, it would drop the rock east of the range-front faults at least as much, and perhaps much more; model results suggest that ~66%–85% of the current escarpment relief stems from subsidence of the grabens east of the Sierra Nevada, with only ~15%–34% resulting from crestal uplift. Our results strongly indicate that range-front faulting in the last 3–10 m.y. uplifted rock at the Sierra Nevada crest by hundreds of meters to as much as 1 km, and that this uplift was superposed on high topography that predated the origin of the eastern escarpment. These conclusions are compatible with diverse geologic observations and measurements.
    Electronic ISSN: 1553-040X
    Topics: Geosciences
    Published by Geological Society of America (GSA)
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  • 6
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    Molecular architecture of the rotary motor in ATP synthase (1999)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 1999-11-27
    Description: Adenosine triphosphate (ATP) synthase contains a rotary motor involved in biological energy conversion. Its membrane-embedded F0 sector has a rotation generator fueled by the proton-motive force, which provides the energy required for the synthesis of ATP by the F1 domain. An electron density map obtained from crystals of a subcomplex of yeast mitochondrial ATP synthase shows a ring of 10 c subunits. Each c subunit forms an alpha-helical hairpin. The interhelical loops of six to seven of the c subunits are in close contact with the gamma and delta subunits of the central stalk. The extensive contact between the c ring and the stalk suggests that they may rotate as an ensemble during catalysis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Stock, D -- Leslie, A G -- Walker, J E -- New York, N.Y. -- Science. 1999 Nov 26;286(5445):1700-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Medical Research Council Dunn Human Nutrition Unit, Hills Road, Cambridge CB2 2XY, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10576729" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphate/metabolism ; Catalysis ; Crystallization ; Crystallography, X-Ray ; Hydrogen Bonding ; Mitochondria/enzymology ; Models, Molecular ; Molecular Motor Proteins/*chemistry/metabolism ; Protein Conformation ; Protein Folding ; Protein Structure, Secondary ; Proton-Motive Force ; Proton-Translocating ATPases/*chemistry/metabolism ; Protons ; Saccharomyces cerevisiae/enzymology
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 7
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    The catalytic pathway of cytochrome p450cam at atomic resolution (2000)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2000-03-04
    Description: Members of the cytochrome P450 superfamily catalyze the addition of molecular oxygen to nonactivated hydrocarbons at physiological temperature-a reaction that requires high temperature to proceed in the absence of a catalyst. Structures were obtained for three intermediates in the hydroxylation reaction of camphor by P450cam with trapping techniques and cryocrystallography. The structure of the ferrous dioxygen adduct of P450cam was determined with 0.91 angstrom wavelength x-rays; irradiation with 1.5 angstrom x-rays results in breakdown of the dioxygen molecule to an intermediate that would be consistent with an oxyferryl species. The structures show conformational changes in several important residues and reveal a network of bound water molecules that may provide the protons needed for the reaction.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schlichting, I -- Berendzen, J -- Chu, K -- Stock, A M -- Maves, S A -- Benson, D E -- Sweet, R M -- Ringe, D -- Petsko, G A -- Sligar, S G -- GM31756/GM/NIGMS NIH HHS/ -- GM33775/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2000 Mar 3;287(5458):1615-22.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Max Planck Institute for Molecular Physiology, Department of Physical Biochemistry, Otto Hahn Strasse 11, 44227 Dortmund, Germany. ilme.schlichting@mpi-dortmund.mpg.de〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10698731" target="_blank"〉PubMed〈/a〉
    Keywords: Camphor/*chemistry/*metabolism ; Camphor 5-Monooxygenase/*chemistry/*metabolism ; Catalysis ; Crystallization ; Crystallography, X-Ray ; Electrons ; Ferric Compounds/chemistry/metabolism ; Ferrous Compounds/chemistry/metabolism ; Hydrogen Bonding ; Hydroxylation ; Ligands ; Models, Molecular ; Molecular Conformation ; Oxygen/chemistry/metabolism ; Protein Conformation ; Protein Structure, Secondary ; Protons ; Pseudomonas putida/enzymology ; Water/chemistry/metabolism
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 8
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    Immune response and myoblasts that express Fas ligand (1997)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 1997-12-31
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kang, S M -- Hoffmann, A -- Le, D -- Springer, M L -- Stock, P G -- Blau, H M -- F32 HL08991/HL/NHLBI NIH HHS/ -- R01-CA59717/CA/NCI NIH HHS/ -- R01-HD18179/HD/NICHD NIH HHS/ -- etc. -- New York, N.Y. -- Science. 1997 Nov 14;278(5341):1322-4.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/9411754" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antigens, CD95/biosynthesis ; Apoptosis ; Cell Differentiation ; Cell Transplantation ; Fas Ligand Protein ; *Graft Rejection ; Immune Tolerance ; Islets of Langerhans/cytology ; *Islets of Langerhans Transplantation ; Membrane Glycoproteins/genetics/*physiology ; Mice ; Mice, Inbred C3H ; Mice, Inbred C57BL ; Muscle Fibers, Skeletal/*cytology/metabolism ; Muscle, Skeletal/*cytology/metabolism ; Neutrophils/*immunology ; Transfection
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 9
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    Evidence from 18S ribosomal RNA sequences that lampreys and hagfishes form a natural group (1992)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 1992-08-07
    Description: Lampreys and hagfishes (cyclostomes) traditionally were considered to be a natural (monophyletic) group. Recently, the consensus of opinion, based largely on morphological analyses, has shifted to a view that lampreys are more closely related to jawed vertebrates (gnathostomes) than to hagfishes. Phylogenetic comparisons of 18S ribosomal RNA sequences from two hagfishes, two lampreys, a tunicate, a lancelet, and a number of gnathostomes support the monophyly of the cyclostomes. These data force a reassessment of several features of early vertebrate evolution.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Stock, D W -- Whitt, G S -- New York, N.Y. -- Science. 1992 Aug 7;257(5071):787-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Ecology, Ethology, and Evolution, University of Illinois, Urbana 61801.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/1496398" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Base Sequence ; DNA, Ribosomal/*genetics ; Genetic Variation ; Hagfishes/classification/*genetics ; Lampreys/classification/*genetics ; Molecular Sequence Data ; Oligodeoxyribonucleotides ; *Phylogeny ; Polymerase Chain Reaction/methods ; RNA, Ribosomal, 18S/*genetics
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 10
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    Predicting coiled coils from protein sequences (1991)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 1991-05-24
    Description: The probability that a residue in a protein is part of a coiled-coil structure was assessed by comparison of its flanking sequences with sequences of known coiled-coil proteins. This method was used to delineate coiled-coil domains in otherwise globular proteins, such as the leucine zipper domains in transcriptional regulators, and to predict regions of discontinuity within coiled-coil structures, such as the hinge region in myosin. More than 200 proteins that probably have coiled-coil domains were identified in GenBank, including alpha- and beta-tubulins, flagellins, G protein beta subunits, some bacterial transfer RNA synthetases, and members of the heat shock protein (Hsp70) family.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lupas, A -- Van Dyke, M -- Stock, J -- AI20980/AI/NIAID NIH HHS/ -- New York, N.Y. -- Science. 1991 May 24;252(5009):1162-4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Biology, Princeton University, NJ 08544.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2031185" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Amino Acids/chemistry ; Animals ; Databases, Factual ; Humans ; Probability ; *Protein Conformation ; Proteins/chemistry/*genetics
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
    Published by American Association for the Advancement of Science (AAAS)
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