ALBERT

Description: We present seawater Cd isotopic compositions in five depth profiles and a continuous surface water transect, from 50 degrees S to the Equator, in the western South Atlantic, sampled during GEOTRACES cruise 74JC057 (GA02 section, Leg 3), and investigate the mechanisms governing Cd isotope cycling in the upper and deep ocean. The depth profiles generally display high epsilon Cd-112/110 at the surface and decrease with increasing depth toward values typical of Antarctic Bottom Water (AABW). However, at stations north of the Subantarctic Front, the decrease in epsilon Cd-112/110 is interrupted by a shift to values intermediate between those of surface and bottom waters, which occurs at depths occupied by North Atlantic Deep Water (NADW). This pattern is associated with variations in Cd concentration from low surface values to a maximum at mid-depths and is attributed to preferential utilization of light Cd by phytoplankton in the surface ocean. Our new results show that in this region Cd-deficient waters do not display the extreme, highly fractionated epsilon Cd-112/110 reported in some earlier studies from other oceanic regions. Instead, in the surface and subsurface southwest (SW) Atlantic, when [Cd] drops below 0.1 nmol kg(-1), epsilon Cd-112/110 are relatively homogeneous and cluster around a value of +3.7, in agreement with the mean value of 3.8 +/- 3.3 (2SD, n = 164) obtained from a statistical evaluation of the global ocean Cd isotope dataset. We suggest that Cd-deficient surface waters may acquire their Cd isotope signature via sorption of Cd onto organic ligands, colloids or bacteriallpicoplankton extracellular functional groups. Alternatively, we show that an open system, steady-state model is in good accord with the observed Cd isotope systematics in the upper ocean north of the Southern Ocean. The distribution of epsilon Cd-112/110 in intermediate and deep waters is consistent with the water mass distribution, with the north-south variations reflecting changes in the mixing proportion of NADW and either AABW or AAIW depending on the depth. Overall, the SW Atlantic Cd isotope dataset demonstrates that the large-scale ocean circulation exerts the primary control on epsilon(112/110) Cd cycling in the global deep ocean.

Description: Complex multifault earthquake ruptures involving secondary faults emphasize the necessity to characterize their seismogenic potential better and study their relationship with major faults to improve the seismic hazard assessment of a region. High-resolution geophysical data were interpreted to make a detailed characterization of the Averroes Fault and the North Averroes Faults, which are poorly known secondary right-lateral strike-slip faults located in the central part of the Alboran Sea (western Mediterranean). These faults appear to have evolved since the Pliocene as part of a distributed dextral strike-slip shear zone in response to local strain engendered by the diverging movement of the Carboneras Fault to the north, and the Yusuf and Alboran Ridge faults to the south. In addition, the architecture of these faults suggests that the Averroes Fault may eventually link with the Yusuf fault, thus leading to a higher seismogenic potential. Therefore, these secondary faults represent a hitherto unrecognized seismogenic hazard since they could produce earthquakes up to moment magnitude (Mw) 7.6. Our results highlight the importance of the role played by secondary faults in a specific kinematic framework. Their reciprocal linkage and their mechanical relationship with the main faults could lead to future complex fault ruptures. This information could improve fault source and earthquake models used in seismic and tsunami hazard assessment in this and similar regions.

Description: We have compared 14 different sediment incubation chambers, most of them were used on bottom landers. Measurements of mixing time, pressure gradients at the bottom and Diffusive Boundary Layer thickness (DBL) were used to describe the hydrodynamic properties of the chambers and sediment–water solute fluxes of silicate (34 replicates) and oxygen (23 replicates) during three subsequently repeated incubation experiments on a homogenized, macrofauna-free sediment. The silicate fluxes ranged from 0.24 to 1.01 mmol m−2 day−1 and the oxygen fluxes from 9.3 to 22.6 mmol m−2 day−1. There was no statistically significant correlation between measured fluxes and the chamber design or between measured fluxes and hydrodynamic settings suggesting that type of chamber was not important in these flux measurements. For verification of sediment homogeneity, 61 samples of meiofauna were taken and identified to major taxa. In addition, 13 sediment cores were collected, sectioned into 5–10-mm slices and separated into pore water and solid phase. The pore water profiles of dissolved silicate were used to calculate diffusive fluxes of silicate. These fluxes ranged from 0.63 to 0.87 mmol m−2 day−1. All of the collected sediment parameters indicated that the sediment homogenization process had been satisfactorily accomplished. Hydrodynamic variations inside and between chambers are a reflection of the chamber design and the stirring device. In general, pump stirrers with diffusers give a more even distribution of bottom currents and DBL thicknesses than paddle wheel-type stirrers. Most chambers display no or low static differential pressures when the water is mixed at rates of normal use. Consequently, there is a low risk of creating stirrer induced pressure effects on the measured fluxes. Centrally placed stirrers are preferable to off-center placed stirrers which are more difficult to map and do not seem to give any hydrodynamic advantages. A vertically rotating stirrer gives about five times lower static differential pressures at the same stirring speed as the same stirrer mounted horizontally. If the aim is to simulate or mimic resuspension at high flow velocities, it cannot be satisfactorily done in a chamber using a horizontal (standing) rotating impeller (as is the case for most chambers in use) due to the creation of unnatural conditions, i.e. large static differential pressures and pre-mature resuspension at certain locations in the chamber.

Description: Marine gateways play a critical role in the exchange of water, heat, salt and nutrients between oceans and seas. As a result, changes in gateway geometry can significantly alter both the pattern of global ocean circulation and associated heat transport and climate, as well as having a profound impact on local environmental conditions. Mediterranean-Atlantic marine corridors that pre-date the modern Gibraltar Strait, closed during the Late Miocene and are now exposed on land in northern Morocco and southern Spain. The restriction and closure of these Miocene connections resulted in extreme salinity fluctuations in the Mediterranean, leading to the precipitation of thick evaporites. This event is known as the Messinian Salinity Crisis (MSC). The evolution and closure of the Mediterranean-Atlantic gateways are a critical control on the MSC, but at present the location, geometry and age of these gateways are still highly controversial, as is the impact of changing Mediterranean outflow on Northern Hemisphere circulation. Here, we present a comprehensive overview of the evolution of the Late Miocene gateways and the nature of Mediterranean-Atlantic exchange as deduced from published studies focussed both on the sediments preserved within the fossil corridors and inferences that can be derived from data in the adjacent basins. We also consider the possible impact of evolving exchange on both the Mediterranean and global climate and highlight the main enduring challenges for reconstructing past Mediterranean-Atlantic exchange.

Description: Highlights: • GEOTRACES releases its first integrated and quality controlled Intermediate Data Product 2014 (IDP2014). • The IDP2014 digital data are available at http://www.bodc.ac.uk/geotraces/data/idp2014/ in 4 different formats. • The eGEOTRACES Electronic Atlas at http://egeotraces.org/ provides 329 section plots and 90 animated 3D tracer scenes. • The new 3D scenes provide geographical and bathymetric context crucial for tracer assessment and interpretation. Abstract: The GEOTRACES Intermediate Data Product 2014 (IDP2014) is the first publicly available data product of the international GEOTRACES programme, and contains data measured and quality controlled before the end of 2013. It consists of two parts: (1) a compilation of digital data for more than 200 trace elements and isotopes (TEIs) as well as classical hydrographic parameters, and (2) the eGEOTRACES Electronic Atlas providing a strongly inter-linked on-line atlas including more than 300 section plots and 90 animated 3D scenes. The IDP2014 covers the Atlantic, Arctic, and Indian oceans, exhibiting highest data density in the Atlantic. The TEI data in the IDP2014 are quality controlled by careful assessment of intercalibration results and multi-laboratory data comparisons at cross-over stations. The digital data are provided in several formats, including ASCII spreadsheet, Excel spreadsheet, netCDF, and Ocean Data View collection. In addition to the actual data values the IDP2014 also contains data quality flags and 1-σ data error values where available. Quality flags and error values are useful for data filtering. Metadata about data originators, analytical methods and original publications related to the data are linked to the data in an easily accessible way. The eGEOTRACES Electronic Atlas is the visual representation of the IDP2014 data providing section plots and a new kind of animated 3D scenes. The basin-wide 3D scenes allow for viewing of data from many cruises at the same time, thereby providing quick overviews of large-scale tracer distributions. In addition, the 3D scenes provide geographical and bathymetric context that is crucial for the interpretation and assessment of observed tracer plumes, as well as for making inferences about controlling processes.

Description: We review and evaluate the design and operation of twenty-seven known autonomous benthic chamber and profiling lander instruments. We have made a detailed comparison of the different existing lander designs and discuss the relative strengths and weaknesses of each. Every aspect of a lander deployment, from preparation and launch to recovery and sample treatment is presented and compared. It is our intention that this publication will make it easier for future lander builders to choose a design suitable for their needs and to avoid unnecessary mistakes.

Description: Regeneration is an essential process for all multicellular organisms, allowing them to recover effectively from internal and external injury. This process has been studied extensively in a medical context in vertebrates, with pathways often investigated mechanistically, both to derive increased understanding and as potential drug targets for therapy. Several species from other parts of the metazoan tree of life, including Hydra, planarians and echinoderms, noted for their regenerative capabilities, have previously been targeted for study. Less well-documented for their regenerative abilities are sponges. This is surprising, as they are both one of the earliest-branching extant metazoan phyla on Earth, and are rapidly able to respond to injury. Their sessile lifestyle, lack of an external protective layer, inability to respond to predation and filter-feeding strategy all mean that regeneration is often required. In particular the demosponge genus Halisarca has been noted for its fast cell turnover and ability to quickly adjust its cell kinetic properties to repair damage through regeneration. However, while the rate and structure of regeneration in sponges has begun to be investigated, the molecular mechanisms behind this ability are yet to be catalogued. Here we describe the assembly of a reference transcriptome for Halisarca caerulea, along with additional transcriptomes noting response to injury before, shortly following (2 h post-), and 12 h after trauma. RNAseq reads were assembled using Trinity, annotated, and samples compared, to allow initial insight into the transcriptomic basis of sponge regenerative processes. These resources are deep, with our reference assembly containing 〉 92.6% of the BUSCO Metazoa set of genes, and well-assembled (N50s of 836, 957, 1688 and 2032 for untreated, 2 h, 12 h and reference transcriptomes respectively), and therefore represent excellent qualitative resources as a bedrock for future study. The generation of transcriptomic resources from sponges before and following deliberate damage has allowed us to study particular pathways within this species responsible for repairing damage. We note particularly the involvement of the Wnt cascades in this process in this species, and detail the contents of this cascade, along with cell cycle, extracellular matrix and apoptosis-linked genes in this work. This resource represents an initial starting point for the continued development of this knowledge, given H. caerulea's ability to regenerate and position as an outgroup for comparing the process of regeneration across metazoan lineages. With this resource in place, we can begin to infer the regenerative capacity of the common ancestor of all extant animal life, and unravel the elements of regeneration in an often-overlooked clade.

Description: We investigate the spatiotemporal variability of the source water masses (i.e., varieties of Subtropical Mode Water – STMW) that contribute to the South Atlantic Central Water (SACW) in the South Atlantic Ocean. Thus, the composition of the SACW layer is updated. For this investigation, we applied an optimum multiparameter (OMP) analysis and used the conservative and semi-conservative parameters available from the World Ocean Database and Argo floats for the South Atlantic Ocean. The STMW18 (at upper levels) sourced in the central and eastern regions of the South Atlantic and the STMW12 (at lower levels) sourced at the boundaries of the South Atlantic Subtropical Front are the main contributors to the SACW. Although also important, the contribution of STMW14 (sourced in the Brazil-Malvinas Confluence zone) is regionally confined by the Brazil Current recirculation gyre. The contributions from Subtropical Indian Mode Water (SIMW) increased westward along the Agulhas Corridor, while the contribution from STMW12 decreased. The relatively low contribution from SIMW matches the results of previous studies regarding the influence of these waters in the climatology of the South Atlantic Ocean. However, it cannot be ignored, since the results bring new light to further investigations of the mixing processes in the ocean interior of the South Atlantic Ocean.

Description: The GEOTRACES Intermediate Data Product 2017 (IDP2017) is the second publicly available data product of the international GEOTRACES programme, and contains data measured and quality controlled before the end of 2016. The IDP2017 includes data from the Atlantic, Pacific, Arctic, Southern and Indian oceans, with about twice the data volume of the previous IDP2014. For the first time, the IDP2017 contains data for a large suite of biogeochemical parameters as well as aerosol and rain data characterising atmospheric trace element and isotope (TEI) sources. The TEI data in the IDP2017 are quality controlled by careful assessment of intercalibration results and multi-laboratory data comparisons at crossover stations. The IDP2017 consists of two parts: (1) a compilation of digital data for more than 450 TEIs as well as standard hydrographic parameters, and (2) the eGEOTRACES Electronic Atlas providing an on-line atlas that includes more than 590 section plots and 130 animated 3D scenes. The digital data are provided in several formats, including ASCII, Excel spreadsheet, netCDF, and Ocean Data View collection. Users can download the full data packages or make their own custom selections with a new on-line data extraction service. In addition to the actual data values, the IDP2017 also contains data quality flags and 1-σ data error values where available. Quality flags and error values are useful for data filtering and for statistical analysis. Metadata about data originators, analytical methods and original publications related to the data are linked in an easily accessible way. The eGEOTRACES Electronic Atlas is the visual representation of the IDP2017 as section plots and rotating 3D scenes. The basin-wide 3D scenes combine data from many cruises and provide quick overviews of large-scale tracer distributions. These 3D scenes provide geographical and bathymetric context that is crucial for the interpretation and assessment of tracer plumes near ocean margins or along ridges. The IDP2017 is the result of a truly international effort involving 326 researchers from 22 countries. This publication provides the critical reference for unpublished data, as well as for studies that make use of a large cross-section of data from the IDP2017.

Description: Absolute abundances (concentrations) of dinoflagellate cysts are often determined through the addition of Lycopodium clavatum marker-grains as a spike to a sample before palynological processing. An interlaboratory calibration exercise was set up in order to test the comparability of results obtained in different laboratories, each using its own preparation method. Each of the 23 laboratories received the same amount of homogenized splits of four Quaternary sediment samples. The samples originate from different localities and consisted of a variety of lithologies. Dinoflagellate cysts were extracted and counted, and relative and absolute abundances were calculated. The relative abundances proved to be fairly reproducible, notwithstanding a need for taxonomic calibration. By contrast, excessive loss of Lycopodium spores during sample preparation resulted in non-reproducibility of absolute abundances. Use of oxidation, KOH, warm acids, acetolysis, mesh sizes larger than 15 μm and long ultrasonication (N1 min) must be avoided to determine reproducible absolute abundances. The results of this work therefore indicate that the dinoflagellate cyst worker should make a choice between using the proposed standard method which circumvents critical steps, adding Lycopodium tablets at the end of the preparation and using an alternative method.