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  • American Institute of Physics (AIP)  (8)
  • 2010-2014  (8)
  • 1935-1939
  • 1
    Publication Date: 2014-11-06
    Description: The quantum-classical correspondence is studied for a periodically driven quartic oscillator exhibiting integrable and chaotic dynamics, by studying the Bohmian trajectory of the corresponding “classical” Schrödinger equation. Phase plots and the Kolmogorov-Sinai entropy are computed and compared with the classical trajectory as well as the Bohmian trajectory obtained from the time dependent Schrödinger equation. Bohmian mechanics at the classical limit appears to mimick the behavior of a dissipative dynamical system.
    Print ISSN: 1054-1500
    Electronic ISSN: 1089-7682
    Topics: Physics
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  • 2
    Publication Date: 2014-09-23
    Description: Anomalous behaviour in density, diffusivity, and structural order is investigated for silicon modeled by the Stillinger-Weber potential by performing molecular dynamics simulations. As previously reported in the case of water [J. R. Errington and P. G. Debenedetti, Nature (London)409, 318 (2001)] and silica [M. S. Shell, P. G. Debenedetti, and A. Z. Panagiotopoulos, Phys. Rev. E66, 011202 (2002)], a cascading of thermodynamic, dynamic, and structural anomalous regions is also observed in liquid silicon. The region of structural anomaly includes the region of diffusivity anomaly, which in turn encompasses the region of density anomaly (which is unlike water but similar to silica). In the region of structural anomaly, a tight correlation between the translational and tetrahedrality order parameter is found, but the correlation is weaker when a local orientational order parameter (q 3 ) is used as a measure of tetrahedrality. The total excess entropy and the pair correlation entropy are computed across the phase diagram and the correlation between the excess entropy and the regions of anomalies in the phase diagram of liquid silicon is examined. Scaling relations associating the excess entropy with the diffusion coefficient show considerable deviation from the quasi-universal behaviour observed in hard-sphere and Lennard-Jones liquids and some liquid metals. Excess entropy based criteria for diffusivity and structural anomalies fail to capture the observed regions of anomaly.
    Print ISSN: 0021-9606
    Electronic ISSN: 1089-7690
    Topics: Chemistry and Pharmacology , Physics
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  • 3
    Publication Date: 2014-08-29
    Description: We report a systematic investigation of two plume interactions at different spatial separation (3-7 mm) in laser-blow-off. The plasmas plumes are created using Laser-blow-off (LBO) scheme of a thin film. The fast imaging technique is used to record the evolution of seed plasmas and the interaction zone which is formed as a result of interaction of the two seed plasmas. Time resolved optical emission spectroscopy is used to study evolution of optical emissions of the species present in the different regions of the plasmas. Neutral Li emissions (Li I 670.8 nm (2s 2 S 1/2 ← 2p 2 P 3/2, 1/2 ) and Li I 610.3 nm (2p 2 P 3/2, 1/2 ← 3d 2 D 3/2, 5/2 )) are dominant in the plasmas but significant differences are observed in the emission and estimated plasma parameters of the seed and the interaction zone. The transport of plasma species from the seed plasmas to the interaction zone is discussed in the terms of plume divergence, kinetic energy of particles, and ion acoustic speed. An attempt is made to understand the formation and dynamics of the interaction zone in the colliding LBO seed plasmas.
    Print ISSN: 1070-664X
    Electronic ISSN: 1089-7674
    Topics: Physics
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  • 4
    Publication Date: 2014-11-26
    Description: The mechanism of cold denaturation in proteins is often incompletely understood due to limitations in accessing the denatured states at extremely low temperatures. Using atomistic molecular dynamics simulations, we have compared early (nanosecond timescale) structural and solvation properties of yeast frataxin (Yfh1) at its temperature of maximum stability, 292 K ( T s ), and the experimentally observed temperature of complete unfolding, 268 K ( T c ). Within the simulated timescales, discernible “global” level structural loss at T c is correlated with a distinct increase in surface hydration. However, the hydration and the unfolding events do not occur uniformly over the entire protein surface, but are sensitive to local structural propensity and hydrophobicity. Calculated infrared absorption spectra in the amide-I region of the whole protein show a distinct red shift at T c in comparison to T s . Domain specific calculations of IR spectra indicate that the red shift primarily arises from the beta strands. This is commensurate with a marked increase in solvent accessible surface area per residue for the beta-sheets at T c . Detailed analyses of structure and dynamics of hydration water around the hydrophobic residues of the beta-sheets show a more bulk water like behavior at T c due to preferential disruption of the hydrophobic effects around these domains. Our results indicate that in this protein, the surface exposed beta-sheet domains are more susceptible to cold denaturing conditions, in qualitative agreement with solution NMR experimental results.
    Electronic ISSN: 1931-9223
    Topics: Chemistry and Pharmacology , Physics
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  • 5
    Publication Date: 2014-11-26
    Description: The mechanism of cold denaturation in proteins is often incompletely understood due to limitations in accessing the denatured states at extremely low temperatures. Using atomistic molecular dynamics simulations, we have compared early (nanosecond timescale) structural and solvation properties of yeast frataxin (Yfh1) at its temperature of maximum stability, 292 K ( T s ), and the experimentally observed temperature of complete unfolding, 268 K ( T c ). Within the simulated timescales, discernible “global” level structural loss at T c is correlated with a distinct increase in surface hydration. However, the hydration and the unfolding events do not occur uniformly over the entire protein surface, but are sensitive to local structural propensity and hydrophobicity. Calculated infrared absorption spectra in the amide-I region of the whole protein show a distinct red shift at T c in comparison to T s . Domain specific calculations of IR spectra indicate that the red shift primarily arises from the beta strands. This is commensurate with a marked increase in solvent accessible surface area per residue for the beta-sheets at T c . Detailed analyses of structure and dynamics of hydration water around the hydrophobic residues of the beta-sheets show a more bulk water like behavior at T c due to preferential disruption of the hydrophobic effects around these domains. Our results indicate that in this protein, the surface exposed beta-sheet domains are more susceptible to cold denaturing conditions, in qualitative agreement with solution NMR experimental results.
    Print ISSN: 0021-9606
    Electronic ISSN: 1089-7690
    Topics: Chemistry and Pharmacology , Physics
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  • 6
    Publication Date: 2014-12-18
    Description: In the present work, polydisperse zinc oxide composed of nano and submicron size particles is used to prepare photo-anode for dye sensitized solar cell. The particles are synthesized through auto-combustion route and characterized in terms of their phase formation behavior as well as morphological properties. UV-vis diffused reflectance spectra of the prepared photo-anode show its promising dye uptake and incident light scattering behavior. The prepared cells reveal ∼3.2% solar to electric conversion efficiency. The fairly acceptable efficiencies of the cells are attributed due to the efficient scattering of incident light and reasonable dye uptake within polydisperse particulate photo-anode.
    Electronic ISSN: 1941-7012
    Topics: Energy, Environment Protection, Nuclear Power Engineering
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  • 7
    Publication Date: 2014-11-11
    Description: Phase mixing of a longitudinal Akhiezer-Polovin wave subjected to a small amplitude longitudinal perturbation and its eventual breaking is studied analytically. It is well known that longitudinal Akhiezer-Polovin wave subjected to arbitrarily small longitudinal perturbation breaks via the process of phase mixing at an amplitude well below its limiting amplitude [Verma et al ., Phys. Rev. Lett. 108 , 125005 (2012)]. We analytically show that the phase mixing time (breaking time, ω p τ mix ) scales with β (phase velocity) and u m (maximum fluid velocity) as ω p τ m i x ∼ 2 π β 3 δ [ 1 / u m 2 − 1 / 4 ] , where δ is the amplitude of velocity perturbation and ω p is the non-relativistic plasma frequency. This analytical dependence of phase mixing time on β , u m , and δ is further verified using numerical simulations based on Dawson sheet model.
    Print ISSN: 1070-664X
    Electronic ISSN: 1089-7674
    Topics: Physics
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  • 8
    Publication Date: 2014-06-14
    Description: It is widely believed that the breakdown of the Stokes-Einstein (SE) relation between the translational diffusivity and the shear viscosity in supercooled liquids is due to the development of dynamic heterogeneity, i.e., the presence of both slow and fast moving particles in the system. In this study we directly calculate the distribution of the diffusivity for a model system for different temperatures in the supercooled regime. We find that with decreasing temperature, the distribution evolves from Gaussian to bimodal indicating that on the time scale of the typical relaxation time, mobile (fluid like) and less mobile (solid like) particles in the system can be unambiguously identified. We also show that less mobile particles obey the Stokes-Einstein relation even in the supercooled regime and it is the mobile particles which show strong violation of the Stokes-Einstein relation in agreement with the previous studies on different model glass forming systems. Motivated by some of the recent studies where an ideal glass transition is proposed by randomly pinning some fraction of particles, we then studied the SE breakdown as a function of random pinning concentration in our model system. We showed that degree of SE breakdown increases quite dramatically with increasing pinning concentration, thereby providing a new way to unravel the puzzles of SE violation in supercooled liquids in greater details.
    Print ISSN: 0021-9606
    Electronic ISSN: 1089-7690
    Topics: Chemistry and Pharmacology , Physics
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