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  • 1
    Publication Date: 2018-11-15
    Description: Otitis media (OM) is a common polymicrobial infection of the middle ear in children under the age of 15 years. A widely used experimental strategy to analyse roles of specific phenotypes of bacterial pathogens of OM is to study changes in co-infection kinetics of bacterial populations in animal models when a wild-type bacterial strain is replaced by a specific isogenic mutant strain in the co-inoculating mixtures. As relationships between the OM bacterial pathogens within the host are regulated by many interlinked processes, connecting the changes in the co-infection kinetics to a bacterial phenotype can be challenging. We investigated middle ear co-infections in adult chinchillas ( Chinchilla lanigera ) by two major OM pathogens: non-typeable Haemophilus influenzae (NTHi) and Moraxella catarrhalis (Mcat), as well as isogenic mutant strains in each bacterial species. We analysed the infection kinetic data using Lotka–Volterra population dynamics, maximum entropy inference and Akaike information criteria-(AIC)-based model selection. We found that changes in relationships between the bacterial pathogens that were not anticipated in the design of the co-infection experiments involving mutant strains are common and were strong regulators of the co-infecting bacterial populations. The framework developed here allows for a systematic analysis of host–host variations of bacterial populations and small sizes of animal cohorts in co-infection experiments to quantify the role of specific mutant strains in changing the infection kinetics. Our combined approach can be used to analyse the functional footprint of mutant strains in regulating co-infection kinetics in models of experimental OM and other polymicrobial diseases.
    Keywords: microbiology, biophysics, computational biology
    Electronic ISSN: 2054-5703
    Topics: Natural Sciences in General
    Published by Royal Society
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  • 2
    Publication Date: 2015-06-09
    Description: Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disorder primarily affecting motor neurons. Mutations in optineurin cause a small proportion of familial ALS cases, and wild-type (WT) optineurin is misfolded and forms inclusions in sporadic ALS patient motor neurons. However, it is unknown how optineurin mutation or misfolding leads to ALS. Optineurin acts an adaptor protein connecting the molecular motor myosin VI to secretory vesicles and autophagosomes. Here, we demonstrate that ALS-linked mutations p.Q398X and p.E478G disrupt the association of optineurin with myosin VI, leading to an abnormal diffuse cytoplasmic distribution, inhibition of secretory protein trafficking, endoplasmic reticulum (ER) stress and Golgi fragmentation in motor neuron-like NSC-34 cells. We also provide further insight into the role of optineurin as an autophagy receptor. WT optineurin associated with lysosomes and promoted autophagosome fusion to lysosomes in neuronal cells, implying that it mediates trafficking of lysosomes during autophagy in association with myosin VI. However, either expression of ALS mutant optineurin or small interfering RNA-mediated knockdown of endogenous optineurin blocked lysosome fusion to autophagosomes, resulting in autophagosome accumulation. Together these results indicate that ALS-linked mutations in optineurin disrupt myosin VI-mediated intracellular trafficking processes. In addition, in control human patient tissues, optineurin displayed its normal vesicular localization, but in sporadic ALS patient tissues, vesicles were present in a significantly decreased proportion of motor neurons. Optineurin binding to myosin VI was also decreased in tissue lysates from sporadic ALS spinal cords. This study therefore links several previously described pathological mechanisms in ALS, including defects in autophagy, fragmentation of the Golgi and induction of ER stress, to disruption of optineurin function. These findings also indicate that optineurin–myosin VI dysfunction is a common feature of both sporadic and familial ALS.
    Print ISSN: 0964-6906
    Electronic ISSN: 1460-2083
    Topics: Biology , Medicine
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  • 3
    Publication Date: 2015-02-11
    Description: This qualitative study examines membership processes in groups operating in an uncertain environment that prevents them from fully predefining new members’ roles. I describe how nine elite high-end, cutting-edge culinary groups in the U.S. and Europe, ranging from innovative restaurants to culinary R&D groups, use negotiated joining—a previously undocumented process—to systematically construct and fill these emergent, open-ended roles. I show that negotiated joining is a consistently patterned, iterative process that begins with a role that both aspirant and target group explicitly understand to be provisional. This provisional role is then jointly modified and constructed by the aspirant and target group through repeated iterations of proposition, validation through trial and evaluation, and selective integration of validated role components. The initially provisional role stabilizes and the aspirant achieves membership if enough role components are validated; otherwise the negotiated joining process is abandoned. Negotiated joining allows the aspirant and target group to learn if a mutually desirable role is likely and, if so, to construct such a role. In addition, the provisional roles in negotiated joining can support absorptive capacity by allowing novel role components to enter target groups through aspirants’ efforts to construct stable roles for themselves, while the internal adjustment involved in integrating newly validated role components can have the unintended side effect of supporting adaptation by providing opportunities for the groups to use these novel role components to modify their role structure and goals to suit a changing and uncertain environment. Negotiated joining thus reveals role ambiguity’s hitherto unexamined beneficial consequences and provides a foundation for a contingency theory of new-member acquisition.
    Print ISSN: 0001-8392
    Electronic ISSN: 1930-3815
    Topics: Economics
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  • 4
    Publication Date: 2017-10-29
    Description: Entropy, Vol. 19, Pages 487: Real-Time Robust Voice Activity Detection Using the Upper Envelope Weighted Entropy Measure and the Dual-Rate Adaptive Nonlinear Filter Entropy doi: 10.3390/e19110487 Authors: Wei Ong Alan Tan V. Vengadasalam Cheah Tan Thean Ooi Voice activity detection (VAD) is a vital process in voice communication systems to avoid unnecessary coding and transmission of noise. Most of the existing VAD algorithms continue to suffer high false alarm rates and low sensitivity when the signal-to-noise ratio (SNR) is low, at 0 dB and below. Others are developed to operate in offline mode or are impractical for implementation in actual devices due to high computational complexity. This paper proposes the upper envelope weighted entropy (UEWE) measure as a means to enable high separation of speech and non-speech segments in voice communication. The asymmetric nonlinear filter (ANF) is employed in UEWE to extract the adaptive weight factor that is subsequently used to compensate the noise effect. In addition, this paper also introduces a dual-rate adaptive nonlinear filter (DANF) with high adaptivity to rapid time-varying noise for computation of the decision threshold. Performance comparison with standard and recent VADs shows that the proposed algorithm is superior especially in real-time practical applications.
    Electronic ISSN: 1099-4300
    Topics: Chemistry and Pharmacology , Physics
    Published by MDPI Publishing
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  • 5
    Publication Date: 2018-07-18
    Description: Energies, Vol. 11, Pages 1860: Impact of Partial Shading on the P-V Characteristics and the Maximum Power of a Photovoltaic String Energies doi: 10.3390/en11071860 Authors: J. C. Teo Rodney H. G. Tan V. H. Mok Vigna K. Ramachandaramurthy ChiaKwang Tan A photovoltaic system is highly susceptible to partial shading. Based on the functionality of a photovoltaic system that relies on solar irradiance to generate electrical power, it is tacitly assumed that the maximum power of a partially shaded photovoltaic system always decreases as the shading heaviness increases. However, the literature has reported that this might not be the case. The maximum power of a partially shaded photovoltaic system under a fixed configuration and partial shading pattern can be highly insusceptible to shading heaviness when a certain critical point is met. This paper presents an investigation of the impact of partial shading and the critical point that reduce the susceptibility of shading heaviness. Photovoltaic string formed by series-connected photovoltaic modules is used in this research. The investigation of the P-V characteristic curve under different numbers of shaded modules and shading heaviness suggests that the photovoltaic string becomes insusceptible to shading heaviness when the shaded modules irradiance reaches a certain critical point. The critical point can vary based on the number of the shaded modules. The formulated equation in this research contributes to determining the critical point for different photovoltaic string sizes and numbers of shaded modules in the photovoltaic string.
    Electronic ISSN: 1996-1073
    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Published by MDPI Publishing
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  • 6
    Publication Date: 2015-11-01
    Print ISSN: 0264-1275
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Published by Elsevier
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  • 7
    Publication Date: 2017-01-25
    Description: Author(s): Xiaoyan Tan, V. Ovidiu Garlea, Kirill Kovnir, Corey M. Thompson, Tongshuai Xu, Huibo Cao, Ping Chai, Zachary P. Tener, Shishen Yan, Peng Xiong, and Michael Shatruk L a 0.25 P r 0.75 C o 2 P 2 crystallizes in the tetragonal ThC r 2 S i 2 structure type and shows multiple magnetic phase transitions driven by changes in temperature and magnetic field. The nature of these transitions was investigated by a combination of magnetic and magnetoresistance measurements and both single… [Phys. Rev. B 95, 024428] Published Tue Jan 24, 2017
    Keywords: Magnetism
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 8
    Publication Date: 2016-12-07
    Description: Silicon carbide nanomaterials especially silicon carbide nanowhiskers (SiCNWs) has been known for its excellent properties such as high thermal stability, good chemical inertness and excellent electronic properties. In this paper, a green synthesis of SiCNWs by microwave heating of blends of palm kernel shell (PKS) and silica was presented. The effect of ratio of PKS and silica on the synthesis process was also studied and reported. Blends of PKS and silica in different ratio were mixed homogenously in ultrasonic bath for 2 hours using ethanol as liquid medium. The blends were then dried on hotplate to remove the ethanol and compressed into pellets form.. Synthesis was conducted in 2.45 GHz multimode cavity at 1400 °C for 40 minutes. X-ray diffraction revealed that β-SiC was detected for samples synthesized from blends with ratio of PKS to silica of 5:1 and 7:1. FESEM images also show that SiCNWs with the average diameter of 70 nm were successfully formed from blends with ratio ...
    Print ISSN: 1757-8981
    Electronic ISSN: 1757-899X
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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  • 9
    Publication Date: 2015-04-23
    Print ISSN: 0014-4851
    Electronic ISSN: 1741-2765
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Published by Springer
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  • 10
    Publication Date: 2016-06-01
    Print ISSN: 1742-6588
    Electronic ISSN: 1742-6596
    Topics: Physics
    Published by Institute of Physics
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