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  • 1
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2011. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Marine Geology 287 (2011): 14-30, doi:10.1016/j.margeo.2011.07.001.
    Description: A 4500-year record of hurricane-induced storm surges is developed from sediment cores collected from a coastal sinkhole near Apalachee Bay, Florida. Recent deposition of sand layers in the upper sediments of the pond was found to be contemporaneous with significant, historic storm surges at the site modeled using SLOSH and the Best Track, post-1851 A.D. dataset. Using the historic portion of the record for calibration, paleohurricane deposits were identified by sand content and dated using radiocarbon-based age models. Marine-indicative foraminifera, some originating at least 5 km offshore, were present in several modern and ancient storm deposits. The presence and long-term preservation of offshore foraminifera suggest that this site and others like it may yield promising microfossil-based paleohurricane reconstructions in the future. Due to the sub-decadal (~ 7 year) resolution of the record and the site’s high susceptibility to hurricane-generated storm surges, the average, local frequency of recorded events, approximately 3.9 storms per century, is greater than that of previously published paleohurricane records from the region. The high incidence of recorded events permitted a time series of local hurricane frequency during the last five millennia to be constructed. Variability in the frequency of the largest storm layers was found to be greater than what would likely occur by chance alone, with intervals of both anomalously high and low storm frequency identified. However, the rate at which smaller layers were deposited was relatively constant over the last five millennia. This may suggest that significant variability in hurricane frequency has occurred only in the highest magnitude events. The frequency of high magnitude events peaked near 6 storms per century between 2800 and 2300 years ago. High magnitude events were relatively rare with about 0-3 storms per century occurring between 1900 to 1600 years ago and between 400 to 150 years ago. A marked decline in the number of large storm deposits, which began around 600 years ago, has persisted through present with below average frequency over the last 150 years when compared to the preceding five millennia.
    Description: Funding for this research was supported by the National Science Foundation and the Coastal Ocean Institute. the model. The Florida State University Marine Laboratory provided lodging during fieldwork. This research was completed during an American Meteorological Society Graduate Fellowship, National Science Foundation Graduate Fellowship and Coastal Ocean Institute Fellowship. This work was further supported by National Science Foundation award #OCE-0903020.
    Keywords: Paleotempestology ; Paleohurricane ; Hurricane ; Tropical cyclone ; Sinkhole ; Storm surge ; SLOSH ; Gulf of Mexico ; Apalachee Bay ; Holocene
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 2
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2008. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry Geophysics Geosystems 9 (2008): Q09V10, doi:10.1029/2008GC002043.
    Description: Patterns of overwash deposition observed within back-barrier sediment archives can indicate past changes in tropical cyclone activity; however, it is necessary to evaluate the significance of observed trends in the context of the full range of variability under modern climate conditions. Here we present a method for assessing the statistical significance of patterns observed within a sedimentary hurricane-overwash reconstruction. To alleviate restrictions associated with the limited number of historical hurricanes affecting a specific site, we apply a recently published technique for generating a large number of synthetic storms using a coupled ocean-atmosphere hurricane model set to simulate modern climatology. Thousands of overwash records are generated for a site using a random draw of these synthetic hurricanes, a prescribed threshold for overwash, and a specified temporal resolution based on sedimentation rates observed at a particular site. As a test case we apply this Monte Carlo technique to a hurricane-induced overwash reconstruction developed from Laguna Playa Grande (LPG), a coastal lagoon located on the island of Vieques, Puerto Rico in the northeastern Caribbean. Apparent overwash rates in the LPG overwash record are observed to be four times lower between 2500 and 1000 years B.P. when compared to apparent overwash rates during the last 300 years. However, probability distributions based on Monte Carlo simulations indicate that as much as 65% of this drop can be explained by a reduction in the temporal resolution for older sediments due to a decrease in sedimentation rates. Periods of no apparent overwash activity at LPG between 2500 and 3600 years B.P. and 500–1000 years B.P. are exceptionally long and are unlikely to occur (above 99% confidence) under the current climate conditions. In addition, breaks in activity are difficult to produce even when the hurricane model is forced to a constant El Niño state. Results from this study continue to support the interpretation that the western North Atlantic has exhibited significant changes in hurricane climatology over the last 5500 years.
    Description: Funding for this research was provided by the Earth Systems History Program of the National Science Foundation, Risk Prediction Initiative, National Geographic Society, Coastal Ocean Institute at WHOI, and the Andrew W. Mellon Foundation Endowed Fund for Innovative Research.
    Keywords: Tropical cyclones ; Paleotempestology ; Paleoclimate ; Holocene ; Climate change ; Sedimentology
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 3
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    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Publication Date: 2022-05-25
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution September 2011
    Description: Hurricane activity in the Northeastern Gulf of Mexico and its relationship to regional and large-scale climate variability during the Late Holocene is explored. A 4500-year record of hurricane-induced storm surges is developed from sediment cores collected from a coastal sinkhole near Apalachee Bay, Florida. Reconstructed hurricane frequency is shown to exhibit statistically significant variability with the greatest activity occurring between 2700 and 2400 years ago and the least activity between 1900 to 1600 years ago and after 600 years ago. Proxy records of stormrelevant climate variables contain similar timescales of variability and suggest both regional and large-scale mechanisms have influenced hurricane activity on centennial to millennial timescales. In particular, low-frequency migrations of the Loop Current may exercise control over regional hurricane activity by changing the thermal structure of the upper ocean and influencing the role of storm-induced upwelling on hurricane intensification. A new method for estimating the frequency of hurricanegenerated storm surges is presented and applied to Apalachee Bay, Florida. Multisite paleohurricane reconstructions from this region are developed, and the effects of geographic boundary conditions and temporal resolution on estimates of paleohurricane frequency are explored.
    Description: Financial support provided by the American Meteorological Society, the National Science Foundation, the Bermuda Risk Prediction Initiative, the National Center for Airborne Laser Mapping, and the Coastal Ocean Institute.
    Keywords: Paleoclimatology ; Holocene ; Ocean currents
    Repository Name: Woods Hole Open Access Server
    Type: Thesis
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  • 4
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2013. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry, Geophysics, Geosystems 14 (2013): 2993–3008, doi:10.1002/ggge.20217.
    Description: Recent work suggests that the patterns of intense (≥category 3 on the Saffir-Simpson scale) hurricane strikes over the last few millennia might differ from that of overall hurricane activity during this period. Prior studies typically rely on assigning a threshold storm intensity required to produce a sedimentological overwash signal at a particular coastal site based on historical analogs. Here, we improve on this approach by presenting a new inverse-model technique that constrains the most likely wind speeds required to transport the maximum grain size within resultant storm deposits. As a case study, the technique is applied to event layers observed in sediments collected from a coastal sinkhole in northwestern Florida. We find that (1) simulated wind speeds for modern deposits are consistent with the intensities for historical hurricanes affecting the site, (2) all deposits throughout the ∼2500 year record are capable of being produced by hurricanes, and (3) a period of increased intense hurricane frequency is observed between ∼1700 and ∼600 years B.P. and decreased intense storm frequency is observed from ∼2500 to ∼1700 and ∼600 years B.P. to the present. This is consistent with prior reconstructions from nearby sites. Changes in the frequency of intense hurricane strikes may be related to the degree of penetration of the Loop Current in the Gulf of Mexico.
    Description: This work was supported by the National Science Foundation.
    Description: 2014-02-22
    Keywords: Tropical cyclones ; Paleotempestology ; Paleoclimate ; Holocene ; Inverse-modeling ; Sedimentology
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 5
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Atmospheres 119 (2014): 8606–8623, doi:10.1002/2014JD021584.
    Description: Historical tropical cyclone (TC) and storm surge records are often too limited to quantify the risk to local populations. Paleohurricane sediment records uncover long-term TC activity, but interpreting these records can be difficult and can introduce significant uncertainties. Here we compare and combine climatological-hydrodynamic modeling (including a method to account for storm size uncertainty), historical observations, and paleohurricane records to investigate local surge risk, using Apalachee Bay in northwest Florida as an example. The modeling reveals relatively high risk, with 100 year, 500 year, and “worst case” surges estimated to be about 6.3 m, 8.3 m, and 11.3 m, respectively, at Bald Point (a paleorecord site) and about 7.4 m, 9.7 m, and 13.3 m, respectively, at St. Marks (the head of the Bay), supporting the inference from paleorecords that Apalachee Bay has frequently suffered severe inundation for thousands of years. Both the synthetic database and paleorecords contain a much higher frequency of extreme events than the historical record; the mean return period of surges greater than 5 m is about 40 years based on synthetic modeling and paleoreconstruction, whereas it is about 400 years based on historical storm analysis. Apalachee Bay surge risk is determined by storms of broad characteristics, varies spatially over the area, and is affected by coastally trapped Kelvin waves, all of which are important features to consider when accessing the risk and interpreting paleohurricane records. In particular, neglecting size uncertainty may induce great underestimation in surge risk, as the size distribution is positively skewed. While the most extreme surges were generated by the uppermost storm intensities, medium intensity storms (categories 1–3) can produce large to extreme surges, due to their larger inner core sizes. For Apalachee Bay, the storms that induced localized barrier breaching and limited sediment transport (overwash regime; surge between 3 and 5 m) are most likely to be category 2 or 3 storms, and the storms that inundated the entire barrier and deposited significantly more coarse materials (inundation regime; surge 〉 5 m) are most likely to be category 3 or 4 storms.
    Description: This research was funded by National Oceanic and Atmospheric Administration (NOAA) grant NA11OAR4310101 and National Science Foundation (NSF) grants OCE-0903020 and OCE-1250506.
    Description: 2015-01-21
    Keywords: Hurricane ; Storm surge ; Paleohurricane ; Risk assessment
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 6
    Publication Date: 2012-01-17
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 7
  • 8
    Publication Date: 2011-07-13
    Description: The platelet-tethering function of von Willebrand factor (VWF) is proteolytically regulated by ADAMTS13 (a disintegrin and metalloproteinase with a thrombospondin type 1 motif, member 13), which cleaves the Tyr1605-Met1606 (P1-P1′) bond in the VWF A2 domain. To date, most of the functional interactions between ADAMTS13 and VWF that have been characterized involve VWF residues that are C terminal to the scissile bond. We now demonstrate that the substrate P3 position in VWF, Leu1603, is a critical determinant of VWF proteolysis. When VWF Leu1603 was substituted with Ser, Ala, Asn, or Lys in a short VWF substrate, VWF115, proteolysis was either greatly reduced or ablated (up to 400-fold reduction in kcat/Km). As Leu1603 must interact with residues proximate to the Zn2+ ion coordinated in the active center of ADAMTS13, we sought the corresponding S3 interacting residues. Substitution of 10 candidate residues in the metalloprotease domain of ADAMTS13 identified two spatially separated clusters centered on Leu198 or Val195 (acting with Leu232 and Leu274, or with Leu151, respectively), as possible subsites interacting with VWF. These experimental findings using the short VWF115 substrate were replicated using full-length VWF. It is hypothesized that VWF Leu1603 interacts with ADAMTS13 Leu198/Leu232/Leu274 and that Val195/Leu151 may form part of a S1 subsite. The recognition of VWF Leu1603 by ADAMTS13, in conjunction with previously reported remote exosites C terminal of the cleavage site, suggests a mechanism whereby the VWF P1-P1′ scissile bond is brought into position over the active site for cleavage. Together with recently characterized remote exosite interactions, these findings provide a general framework for understanding the ADAMTS family substrate interactions.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 9
    Publication Date: 2011-09-14
    Description: River bifurcations are key nodes within braided river systems controlling the flow and sediment partitioning and therefore the dynamics of the river braiding process. Recent research has shown that certain geometrical configurations induce instabilities that lead to downstream mid-channel bar formation and the formation of bifurcations. However, we currently have a poor understanding of the flow division process within bifurcations and the flow dynamics in the downstream bifurcates, both of which are needed to understand bifurcation stability. This paper presents results of a numerical sensitivity experiment undertaken using Computational Fluid Dynamics (CFD) with the purpose of understanding the flow dynamics of a series of idealised bifurcations. A geometric sensitivity analysis is undertaken for a range of channel slopes (0.005 to 0.03), bifurcation angles (22° to 42°) and a restricted set of inflow conditions based upon simulating flow through meander bends with different curvature on the flow field dynamics through the bifurcation. The results demonstrate that the overall slope of the bifurcation affects the velocity of flow through the bifurcation and when slope asymmetry is introduced, the flow structures in the bifurcation are modified. In terms of bifurcation evolution the most important observation appears to be that once slope asymmetry is greater than 0.2 the flow within the steep bifurcate shows potential instability and the potential for alternate channel bar formation. Bifurcation angle also defines the flow structures within the bifurcation with an increase in bifurcation angle increasing the flow velocity down both bifurcates. However, redistributive effects of secondary circulation caused by upstream curvature can very easily counter the effects of local bifurcation characteristics. Copyright © 2011 John Wiley & Sons, Ltd.
    Print ISSN: 0197-9337
    Electronic ISSN: 1096-9837
    Topics: Geography , Geosciences
    Published by Wiley
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  • 10
    Publication Date: 2012-02-01
    Description: The p53 transcription factor modulates gene expression programs that induce cell cycle arrest, senescence, or apoptosis, thereby preventing tumorigenesis. However, the mechanisms by which these fates are selected are unclear. Our objective is to understand p53 target gene selection and, thus, enable its optimal manipulation for cancer therapy. We have generated targeted transgenic reporter mice in which EGFP expression is driven by p53 transcriptional activity at a response element from either the p21 or Puma promoter, which induces cell cycle arrest/senescence and apoptosis, respectively. We demonstrate that we could monitor p53 activity in vitro and in vivo and detect variations in p53 activity depending on the response element, tissue type, and stimulus, thereby validating our reporter system and illustrating its utility for preclinical drug studies. Our results also show that the sequence of the p53 response element itself is sufficient to strongly influence p53 target gene selection. Finally, we use our reporter system to provide evidence for p53 transcriptional activity during early embryogenesis, showing that p53 is active as early as embryonic day 3.5 and that p53 activity becomes restricted to embryonic tissue by embryonic day 6.5. The data from this study demonstrate that these reporter mice could serve as powerful tools to answer questions related to basic biology of the p53 pathway, as well as cancer therapy and drug discovery.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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