ALBERT

Description: Ice nucleation is a means by which the deposition of an airborne microorganism can be accelerated under favourable meteorological conditions. Analysis of 56 snow samples collected at the high-altitude observatory Jungfraujoch (3580 m a.s.l.) revealed an order-of-magnitude-larger dynamic range of ice-nucleating particles active at −8 °C (INPs−8) compared to the total number of bacterial cells (of which on average 60 % was alive). This indicates a shorter atmospheric residence time for INPs−8. Furthermore, concentrations of INPs−8 decreased much faster, with an increasing fraction of water precipitated from the air mass prior to sampling, than the number of total bacterial cells. Nevertheless, at high wind speeds (〉 50 km h−1) the ratio of INPs−8 to total bacterial cells largely remained in a range between 10−2 and 10−3, independent of prior precipitation, likely because of recent injections of particles in regions upwind. Based on our field observations, we conclude that ice nucleators travel shorter legs of distance with the atmospheric water cycle than the majority of bacterial cells. A prominent ice-nucleating bacterium, Pseudomonas syringae, has been previously supposed to benefit from this behaviour as a means to spread via the atmosphere and to colonise new host plants. Therefore, we targeted this bacterium with a selective cultivation approach. P. syringae was successfully isolated for the first time at such an altitude in 3 of 13 samples analysed. Colony-forming units of this species constituted a minor fraction (10−4) of the numbers of INPs−8 in these samples. Overall, our findings expand the geographic range of habitats where this bacterium has been found and corroborate theories on its robustness in the atmosphere and its propensity to spread to colonise new habitats.

Description: Coastal seas may account for more than 75 % of global oceanic methane emissions. There, methane is mainly produced microbially in anoxic sediments from which it can escape to the overlying water column. Aerobic methane oxidation (MOx) in the water column acts as a biological filter, reducing the amount of methane that eventually evades to the atmosphere. The efficiency of the MOx filter is potentially controlled by the availability of dissolved methane and oxygen, as well as temperature, salinity, and hydrographic dynamics, and all of these factors undergo strong temporal fluctuations in coastal ecosystems. In order to elucidate the key environmental controls, specifically the effect of oxygen availability, on MOx in a seasonally stratified and hypoxic coastal marine setting, we conducted a 2-year time-series study with measurements of MOx and physico-chemical water column parameters in a coastal inlet in the south-western Baltic Sea (Eckernförde Bay). We found that MOx rates generally increased toward the seafloor, but were not directly linked to methane concentrations. MOx exhibited a strong seasonal variability, with maximum rates (up to 11.6 nmol L−1 d−1) during summer stratification when oxygen concentrations were lowest and bottom-water temperatures were highest. Under these conditions, 2.4–19.0 times more methane was oxidized than emitted to the atmosphere, whereas about the same amount was consumed and emitted during the mixed and oxygenated periods. Laboratory experiments with manipulated oxygen concentrations in the range of 0.2–220 µmol L−1 revealed a submicromolar oxygen optimum for MOx at the study site. In contrast, the fraction of methane–carbon incorporation into the bacterial biomass (compared to the total amount of oxidized methane) was up to 38-fold higher at saturated oxygen concentrations, suggesting a different partitioning of catabolic and anabolic processes under oxygen-replete and oxygen-starved conditions, respectively. Our results underscore the importance of MOx in mitigating methane emission from coastal waters and indicate an organism-level adaptation of the water column methanotrophs to hypoxic conditions.

Description: Lacustrine sediments are important sites of fixed-nitrogen (N) elimination through the reduction of nitrate to N2 by denitrifying bacteria, and they are thus critical for the mitigation of anthropogenic loading of fixed N in lakes. In contrast, dissimilatory nitrate reduction to ammonium (DNRA) retains bioavailable N within the system, promoting internal eutrophication. Both processes are thought to occur under oxygen-depleted conditions, but the exact O2 concentration thresholds particularly of DNRA inhibition are uncertain. In O2 manipulation laboratory experiments with dilute sediment slurries and 15NO3- additions at low- to sub-micromolar O2 levels, we investigated how, and to what extent, oxygen controls the balance between DNRA and denitrification in lake sediments. In all O2-amended treatments, oxygen significantly inhibited both denitrification and DNRA compared to anoxic controls, but even at relatively high O2 concentrations (≥70 µmol L−1), nitrate reduction by both denitrification and DNRA was observed, suggesting a relatively high O2 tolerance. Nevertheless, differential O2 control and inhibition effects were observed for denitrification versus DNRA in the sediment slurries. Below 1 µmol L−1 O2, denitrification was favoured over DNRA, while DNRA was systematically more important than denitrification at higher O2 levels. Our results thus demonstrate that O2 is an important regulator of the partitioning between N loss and N recycling in sediments. In natural environments, where O2 concentrations change in near-bottom waters on an annual scale (e.g., overturning lakes with seasonal anoxia), a marked seasonality with regards to internal N eutrophication versus efficient benthic fixed-N elimination can be expected.

Description: Ice nucleation is a means by which the deposition of an airborne microorganism can be accelerated under favourable meteorological conditions. Analysis of 56 snow samples collected at the high altitude observatory Jungfraujoch (3580 m a.s.l.) revealed an order of magnitude larger dynamic range of ice nucleating particles active at −8 °C (INPs−8) compared to the total number of bacterial cells (60 % was on average living). This indicates a shorter atmospheric residence time for INPs−8. Furthermore, concentrations of INPs-8 decreased much faster, with an increasing fraction of water precipitated from the air mass prior to sampling, than the number of total bacterial cells. Nevertheless, at high wind speeds (〉 50 km h−1) the ratio of INPs−8 to total bacterial cells largely remained in a range between 10−2 to 10−3, independent of prior precipitation, perhaps because of recent injections of particles in regions upwind. Based on our field observations, we conclude that ice nucleators travel shorter legs of distance with the atmospheric water cycle than the majority of bacterial cells. Pseudomonas syringae, a prominent ice nucleating bacterium, was successfully isolated from 3 of 13 samples analysed. Colony forming units of this species constituted a minor fraction (10−4) of the numbers of INPs−8 in these samples. Overall, our findings expand the geographic range of habitats where this bacterium has been found and corroborates theories on its robustness in the atmosphere and its propensity to spread and to colonise new plants.

Description: Coastal seas may account for more than 75 % of global oceanic methane emissions. There, methane is mainly produced microbially in anoxic sediments from where it can escape to the overlying water column. Aerobic methane oxidation (MOx) in the water column acts as a biological filter reducing the amount of methane that eventually evades to the atmosphere. The efficiency of the MOx filter is potentially controlled by the availability of dissolved methane and oxygen, as well as temperature, salinity, and hydrographic dynamics, and all of these factors undergo strong temporal fluctuations in coastal ecosystems. In order to elucidate the key environmental controls, specifically the effect of oxygen availability, on MOx in a seasonally stratified and hypoxic coastal marine setting, we conducted a 2-year time-series study with measurements of MOx and physico-chemical water column parameters in a coastal inlet in the southwestern Baltic Sea (Eckernförde Bay). We found that MOx rates always increased toward the seafloor, but were not directly linked to methane concentrations. MOx exhibited a strong seasonal variability, with maximum rates (up to 11.6 nmol l−1 d−1) during summer stratification when oxygen concentrations were lowest and bottom-water temperatures were highest. Under these conditions, 70–95 % of the sediment-released methane was oxidized, whereas only 40–60 % were consumed during the mixed and oxygenated periods. Laboratory experiments with manipulated oxygen concentrations in the range of 0.2–220 µmol l−1 revealed a sub-micromolar oxygen-optimum for MOx at the study site. In contrast, the fraction of methane-carbon incorporation into the bacterial biomass (compared to the total amount of oxidised methane) was up to 38-fold higher at saturated oxygen concentrations, suggesting a different partitioning of catabolic and anabolic processes under oxygen-replete and oxygen-starved conditions, respectively. Our results underscore the importance of MOx in mitigating methane emission from coastal waters and indicate an organism-level adaptation of the water column methanotrophs to hypoxic conditions.

Description: Lacustrine sediments are important sites of fixed nitrogen (N) elimination through the reduction of nitrate to N2 by denitrifying bacteria, and are thus critical for the mitigation of anthropogenic loading of fixed N in lakes. In contrast, dissimilatory nitrate reduction to ammonium (DNRA) retains bioavailable N within the system, promoting internal eutrophication. Both processes are thought to occur under oxygen-depleted conditions, but the exact O2 thresholds particularly of DNRA inhibition are uncertain. In O2-manipulation laboratory experiments with dilute sediment slurries and 15NO3− additions at low- to sub-micromolar O2 levels, we investigated how, and to what extent, oxygen controls the balance between DNRA and denitrification in lake sediments. In all O2-amended treatments, oxygen significantly inhibited both denitrification and DNRA compared to anoxic controls, but even at relatively high O2 concentrations (≥ 70 µmol L−1), nitrate reduction by both denitrification and DNRA was observed, suggesting a relatively high O2 tolerance. Nevertheless, differential O2 control and inhibition effects were observed for denitrification versus DNRA in the sediment slurries. Below 1 µmol L−1 O2, denitrification was favored over DNRA, while DNRA was systematically more important than denitrification at higher O2 levels. Our results thus demonstrate that O2 is an important regulator of the partitioning between N-loss and N-recycling in sediments. In natural environments, where O2 concentrations change in near bottom waters on an annual scale (e.g., overturning lakes with seasonal anoxia), a marked seasonality with regards to internal N eutrophication versus efficient benthic fixed N elimination can be expected.