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  • Computer Systems  (9)
  • Computer Operations and Hardware  (5)
  • Electronic structure and strongly correlated systems
  • Chemistry
  • 2000-2004  (14)
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  • 1
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    High End Computing Technologies for Earth Science Applications: Trends, Challenges, and Innovations (2003)
    In:  CASI
    Details
    Publication Date: 2018-06-06
    Description: Earth science applications of the future will stress the capabilities of even the highest performance supercomputers in the areas of raw compute power, mass storage management, and software environments. These NASA mission critical problems demand usable multi-petaflops and exabyte-scale systems to fully realize their science goals. With an exciting vision of the technologies needed, NASA has established a comprehensive program of advanced research in computer architecture, software tools, and device technology to ensure that, in partnership with US industry, it can meet these demanding requirements with reliable, cost effective, and usable ultra-scale systems. NASA will exploit, explore, and influence emerging high end computing architectures and technologies to accelerate the next generation of engineering, operations, and discovery processes for NASA Enterprises. This article captures this vision and describes the concepts, accomplishments, and the potential payoff of the key thrusts that will help meet the computational challenges in Earth science applications.
    Keywords: Computer Operations and Hardware
    Format: application/pdf
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  • 2
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    A Hierarchical and Distributed Approach for Mapping Large Applications to Heterogeneous Grids using Genetic Algorithms (2003)
    In:  CASI
    Details
    Publication Date: 2019-07-13
    Description: In this paper, we propose a distributed approach for mapping a single large application to a heterogeneous grid environment. To minimize the execution time of the parallel application, we distribute the mapping overhead to the available nodes of the grid. This approach not only provides a fast mapping of tasks to resources but is also scalable. We adopt a hierarchical grid model and accomplish the job of mapping tasks to this topology using a scheduler tree. Results show that our three-phase algorithm provides high quality mappings, and is fast and scalable.
    Keywords: Computer Systems
    Type: IEEE 5th International Conference on Cluster Computing; Dec 01, 2003 - Dec 04, 2003; Hong Kong; China
    Format: text
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  • 3
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    Unstructured Adaptive Meshes: Bad for Your Memory? (2003)
    In:  CASI
    Details
    Publication Date: 2019-07-13
    Description: This viewgraph presentation explores the need for a NASA Advanced Supercomputing (NAS) parallel benchmark for problems with irregular dynamical memory access. This benchmark is important and necessary because: 1) Problems with localized error source benefit from adaptive nonuniform meshes; 2) Certain machines perform poorly on such problems; 3) Parallel implementation may provide further performance improvement but is difficult. Some examples of problems which use irregular dynamical memory access include: 1) Heat transfer problem; 2) Heat source term; 3) Spectral element method; 4) Base functions; 5) Elemental discrete equations; 6) Global discrete equations. Nonconforming Mesh and Mortar Element Method are covered in greater detail in this presentation.
    Keywords: Computer Operations and Hardware
    Type: ADAPT03: Conference on Adaptive Methods for PDEs and Large-Scale Computation; Oct 11, 2003 - Oct 12, 2003; Troy, NY; United States
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  • 4
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    Ordering Unstructured Meshes for Sparse Matrix Computations on Leading Parallel Systems (2000)
    In:  CASI
    Details
    Publication Date: 2019-07-13
    Description: The ability of computers to solve hitherto intractable problems and simulate complex processes using mathematical models makes them an indispensable part of modern science and engineering. Computer simulations of large-scale realistic applications usually require solving a set of non-linear partial differential equations (PDES) over a finite region. For example, one thrust area in the DOE Grand Challenge projects is to design future accelerators such as the SpaHation Neutron Source (SNS). Our colleagues at SLAC need to model complex RFQ cavities with large aspect ratios. Unstructured grids are currently used to resolve the small features in a large computational domain; dynamic mesh adaptation will be added in the future for additional efficiency. The PDEs for electromagnetics are discretized by the FEM method, which leads to a generalized eigenvalue problem Kx = AMx, where K and M are the stiffness and mass matrices, and are very sparse. In a typical cavity model, the number of degrees of freedom is about one million. For such large eigenproblems, direct solution techniques quickly reach the memory limits. Instead, the most widely-used methods are Krylov subspace methods, such as Lanczos or Jacobi-Davidson. In all the Krylov-based algorithms, sparse matrix-vector multiplication (SPMV) must be performed repeatedly. Therefore, the efficiency of SPMV usually determines the eigensolver speed. SPMV is also one of the most heavily used kernels in large-scale numerical simulations.
    Keywords: Computer Systems
    Type: Irregular; May 01, 2000; Cancun; Mexico
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  • 5
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    Memory-Intensive Benchmarks: IRAM vs. Cache-Based Machines (2002)
    In:  CASI
    Details
    Publication Date: 2019-07-13
    Description: The increasing gap between processor and memory performance has lead to new architectural models for memory-intensive applications. In this paper, we explore the performance of a set of memory-intensive benchmarks and use them to compare the performance of conventional cache-based microprocessors to a mixed logic and DRAM processor called VIRAM. The benchmarks are based on problem statements, rather than specific implementations, and in each case we explore the fundamental hardware requirements of the problem, as well as alternative algorithms and data structures that can help expose fine-grained parallelism or simplify memory access patterns. The benchmarks are characterized by their memory access patterns, their basic control structures, and the ratio of computation to memory operation.
    Keywords: Computer Operations and Hardware
    Type: IPDPS Conference; Apr 15, 2002 - Apr 19, 2002; Fort Lauderdale, FL; United States
    Format: text
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  • 6
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    A Performance Evaluation of the Cray X1 for Scientific Applications (2003)
    In:  CASI
    Details
    Publication Date: 2019-07-13
    Description: The last decade has witnessed a rapid proliferation of superscalar cache-based microprocessors to build high-end capability and capacity computers because of their generality, scalability, and cost effectiveness. However, the recent development of massively parallel vector systems is having a significant effect on the supercomputing landscape. In this paper, we compare the performance of the recently-released Cray X1 vector system with that of the cacheless NEC SX-6 vector machine, and the superscalar cache-based IBM Power3 and Power4 architectures for scientific applications. Overall results demonstrate that the X1 is quite promising, but performance improvements are expected as the hardware, systems software, and numerical libraries mature. Code reengineering to effectively utilize the complex architecture may also lead to significant efficiency enhancements.
    Keywords: Computer Systems
    Type: 6th International Meeting on High Performance Computing for Computational Science; Jun 28, 2004 - Jun 30, 2004; Valencia; Spain
    Format: application/pdf
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  • 7
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    Performance Analysis of a Hybrid Overset Multi-Block Application on Multiple Architectures (2003)
    In:  CASI
    Details
    Publication Date: 2019-07-13
    Description: This paper presents a detailed performance analysis of a multi-block overset grid compu- tational fluid dynamics app!ication on multiple state-of-the-art computer architectures. The application is implemented using a hybrid MPI+OpenMP programming paradigm that exploits both coarse and fine-grain parallelism; the former via MPI message passing and the latter via OpenMP directives. The hybrid model also extends the applicability of multi-block programs to large clusters of SNIP nodes by overcoming the restriction that the number of processors be less than the number of grid blocks. A key kernel of the application, namely the LU-SGS linear solver, had to be modified to enhance the performance of the hybrid approach on the target machines. Investigations were conducted on cacheless Cray SX6 vector processors, cache-based IBM Power3 and Power4 architectures, and single system image SGI Origin3000 platforms. Overall results for complex vortex dynamics simulations demonstrate that the SX6 achieves the highest performance and outperforms the RISC-based architectures; however, the best scaling performance was achieved on the Power3.
    Keywords: Computer Systems
    Type: HiPC International Conference on High Performance Computing; Dec 17, 2003 - Dec 20, 2003; Hyderabad; India
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  • 8
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    Message Passing vs. Shared Address Space on a Cluster of SMPs (2000)
    In:  CASI
    Details
    Publication Date: 2019-07-13
    Description: The convergence of scalable computer architectures using clusters of PCs (or PC-SMPs) with commodity networking has become an attractive platform for high end scientific computing. Currently, message-passing and shared address space (SAS) are the two leading programming paradigms for these systems. Message-passing has been standardized with MPI, and is the most common and mature programming approach. However message-passing code development can be extremely difficult, especially for irregular structured computations. SAS offers substantial ease of programming, but may suffer from performance limitations due to poor spatial locality, and high protocol overhead. In this paper, we compare the performance of and programming effort, required for six applications under both programming models on a 32 CPU PC-SMP cluster. Our application suite consists of codes that typically do not exhibit high efficiency under shared memory programming. due to their high communication to computation ratios and complex communication patterns. Results indicate that SAS can achieve about half the parallel efficiency of MPI for most of our applications: however, on certain classes of problems SAS performance is competitive with MPI. We also present new algorithms for improving the PC cluster performance of MPI collective operations.
    Keywords: Computer Operations and Hardware
    Type: IPDPS Conference; Apr 23, 2001; San Francisco, CA; United States
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  • 9
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    Beyond the NAS Parallel Benchmarks: Measuring Dynamic Program Performance and Grid Computing Applications (2001)
    In:  CASI
    Details
    Publication Date: 2019-07-13
    Description: The contents include: 1) A brief history of NPB; 2) What is (not) being measured by NPB; 3) Irregular dynamic applications (UA Benchmark); and 4) Wide area distributed computing (NAS Grid Benchmarks-NGB). This paper is presented in viewgraph form.
    Keywords: Computer Systems
    Type: Workshop on the Performance Characterization of Algorithms; Jul 16, 2001 - Jul 17, 2001; Oakland, CA; United States
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  • 10
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    A Performance Evaluation of the Cray X1 for Scientific Applications (2004)
    In:  CASI
    Details
    Publication Date: 2019-07-10
    Description: The last decade has witnessed a rapid proliferation of superscalar cache-based microprocessors to build high-end capability and cost effectiveness. However, the recent development of massively parallel vector systems is having a significant effect on the supercomputing landscape. In this paper, we compare the performance of the recently released Cray X1 vector system with that of the cacheless NEC SX-6 vector machine, and the superscalar cache-based IBM Power3 and Power4 architectures for scientific applications. Overall results demonstrate that the X1 is quite promising, but performance improvements are expected as the hardware, systems software, and numerical libraries mature. Code reengineering to effectively utilize the complex architecture may also lead to significant efficiency enhancements.
    Keywords: Computer Operations and Hardware
    Format: text
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