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  • 2000-2004  (701)
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  • 1
    Publication Date: 2004-11-16
    Description: Leukemic cells from patients with Philadelphia chromosome-positive chronic myelogenous leukemia (CML) are very resistant to apoptosis induced by DNA-damaging agents and other chemotherapeutic drugs, due to the presence of Bcr-Abl, a chimeric cytoplasmic tyrosine-kinase that confers both malignancy and resistance to apoptosis. Efficient treatment of CML can be achieved with a normal bone marrow transplant, which induces a graft-versus-leukemia response, and more recently by the use of the specific inhibitor imatinib mesylate (glivec. Novartis). Glivec blocks Bcr-Abl kinase activity and, as a consequence, the malignant cell dies by apoptosis. However most glivec-treated patients, mainly in the acute and blast phases, develop resistant forms of the disease. Since resistance to apoptosis in Bcr-Abl+ cells is probably related to the inhibition of mitochondrial release of cytochrome c, an obligatory step in most apoptotic pathways, we sought to investigate expression of Bcl-2 family genes in Bcr-Abl+, glivec-treated cells. By semi-quantitative RT-PCR we analyzed the gene expression of several pro- and anti-apoptotic molecules in the transduced cell line HL-60.Bcr-Abl and the wild-type HL-60, after a 1, 4 and 8h treatment with 10μM glivec. Bcr-Abl′s kinase activity is promptly inhibited by glivec (within 5 to 15min) and HL-60.Bcr-Abl cells begin to show mitochondrial depolarization 24h after treatment with the drug, dying 48h later, whereas no effects are observed in HL-60. Soon after glivec addition some genes are transcriptionally regulated in HL-60.Bcr-Abl cells. The major differences were observed for bcl-xL (2-fold reduction), c-flip (2-fold increase), bcl-w (30% increase) and mcl-1 (20% reduction). Some pro-apoptotic molecules such as noxa also displayed differential regulation in HL-60.Bcr-Abl cells. No differences were observed in HL-60 cells. In conclusion we describe a complex transcriptional regulation mechanism dependent on Bcr-Abl tyrosine-kinase activity, which has not been previously described by the use of microarrays, and could contribute to the understanding of the mechanisms involved in protection of apoptosis and drug resistance of Bcr-Abl+ cells.
    Print ISSN: 0006-4971
    Electronic ISSN: 1528-0020
    Topics: Biology , Medicine
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  • 2
  • 3
    ISSN: 1432-1017
    Keywords: Malnutrition Myelin X-ray scattering Sciatic nerves Optic nerves
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Physics
    Notes: Abstract. Taking advantage of the fast and accurate X-ray scattering techniques recently developed in our laboratory, we tackled the study of the structural alterations induced in myelin by malnutrition. Our work was performed on sciatic and optic nerves dissected from rats fed with either a normal or a low-protein caloric diet, as a function of age (from birth to 60 days). By way of electrophysiological controls we also measured (on the sciatic nerves) the height and velocity of the compound action potential. Malnutrition was found to decrease the amount of myelin and to impair the packing order of the membranes in the sheaths.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    s.l. ; Stafa-Zurich, Switzerland
    Journal of metastable and nanocrystalline materials Vol. 20-21 (July 2004), p. 523-528 
    ISSN: 1422-6375
    Source: Scientific.Net: Materials Science & Technology / Trans Tech Publications Archiv 1984-2008
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 117 (2002), S. 2489-2495 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: An improved density matrix functional (DMF) combining the properties of the "corrected Hartree" (CH) and "corrected Hartree–Fock" (CHF) approximations is proposed. Functionals of the CH/CHF type and the closely related natural orbital functional of Goedecker and Umrigar (GU) are tested in fully variational finite basis set calculations of light atoms, the lowest energy singlet methylene, and, for the first time, potential energy curves of diatomic molecules. Although CH/CHF-style DMFs may give reasonable energies for atoms and molecules near equilibrium geometries, they predict unrealistically shallow minima in the potential energy curves for diatomic molecules with more than two electrons. The calculated CH and CHF molecular dissociation curves exhibit the same patterns of over- and under-correlations as the corresponding correlation energy plots for the homogeneous electron gas undergoing a transition from high to low densities. In contrast, the GU functional yields not only accurate atomic and molecular energies but also plausible dissociation curves. The reasons behind the observed performance are analyzed. © 2002 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 116 (2002), S. 6458-6467 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The behavior of the Colle–Salvetti (CS) correlation functional based on the Hartree–Fock (HF) second-order density matrix is investigated in the case of the He atom. The analysis of the correlation hole and energy contributions show that correlation effects are not taken into account appropriately due to the missing kinetic correlation. The CS final simplified energy expression also has some problems. To address these problems, we have constructed a new correlation functional based on the HF second-order density matrix including the effects of not only electron–electron interaction but also the kinetic energy by using an adiabatic connection formula. In addition, correlation effects for opposite and parallel spins are treated independently. This functional reproduces accurate correlation energies for H–Ar atoms. Combining it with the Becke 1988 exchange functional, we get reasonable atomization energies for the G2 set. © 2002 American Institute of Physics.
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  • 7
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 115 (2001), S. 1324-1334 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The indirect nuclear spin–spin coupling constants of C2H4, CH2NH, CH2O, and CH2S were investigated by means of correlated ab initio calculations at the level of the second order polarization propagator approximation (SOPPA) and the second order polarization propagator approximation with coupled cluster singles and doubles amplitudes—SOPPA(CCSD) using large basis sets, which are optimized for the calculation of coupling constants. It is found that at the self-consistent-field (SCF) level CH2NH and CH2S exhibit triplet instabilities whereas CH2CH2 and CH2O show triplet quasi-instabilities, which renders the SCF results meaningless. Our best results deviate between 0.3 and 2.7 Hz from the experimental values. We find that although the one-bond C–H and Y–H couplings as well as the two- and three-bond H–H couplings are dominated by the Fermi contact term, significant contributions of the orbital paramagnetic and sometimes even spin–dipolar terms are observed for the one-bond C–Y and two-bond C–H and Y–H coupling constants. Similarly the changes in the couplings caused by the electronegativity and the lone-pair of Y are mostly due to changes in the Fermi contact (all couplings) and the orbital paramagnetic contribution (C–Y and two-bond Y–H couplings). However, the trend in the changes are neither the same for both terms not for all couplings. In particular, the position of CH2S in the series varies indicating that either the electronegativity or the lone pairs are the dominating perturbation. Furthermore, small but optimized Gaussian basis sets for the calculation of indirect nuclear spin–spin coupling constants are presented. They were obtained by contraction of the s- and p-type basis functions for C, N, O, and S and of the s-type basis functions for H of the large uncontracted basis sets. Molecular orbital coefficients of self-consistent-field calculations on CH4, NH3, H2O, H2S, and H2 with the uncontracted basis sets were used as contraction coefficients. Applied in the calculation of all coupling constants in C2H4, CH2NH, CH2O, and CH2S the contraction leads to a maximum basis set error of ∼0.5 Hz. © 2001 American Institute of Physics.
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  • 8
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 115 (2001), S. 9698-9707 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: We present an atomic-orbital formulation of second-order Møller–Plesset (MP2) theory for periodic systems. Our formulation is shown to have several advantages over the conventional crystalline orbital formulation. Notably, the inherent spatial decay properties of the density matrix and the atomic orbital basis are exploited to reduce computational cost and scaling. The multidimensional k-space integration is replaced by independent Fourier transforms of weighted density matrices. The computational cost of the correlation correction becomes independent of the number of k-points used. Focusing on the MP2 quasiparticle energy band gap, we also show using an isolated fragment model that the long range gap contributions decay rapidly as 1/R5, proof that band gap corrections converge rapidly with respect to lattice summation. The correlated amplitudes in the atomic orbital (AO) basis are obtained in a closed-form fashion, compatible with a semidirect algorithm, thanks to the Laplace transform of the energy denominator. Like for its molecular counterpart, the Laplace quadrature can be accurately carried out by using few quadrature points, 3–7 depending on the application. In particular, MP2 quasiparticle energy band gaps are computed accurately with 3 Laplace quadrature points. All these traits indicate that robust calculations of the correlation correction to the Hartree–Fock (HF) energy and band gap of large systems can be carried out. We present benchmark periodic MP2 calculations on polyacetylene, polyphenylenevinylene, hexagonal boron nitride, and stacked polyacetylene. © 2001 American Institute of Physics.
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  • 9
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 113 (2000), S. 8852-8853 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The 364 nm laser photoelectron spectrum of SnO− is reported. Transitions from both 2Π1/2 and 2Π3/2 spin–orbit states of the anion to the X 1Σ+ state of SnO are observed. The electron affinity of SnO is found to be 0.598±0.006 eV. © 2000 American Institute of Physics.
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  • 10
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 113 (2000), S. 7779-7785 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: We introduce an efficient finite-field approach for calculating static polarizabilities of periodic systems. Our method yields polarizabilities that exactly match the oligomer extrapolation values. Theoretical details are given and benchmark calculations presented. © 2000 American Institute of Physics.
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