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  • 1
    Publication Date: 2002-03-23
    Description: Well-preserved subfossil bones of Adelie penguins, Pygoscelis adeliae, underlie existing and abandoned nesting colonies in Antarctica. These bones, dating back to more than 7000 years before the present, harbor some of the best-preserved ancient DNA yet discovered. From 96 radiocarbon-aged bones, we report large numbers of mitochondrial haplotypes, some of which appear to be extinct, given the 380 living birds sampled. We demonstrate DNA sequence evolution through time and estimate the rate of evolution of the hypervariable region I using a Markov chain Monte Carlo integration and a least-squares regression analysis. Our calculated rates of evolution are approximately two to seven times higher than previous indirect phylogenetic estimates.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lambert, D M -- Ritchie, P A -- Millar, C D -- Holland, B -- Drummond, A J -- Baroni, C -- New York, N.Y. -- Science. 2002 Mar 22;295(5563):2270-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Molecular BioSciences, Massey University, Private Bag 11-222, Palmerston North, New Zealand. D.M.Lambert@massey.ac.nz〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11910113" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antarctic Regions ; Birds/*genetics ; Bone and Bones/metabolism ; Calibration ; Carbon Radioisotopes ; DNA, Mitochondrial/*genetics/isolation & purification ; Ecosystem ; *Evolution, Molecular ; Fossils ; Haplotypes/genetics ; Least-Squares Analysis ; Markov Chains ; Monte Carlo Method ; Phylogeny ; Polymerase Chain Reaction ; Time Factors
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2012-08-28
    Description: There are two competing hypotheses for the origin of the Indo-European language family. The conventional view places the homeland in the Pontic steppes about 6000 years ago. An alternative hypothesis claims that the languages spread from Anatolia with the expansion of farming 8000 to 9500 years ago. We used Bayesian phylogeographic approaches, together with basic vocabulary data from 103 ancient and contemporary Indo-European languages, to explicitly model the expansion of the family and test these hypotheses. We found decisive support for an Anatolian origin over a steppe origin. Both the inferred timing and root location of the Indo-European language trees fit with an agricultural expansion from Anatolia beginning 8000 to 9500 years ago. These results highlight the critical role that phylogeographic inference can play in resolving debates about human prehistory.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4112997/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4112997/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bouckaert, Remco -- Lemey, Philippe -- Dunn, Michael -- Greenhill, Simon J -- Alekseyenko, Alexander V -- Drummond, Alexei J -- Gray, Russell D -- Suchard, Marc A -- Atkinson, Quentin D -- 260864/European Research Council/International -- R01 GM086887/GM/NIGMS NIH HHS/ -- R01 HG006139/HG/NHGRI NIH HHS/ -- New York, N.Y. -- Science. 2012 Aug 24;337(6097):957-60. doi: 10.1126/science.1219669.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Computer Science, University of Auckland, Auckland 1142, New Zealand.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22923579" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/history ; Bayes Theorem ; *Cultural Evolution ; History, Ancient ; Humans ; Language/*history ; Linguistics/history ; Phylogeography ; Turkey ; Vocabulary
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2004-11-30
    Description: The widespread extinctions of large mammals at the end of the Pleistocene epoch have often been attributed to the depredations of humans; here we present genetic evidence that questions this assumption. We used ancient DNA and Bayesian techniques to reconstruct a detailed genetic history of bison throughout the late Pleistocene and Holocene epochs. Our analyses depict a large diverse population living throughout Beringia until around 37,000 years before the present, when the population's genetic diversity began to decline dramatically. The timing of this decline correlates with environmental changes associated with the onset of the last glacial cycle, whereas archaeological evidence does not support the presence of large populations of humans in Eastern Beringia until more than 15,000 years later.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shapiro, Beth -- Drummond, Alexei J -- Rambaut, Andrew -- Wilson, Michael C -- Matheus, Paul E -- Sher, Andrei V -- Pybus, Oliver G -- Gilbert, M Thomas P -- Barnes, Ian -- Binladen, Jonas -- Willerslev, Eske -- Hansen, Anders J -- Baryshnikov, Gennady F -- Burns, James A -- Davydov, Sergei -- Driver, Jonathan C -- Froese, Duane G -- Harington, C Richard -- Keddie, Grant -- Kosintsev, Pavel -- Kunz, Michael L -- Martin, Larry D -- Stephenson, Robert O -- Storer, John -- Tedford, Richard -- Zimov, Sergei -- Cooper, Alan -- New York, N.Y. -- Science. 2004 Nov 26;306(5701):1561-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Henry Wellcome Ancient Biomolecules Centre, Oxford University, South Parks Road, Oxford OX13PS, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/15567864" target="_blank"〉PubMed〈/a〉
    Keywords: Alaska ; Animals ; Bayes Theorem ; *Bison/classification/genetics ; Canada ; China ; *Climate ; DNA, Mitochondrial/genetics ; Environment ; *Fossils ; Genetic Variation ; Genetics, Population ; Human Activities ; Humans ; North America ; Phylogeny ; Population Dynamics ; Sequence Analysis, DNA ; Time
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2005-09-10
    Description: On 4 July 2005, many observatories around the world and in space observed the collision of Deep Impact with comet 9P/Tempel 1 or its aftermath. This was an unprecedented coordinated observational campaign. These data show that (i) there was new material after impact that was compositionally different from that seen before impact; (ii) the ratio of dust mass to gas mass in the ejecta was much larger than before impact; (iii) the new activity did not last more than a few days, and by 9 July the comet's behavior was indistinguishable from its pre-impact behavior; and (iv) there were interesting transient phenomena that may be correlated with cratering physics.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Meech, K J -- Ageorges, N -- A'Hearn, M F -- Arpigny, C -- Ates, A -- Aycock, J -- Bagnulo, S -- Bailey, J -- Barber, R -- Barrera, L -- Barrena, R -- Bauer, J M -- Belton, M J S -- Bensch, F -- Bhattacharya, B -- Biver, N -- Blake, G -- Bockelee-Morvan, D -- Boehnhardt, H -- Bonev, B P -- Bonev, T -- Buie, M W -- Burton, M G -- Butner, H M -- Cabanac, R -- Campbell, R -- Campins, H -- Capria, M T -- Carroll, T -- Chaffee, F -- Charnley, S B -- Cleis, R -- Coates, A -- Cochran, A -- Colom, P -- Conrad, A -- Coulson, I M -- Crovisier, J -- deBuizer, J -- Dekany, R -- de Leon, J -- Dello Russo, N -- Delsanti, A -- DiSanti, M -- Drummond, J -- Dundon, L -- Etzel, P B -- Farnham, T L -- Feldman, P -- Fernandez, Y R -- Filipovic, M D -- Fisher, S -- Fitzsimmons, A -- Fong, D -- Fugate, R -- Fujiwara, H -- Fujiyoshi, T -- Furusho, R -- Fuse, T -- Gibb, E -- Groussin, O -- Gulkis, S -- Gurwell, M -- Hadamcik, E -- Hainaut, O -- Harker, D -- Harrington, D -- Harwit, M -- Hasegawa, S -- Hergenrother, C W -- Hirst, P -- Hodapp, K -- Honda, M -- Howell, E S -- Hutsemekers, D -- Iono, D -- Ip, W-H -- Jackson, W -- Jehin, E -- Jiang, Z J -- Jones, G H -- Jones, P A -- Kadono, T -- Kamath, U W -- Kaufl, H U -- Kasuga, T -- Kawakita, H -- Kelley, M S -- Kerber, F -- Kidger, M -- Kinoshita, D -- Knight, M -- Lara, L -- Larson, S M -- Lederer, S -- Lee, C-F -- Levasseur-Regourd, A C -- Li, J Y -- Li, Q-S -- Licandro, J -- Lin, Z-Y -- Lisse, C M -- LoCurto, G -- Lovell, A J -- Lowry, S C -- Lyke, J -- Lynch, D -- Ma, J -- Magee-Sauer, K -- Maheswar, G -- Manfroid, J -- Marco, O -- Martin, P -- Melnick, G -- Miller, S -- Miyata, T -- Moriarty-Schieven, G H -- Moskovitz, N -- Mueller, B E A -- Mumma, M J -- Muneer, S -- Neufeld, D A -- Ootsubo, T -- Osip, D -- Pandea, S K -- Pantin, E -- Paterno-Mahler, R -- Patten, B -- Penprase, B E -- Peck, A -- Petitas, G -- Pinilla-Alonso, N -- Pittichova, J -- Pompei, E -- Prabhu, T P -- Qi, C -- Rao, R -- Rauer, H -- Reitsema, H -- Rodgers, S D -- Rodriguez, P -- Ruane, R -- Ruch, G -- Rujopakarn, W -- Sahu, D K -- Sako, S -- Sakon, I -- Samarasinha, N -- Sarkissian, J M -- Saviane, I -- Schirmer, M -- Schultz, P -- Schulz, R -- Seitzer, P -- Sekiguchi, T -- Selman, F -- Serra-Ricart, M -- Sharp, R -- Snell, R L -- Snodgrass, C -- Stallard, T -- Stecklein, G -- Sterken, C -- Stuwe, J A -- Sugita, S -- Sumner, M -- Suntzeff, N -- Swaters, R -- Takakuwa, S -- Takato, N -- Thomas-Osip, J -- Thompson, E -- Tokunaga, A T -- Tozzi, G P -- Tran, H -- Troy, M -- Trujillo, C -- Van Cleve, J -- Vasundhara, R -- Vazquez, R -- Vilas, F -- Villanueva, G -- von Braun, K -- Vora, P -- Wainscoat, R J -- Walsh, K -- Watanabe, J -- Weaver, H A -- Weaver, W -- Weiler, M -- Weissman, P R -- Welsh, W F -- Wilner, D -- Wolk, S -- Womack, M -- Wooden, D -- Woodney, L M -- Woodward, C -- Wu, Z-Y -- Wu, J-H -- Yamashita, T -- Yang, B -- Yang, Y-B -- Yokogawa, S -- Zook, A C -- Zauderer, A -- Zhao, X -- Zhou, X -- Zucconi, J-M -- New York, N.Y. -- Science. 2005 Oct 14;310(5746):265-9. Epub 2005 Sep 8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Astronomy, University of Hawaii at Manoa, 2680 Woodlawn Drive, Honolulu, HI 96822, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16150977" target="_blank"〉PubMed〈/a〉
    Keywords: Cosmic Dust ; Jupiter ; *Meteoroids ; Organic Chemicals ; Photometry
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2006-01-28
    Description: Directly transmitted parasites often provide substantial information about the temporal and spatial characteristics of host-to-host contact. Here, we demonstrate that a fast-evolving virus (feline immunodeficiency virus, FIV) can reveal details of the contemporary population structure and recent demographic history of its natural wildlife host (Puma concolor) that were not apparent from host genetic data and would be impossible to obtain by other means. We suggest that rapidly evolving pathogens may provide a complementary tool for studying population dynamics of their hosts in "shallow" time.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Biek, Roman -- Drummond, Alexei J -- Poss, Mary -- New York, N.Y. -- Science. 2006 Jan 27;311(5760):538-41.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Wildlife Biology Program, University of Montana, Missoula, MT 59812, USA. rbiek@emory.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16439664" target="_blank"〉PubMed〈/a〉
    Keywords: Alberta/epidemiology ; Animals ; Bayes Theorem ; British Columbia/epidemiology ; Ecosystem ; *Evolution, Molecular ; Genes, env ; Genes, pol ; Geography ; Immunodeficiency Virus, Feline/*classification/*genetics ; Lentivirus Infections/epidemiology/*veterinary/virology ; Microsatellite Repeats ; Molecular Sequence Data ; Montana/epidemiology ; Phylogeny ; Population Dynamics ; *Puma/genetics/virology ; Time Factors ; Wyoming/epidemiology
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 6
    Publication Date: 2009-01-24
    Description: Debates about human prehistory often center on the role that population expansions play in shaping biological and cultural diversity. Hypotheses on the origin of the Austronesian settlers of the Pacific are divided between a recent "pulse-pause" expansion from Taiwan and an older "slow-boat" diffusion from Wallacea. We used lexical data and Bayesian phylogenetic methods to construct a phylogeny of 400 languages. In agreement with the pulse-pause scenario, the language trees place the Austronesian origin in Taiwan approximately 5230 years ago and reveal a series of settlement pauses and expansion pulses linked to technological and social innovations. These results are robust to assumptions about the rooting and calibration of the trees and demonstrate the combined power of linguistic scholarship, database technologies, and computational phylogenetic methods for resolving questions about human prehistory.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gray, R D -- Drummond, A J -- Greenhill, S J -- New York, N.Y. -- Science. 2009 Jan 23;323(5913):479-83. doi: 10.1126/science.1166858.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Psychology, University of Auckland, Private Bag 92019, Auckland 1142, New Zealand.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19164742" target="_blank"〉PubMed〈/a〉
    Keywords: Bayes Theorem ; Databases, Factual ; *Emigration and Immigration/history ; History, Ancient ; Humans ; *Language ; Linguistics ; *Oceanic Ancestry Group/history ; Pacific Islands ; Philippines ; Phylogeny ; Polynesia ; Population Dynamics ; Taiwan ; Vocabulary
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2014-07-06
    Description: Using gravitational microlensing, we detected a cold terrestrial planet orbiting one member of a binary star system. The planet has low mass (twice Earth's) and lies projected at ~0.8 astronomical units (AU) from its host star, about the distance between Earth and the Sun. However, the planet's temperature is much lower, 〈60 Kelvin, because the host star is only 0.10 to 0.15 solar masses and therefore more than 400 times less luminous than the Sun. The host itself orbits a slightly more massive companion with projected separation of 10 to 15 AU. This detection is consistent with such systems being very common. Straightforward modification of current microlensing search strategies could increase sensitivity to planets in binary systems. With more detections, such binary-star planetary systems could constrain models of planet formation and evolution.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gould, A -- Udalski, A -- Shin, I-G -- Porritt, I -- Skowron, J -- Han, C -- Yee, J C -- Kozlowski, S -- Choi, J-Y -- Poleski, R -- Wyrzykowski, L -- Ulaczyk, K -- Pietrukowicz, P -- Mroz, P -- Szymanski, M K -- Kubiak, M -- Soszynski, I -- Pietrzynski, G -- Gaudi, B S -- Christie, G W -- Drummond, J -- McCormick, J -- Natusch, T -- Ngan, H -- Tan, T-G -- Albrow, M -- DePoy, D L -- Hwang, K-H -- Jung, Y K -- Lee, C-U -- Park, H -- Pogge, R W -- Abe, F -- Bennett, D P -- Bond, I A -- Botzler, C S -- Freeman, M -- Fukui, A -- Fukunaga, D -- Itow, Y -- Koshimoto, N -- Larsen, P -- Ling, C H -- Masuda, K -- Matsubara, Y -- Muraki, Y -- Namba, S -- Ohnishi, K -- Philpott, L -- Rattenbury, N J -- Saito, To -- Sullivan, D J -- Sumi, T -- Suzuki, D -- Tristram, P J -- Tsurumi, N -- Wada, K -- Yamai, N -- Yock, P C M -- Yonehara, A -- Shvartzvald, Y -- Maoz, D -- Kaspi, S -- Friedmann, M -- New York, N.Y. -- Science. 2014 Jul 4;345(6192):46-9. doi: 10.1126/science.1251527.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Astronomy, Ohio State University, 140 West 18th Avenue, Columbus, OH 43210, USA. ; Warsaw University Observatory, Aleje Ujazdowskie 4, 00-478 Warszawa, Poland. ; Turitea Observatory, Palmerston North, New Zealand. ; Department of Physics, Chungbuk National University, Cheongju 371-763, Republic of Korea. cheongho@astroph.chungbuk.ac.kr. ; Department of Astronomy, Ohio State University, 140 West 18th Avenue, Columbus, OH 43210, USA. Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138, USA. ; Department of Astronomy, Ohio State University, 140 West 18th Avenue, Columbus, OH 43210, USA. Warsaw University Observatory, Aleje Ujazdowskie 4, 00-478 Warszawa, Poland. ; Warsaw University Observatory, Aleje Ujazdowskie 4, 00-478 Warszawa, Poland. Institute of Astronomy, University of Cambridge, Madingley Road, Cambridge CB3 0HA, UK. ; Department of Astronomy, Ohio State University, 140 West 18th Avenue, Columbus, OH 43210, USA. Universidad de Concepcion, Departamento de Astronomia, Casilla 160-C, Concepcion, Chile. ; Auckland Observatory, Auckland, New Zealand. ; Possum Observatory, Patutahi, New Zealand. ; Farm Cove Observatory, Centre for Backyard Astrophysics, Pakuranga, Auckland, New Zealand. ; Possum Observatory, Patutahi, New Zealand. Auckland University of Technology, Auckland, New Zealand. ; Perth Exoplanet Survey Telescope, Perth, Australia. ; Department of Physics and Astronomy, University of Canterbury, Private Bag 4800, Christchurch, New Zealand. ; Department of Physics and Astronomy, Texas A&M University, College Station, TX 77843-4242, USA. ; Department of Physics, Chungbuk National University, Cheongju 371-763, Republic of Korea. ; Korea Astronomy and Space Science Institute, Daejeon 305-348, Republic of Korea. ; Solar-Terrestrial Environment Laboratory, Nagoya University, Nagoya 464-8601, Japan. ; University of Notre Dame, Department of Physics, 225 Nieuwland Science Hall, Notre Dame, IN 46556-5670, USA. ; Institute of Information and Mathematical Sciences, Massey University, Private Bag 102-904, North Shore Mail Centre, Auckland, New Zealand. ; Department of Physics, University of Auckland, Private Bag 92-019, Auckland 1001, New Zealand. ; Okayama Astrophysical Observatory, National Astronomical Observatory of Japan, Asakuchi, Okayama 719-0232, Japan. ; Department of Earth and Space Science, Osaka University, Osaka 560-0043, Japan. ; Department of Physics, University of Auckland, Private Bag 92-019, Auckland 1001, New Zealand. Institute of Astronomy, University of Cambridge, Madingley Road, Cambridge CB3 0HA, UK. ; Nagano National College of Technology, Nagano 381-8550, Japan. ; Department of Earth, Ocean and Atmospheric Sciences, The University of British Columbia, Vancouver, BC V6T 1Z4, Canada. ; Tokyo Metropolitan College of Aeronautics, Tokyo 116-8523, Japan. ; School of Chemical and Physical Sciences, Victoria University, Wellington, New Zealand. ; Mount John University Observatory, Post Office Box 56, Lake Tekapo 8770, New Zealand. ; Department of Physics, Faculty of Science, Kyoto Sangyo University, Kyoto 603-8555, Japan. ; School of Physics and Astronomy, Tel-Aviv University, Tel-Aviv 69978, Israel.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24994642" target="_blank"〉PubMed〈/a〉
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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