ALBERT

All Library Books, journals and Electronic Records Telegrafenberg

X
feed icon rss

Your email was sent successfully. Check your inbox.

An error occurred while sending the email. Please try again.

Proceed reservation?

Export
  • 1
    facet.materialart.
    Unknown
    Optical backscattering is correlated with phytoplankton carbon across the Atlantic Ocean. (2013)
    Wiley
    Details
    Publication Date: 2013-02-16
    Description: [1]  Phytoplankton are an important component of the oceanic carbon cycle. Yet, due to methodological constraints, the carbon biomass of phytoplankton is poorly characterised. To address this limitation, we have explored the bio-optical relationship between in-situ measurements of the particle backscattering coefficient at 470 nm, b bp (470), and the phytoplankton carbon concentration for cells with diameter less than 20  μ m (C f ). We found a significant relationship between b bp (470) and C f for Atlantic oceanic waters with chlorophyll-a concentrations less than 0.4 mg m -3 (or b bp (470) 〈 0.003 m -1 ). This relationship could be used to estimate C f from data collected by in-situ autonomous platforms and from remote sensing of ocean colour.
    Print ISSN: 0094-8276
    Electronic ISSN: 1944-8007
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
    PAPER CURRENT
  • 2
    facet.materialart.
    Unknown
    Optical properties of the Dead Sea (2013)
    Wiley
    Details
    Publication Date: 2013-02-13
    Description: [1]  The Dead Sea, located in the rift valley between Jordan and Israel, is a hypersaline lake, resulting in unique biogeochemistry and optical properties. In the spring of 2004 we conducted two days of physical and optical measurements in the lake. Because of the significant effect of dissolved salts onthe optical propertiesof water,our analysis required a novel processing approach to obtain dissolved and total inherent optical properties from the measurements. In addition, we show that the lake's salinity can be estimated from measurements of hyper-spectral absorption or attenuation spectra in the red and infrared parts of the spectrum, using published values of specific absorption of dissolved NaCl, despite the fact that the lake's salt chemistry is complex. In situ observations demonstrated that the lake has a two-layer structure with a warm and more turbid layer at the top 20-30 m and a clearer colder layer below. Both the particulate and dissolved absorption are well approximated by exponentially decreasing functions with the spectral slope of the particulate absorption about half that of the dissolved fraction and consistent with other aquatic environments. Both have relatively low and similar magnitudes in the blue (O(0.15 m -1 )). Mean particle size was observed to increase with depth consistent with precipitating salt crystals (observed in past campaigns) shown here toplay a major role in the lake's optical properties.
    Print ISSN: 0148-0227
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
    PAPER CURRENT
  • 3
    facet.materialart.
    Unknown
    Bio-optical observations of the 2004 Labrador Sea phytoplankton bloom (2011)
    Wiley
    Details
    Publication Date: 2011-11-24
    Description: A unique time series of moored bio-optical measurements documented the 2004 spring-summer bloom in the southern Labrador Sea. In situ and satellite chlorophyll data show that chlorophyll levels in the 2004 bloom were at the upper end of those typically observed in this region. Satellite chlorophyll and profiling float temperature/salinity data show that the main bloom, which typically peaks in June/July, is often preceded by ephemeral mixed layer shoaling and a lesser, short-lived bloom in May; this was the case in 2004. The particulate backscatter to beam attenuation ratio (bbp[470 nm]/Cp[660 nm]) showed peaks in the relative abundance of small particles at bloom initiation and during the decline of the bloom, while larger particles dominated during the bloom. Chlorophyll/Cp and bbp/chlorophyll were correlated with carbon export and dominated by changes in the pigment per cell associated with lower light levels due to enhanced attenuation of solar radiation during the bloom. An NPZ (nutrients, phytoplankton, zooplankton) model captured the phytoplankton bloom and an early July peak in zooplankton. Moored acoustic Doppler current profiler (ADCP) data showed an additional mid-June peak in zooplankton biomass which was attributed to egg-laying copepods. The data reported here represent one of the few moored time series of Cp, bbp and chlorophyll extending over several months in an open ocean region. Interpretation of data sets such as this will become increasingly important as these deployments become more commonplace via ocean observing systems. Moreover, these data contribute to the understanding of biological-physical coupling in a biogeochemically important, yet poorly studied region.
    Print ISSN: 0148-0227
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
    PAPER CURRENT
  • 4
    facet.materialart.
    Unknown
    Observations of the sensitivity of beam attenuation to particle size in a coastal bottom boundary layer (2011)
    Wiley
    Details
    Publication Date: 2011-02-16
    Description: The goal of this study was to test the hypothesis that the aggregated state of natural marine particles constrains the sensitivity of optical beam attenuation to particle size. An instrumented bottom tripod was deployed at the 12-m node of the Martha's Vineyard Coastal Observatory to monitor particle size distributions, particle size-versus-settling-velocity relationships, and the beam attenuation coefficient (cp) in the bottom boundary layer in September 2007. An automated in situ filtration system on the tripod collected 24 direct estimates of suspended particulate mass (SPM) during each of five deployments. On a sampling interval of 5 min, data from a Sequoia Scientific LISST 100x Type B were merged with data from a digital floc camera to generate suspended particle volume size distributions spanning diameters from approximately 2 μm to 4 cm. Diameter-dependent densities were calculated from size-versus-settling-velocity data, allowing conversion of the volume size distributions to mass distributions, which were used to estimate SPM every 5 min. Estimated SPM and measured cp from the LISST 100x were linearly correlated throughout the experiment, despite wide variations in particle size. The slope of the line, which is the ratio of cp to SPM, was 0.22 g m−2. Individual estimates of cp:SPM were between 0.2 and 0.4 g m−2 for volumetric median particle diameters ranging from 10 to 150 μm. The wide range of values in cp:SPM in the literature likely results from three factors capable of producing factor-of-two variability in the ratio: particle size, particle composition, and the finite acceptance angle of commercial beam-transmissometers.
    Print ISSN: 0148-0227
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
    PAPER CURRENT
  • 5
    facet.materialart.
    Unknown
    Response to comment by S. Chiswell (2013)
    Wiley
    Details
    Publication Date: 2013-11-28
    Description: [1]   Chiswell [2013] suggests that some of the conclusions drawn by Behrenfeld et al . [2013] are likely erroneous because of (1) the method used to calculate specific net biomass accumulation rates ( r ; d -1 ) over the seasonal cycle, (2) inconsistencies in the calculation of r and phytoplankton specific cell division rate, μ (d -1 ), and (3) uncertainties in the extrapolation of satellite data to the depth of the seasonal thermocline. Each of these concerns is addressed in the following subsections. We begin with a simple culture-based analogy that clarifies why switching between concentration-based and inventory-based expressions is required for calculating r when the mixed layer varies between shoaling and deepening conditions. This analogy is followed by a more specific mathematical treatment. We then explain why our previous comparisons between r and μ provide a conservative estimate of predator-prey coupling, followed by a discussion of uncertainties in satellite-based assessments of mixed layer phytoplankton biomass.
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
    PAPER CURRENT
  • 6
    facet.materialart.
    Unknown
    A systems biology approach identified different regulatory networks targeted by KSHV miR-K12-11 in B cells and endothelial cells (2014)
    BioMed Central
    Details
    Publication Date: 2014-08-09
    Description: Background: Kaposi's sarcoma associated herpes virus (KSHV) is associated with tumors of endothelial and lymphoid origin. During latent infection, KSHV expresses miR-K12-11, an ortholog of the human tumor gene hsa-miR-155. Both gene products are microRNAs (miRNAs), which are important post-transcriptional regulators that contribute to tissue specific gene expression. Advances in target identification technologies and molecular interaction databases have allowed a systems biology approach to unravel the gene regulatory networks (GRNs) triggered by miR-K12-11 in endothelial and lymphoid cells. Understanding the tissue specific function of miR-K12-11 will help to elucidate underlying mechanisms of KSHV pathogenesis. Results: Ectopic expression of miR-K12-11 differentially affected gene expression in BJAB cells of lymphoid origin and TIVE cells of endothelial origin. Direct miRNA targeting accounted for a small fraction of the observed transcriptome changes: only 29 genes were identified as putative direct targets of miR-K12-11 in both cell types. However, a number of commonly affected biological pathways, such as carbohydrate metabolism and interferon response related signaling, were revealed by gene ontology analysis. Integration of transcriptome profiling, bioinformatic algorithms, and databases of protein-protein interactome from the ENCODE project identified different nodes of GRNs utilized by miR-K12-11 in a tissue-specific fashion. These effector genes, including cancer associated transcription factors and signaling proteins, amplified the regulatory potential of a single miRNA, from a small set of putative direct targets to a larger set of genes. Conclusions: This is the first comparative analysis of miRNA-K12-11's effects in endothelial and B cells, from tissues infected with KSHV in vivo. MiR-K12-11 was able to broadly modulate gene expression in both cell types. Using a systems biology approach, we inferred that miR-K12-11 establishes its GRN by both repressing master TFs and influencing signaling pathways, to counter the host anti-viral response and to promote proliferation and survival of infected cells. The targeted GRNs are more reproducible and informative than target gene identification, and our approach can be applied to other regulatory factors of interest.
    Electronic ISSN: 1471-2164
    Topics: Biology
    Published by BioMed Central
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
    PAPER CURRENT
  • 7
    facet.materialart.
    Unknown
    Annual cycles of ecological disturbance and recovery underlying the subarctic Atlantic spring plankton bloom (2013)
    Wiley
    Details
    Publication Date: 2013-05-22
    Description: [1]  Satellite measurements allow global assessments of phytoplankton concentrations and, from observed temporal changes in biomass, direct access to net biomass accumulation rates ( r ). For the subarctic Atlantic basin, analysis of annual cycles in r reveal that initiation of the annual blooming-phase does not occur in spring after stratification surpasses a critical threshold, but rather in early winter when growth conditions for phytoplankton are deteriorating. This finding has been confirmed with in situ profiling float data. The objective of the current study was to test whether satellite-based annual cycles in r are reproduced by the Biogeochemical Element Cycling - Community Climate System Model and, if so, to use the additional ecosystem properties resolved by the model to better understand factors controlling phytoplankton blooms. We find that the model gives a similar early onset time for the blooming phase, that this initiation is largely due to the physical disruption of phytoplankton-grazer interactions during mixed layer deepening, and that parallel increases in phytoplankton specific division and loss rates during spring maintain the subtle disruption in food web equilibrium that ultimately yields the spring bloom climax. The link between winter mixing and bloom dynamics is illustrated by contrasting annual plankton cycles between regions with deeper and shallower mixing. We show that maximum water column inventories of phytoplankton vary in proportion to maximum winter mixing depth, implying that future reductions in winter mixing may dampen plankton cycles in the subarctic Atlantic. We propose that ecosystem disturbance-recovery sequences are a unifying property of global ocean plankton blooms.
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
    PAPER CURRENT
  • 8
    facet.materialart.
    Unknown
    Characterisation of a transcriptome to find sequence differences between two differentially migrating subspecies of the willow warbler Phylloscopus trochilus (2013)
    BioMed Central
    Details
    Publication Date: 2013-05-15
    Description: Background: Animal migration requires adaptations in morphological, physiological and behavioural traits. Several of these traits have been shown to possess a strong heritable component in birds, but little is known about their genetic architecture. Here we used 454 sequencing of brain-derived transcriptomes from two differentially migrating subspecies of the willow warbler Phylloscopus trochilus to detect genes potentially underlying traits associated with migration. Results: The transcriptome sequencing resulted in 1.8 million reads following filtering steps. Most of the reads (84%) were successfully mapped to the genome of the zebra finch Taeniopygia gutatta. The mapped reads were situated within at least 12,101 predicted zebra finch genes, with the greatest sequencing depth in exons. Reads that were mapped to intergenic regions were generally located close to predicted genes and possibly located in uncharacterized untranslated regions (UTRs). Out of 85,000 single nucleotide polymorphisms (SNPs) with a minimum sequencing depth of eight reads from each of two subspecies-specific pools, only 55 showed high differentiation, confirming previous studies showing that most of the genetic variation is shared between the subspecies. Validation of a subset of the most highly differentiated SNPs using Sanger sequencing demonstrated that several of them also were differentiated between an independent set of individuals of each subspecies. These SNPs were clustered in two chromosome regions that are likely to be influenced by divergent selection between the subspecies and that could potentially be associated with adaptations to their different migratory strategies. Conclusions: Our study represents the first large-scale sequencing analysis aiming at detecting genes underlying migratory phenotypes in birds and provides new candidates for genes potentially involved in migration.
    Electronic ISSN: 1471-2164
    Topics: Biology
    Published by BioMed Central
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
    PAPER CURRENT
  • 9
    facet.materialart.
    Unknown
    Interactions between ethylene and auxin are crucial to the control of grape (Vitis vinifera L.) berry ripening (2013)
    BioMed Central
    Details
    Publication Date: 2013-12-24
    Description: Background: Fruit development is controlled by plant hormones, but the role of hormone interactions during fruit ripening is poorly understood. Interactions between ethylene and the auxin indole-3-acetic acid (IAA) are likely to be crucial during the ripening process, since both hormones have been shown to be implicated in the control of ripening in a range of different fruit species. Results: Grapevine (Vitis vinifera L.) homologues of the TRYPTOPHAN AMINOTRANSFERASE RELATED (TAR) and YUCCA families, functioning in the only characterized pathway of auxin biosynthesis, were identified and the expression of several TAR genes was shown to be induced by the pre-ripening application of the ethylene-releasing compound Ethrel. The induction of TAR expression was accompanied by increased IAA and IAA-Asp concentrations, indicative of an upregulation of auxin biosynthesis and conjugation. Exposure of ex planta, pre-ripening berries to the ethylene biosynthesis inhibitor aminoethoxyvinylglycine resulted in decreased IAA and IAA-Asp concentrations. The delayed initiation of ripening observed in Ethrel-treated berries might therefore represent an indirect ethylene effect mediated by increased auxin concentrations. During berry development, the expression of three TAR genes and one YUCCA gene was upregulated at the time of ripening initiation and/or during ripening. This increase in auxin biosynthesis gene expression was preceded by high expression levels of the ethylene biosynthesis genes 1-aminocyclopropane-1-carboxylate synthase and 1-aminocyclopropane-1-carboxylate oxidase. Conclusions: In grape berries, members of both gene families involved in the two-step pathway of auxin biosynthesis are expressed, suggesting that IAA is produced through the combined action of TAR and YUCCA proteins in developing berries. The induction of TAR expression by Ethrel applications and the developmental expression patterns of auxin and ethylene biosynthesis genes indicate that elevated concentrations of ethylene prior to the initiation of ripening might lead to an increased production of IAA, suggesting a complex involvement of this auxin and its conjugates in grape berry ripening.
    Electronic ISSN: 1471-2229
    Topics: Biology
    Published by BioMed Central
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
    PAPER CURRENT
  • 10
    facet.materialart.
    Unknown
    Characterisation of a transcriptome to find sequence differences between two differentially migrating subspecies of the willow warbler Phylloscopus trochilus (2013)
    BioMed Central
    Details
    Publication Date: 2013-01-01
    Electronic ISSN: 1471-2164
    Topics: Biology
    Published by BioMed Central
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
    PAPER CURRENT
Close ⊗
This website uses cookies and the analysis tool Matomo. More information can be found here...