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  • 2015-2019  (41)
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  • 1
    Keywords: Life sciences ; Virology ; Animal ecology ; Aquatic ecology ; Conservation biology ; Ecology ; Wildlife ; Fish ; Environmental health ; Life Sciences ; Animal Ecology ; Environmental Health ; Fish & Wildlife Biology & Management ; Virology ; Freshwater & Marine Ecology ; Conservation Biology/Ecology
    Description / Table of Contents: Introduction --- Distribution and Phylogeny of Ranaviruses --- Host-pathogen Ecology and Evolution --- Molecular Biology of Ranaviruses --- Immune Evasion and Host Immunity --- Pathology and Diagnostics --- Design and Analysis of Ranavirus Studies --- Global Ranavirus Consortium
    Pages: Online-Ressource (X, 246 pages) , 25 illustrations, 21 illustrations in color
    ISBN: 9783319137551
    Language: English
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  • 2
    Publication Date: 2024-03-15
    Description: Ocean acidification results in co-varying inorganic carbon system variables. Of these, an explicit focus on pH and organismal acid–base regulation has failed to distinguish the mechanism of failure in highly sensitive bivalve larvae. With unique chemical manipulations of seawater we show definitively that larval shell development and growth are dependent on seawater saturation state, and not on carbon dioxide partial pressure or pH. Although other physiological processes are affected by pH, mineral saturation state thresholds will be crossed decades to centuries ahead of pH thresholds owing to nonlinear changes in the carbonate system variables as carbon dioxide is added. Our findings were repeatable for two species of bivalve larvae could resolve discrepancies in experimental results, are consistent with a previous model of ocean acidification impacts due to rapid calcification in bivalve larvae, and suggest a fundamental ocean acidification bottleneck at early life-history for some marine keystone species.
    Keywords: Alkalinity, total; Animalia; Aragonite saturation state; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Crassostrea gigas; Development; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Laboratory experiment; Mollusca; Mytilus galloprovincialis; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Proportion; Proportion, standard deviation; Registration number of species; Salinity; Shell length; Shell length, standard deviation; Single species; Species; Temperate; Temperature, water; Treatment; Type; Uniform resource locator/link to reference; Zooplankton
    Type: Dataset
    Format: text/tab-separated-values, 1784 data points
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  • 3
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    In:  Supplement to: Waldbusser, George G; Gray, Matthew W; Hales, Burke; Langdon, Chris; Haley, Brian A; Gimenez, Iria; Smith, Stephanie R; Brunner, Elizabeth L; Hutchinson, Greg (2016): Slow shell building, a possible trait for resistance to the effects of acute ocean acidification. Limnology and Oceanography, 61(6), 1969-1983, https://doi.org/10.1002/lno.10348
    Publication Date: 2024-03-15
    Description: Increasing anthropogenic carbon dioxide is altering marine carbonate chemistry through a process called ocean acidification. Many calcium carbonate forming organisms are sensitive to changes in marine carbonate chemistry, especially mollusk bivalve larvae at the initial shell building stage. Rapid calcification, limited energy reserves, and more exposed calcification surfaces, are traits at this stage that increase vulnerability to ocean acidification through our previously argued kinetic-energetic hypothesis. These developmental traits are common to broadcast spawning bivalve species that are the focus of most ocean acidification studies to date. Some oyster species brood their young, which results in slower development of the embryos through the initial shell formation stage. We examined the responses of the brooding Olympia oyster, Ostrea lurida, during their initial shell building stage. We extracted fertilized eggs from, O. lurida, prior to shell development, then exposed developing embryos to a wide range of marine carbonate chemistry conditions. Surprisingly, O. lurida showed no acute negative response to any ocean acidification treatments. Compared to the broadcast spawning Pacific oyster, Crassostrea gigas, calcification rate and standardized endogenous energy lipid consumption rate were nearly 10 and 50 times slower, respectively. Our results suggest that slow shell building may lessen the energetic burden of acidification at this stage and provides additional support for our kinetic-energetic hypothesis. Furthermore, these results may represent an example of exaptation; fitness conveyed by a coopted trait that evolved for another purpose, a concept largely lacking in the current perspective of adaptation and global climate change.
    Keywords: Alkalinity, total; Animalia; Aragonite saturation state; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Laboratory experiment; Mollusca; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Ostrea lurida; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Proportion; Registration number of species; Replicate; Salinity; Shell length; Shell length, standard deviation; Single species; Species; Temperate; Temperature, water; Treatment; Type; Uniform resource locator/link to reference; Zooplankton
    Type: Dataset
    Format: text/tab-separated-values, 3451 data points
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  • 4
    Publication Date: 2024-03-15
    Keywords: Alkalinity, total; Animalia; Aragonite saturation state; Behaviour; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Development; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Laboratory experiment; Mediterranean Sea; Mollusca; Mytilus californianus; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Proportion; Proportion, standard deviation; Respiration; Respiration rate, oxygen, per individual; Respiration rate, oxygen, standard deviation; Salinity; Shell length; Shell length, standard deviation; Single species; Species; Temperate; Temperature, water; Treatment; Zooplankton
    Type: Dataset
    Format: text/tab-separated-values, 470 data points
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  • 5
    Publication Date: 2018-04-16
    Description: The discovery that humans can produce potent broadly neutralizing antibodies (bNAbs) to several different epitopes on the HIV-1 spike has reinvigorated efforts to develop an antibody-based HIV-1 vaccine. Antibody cloning from single cells revealed that nearly all bNAbs show unusual features that could help explain why it has not been possible to elicit them by traditional vaccination and instead would require a sequence of different immunogens. This idea is supported by experiments with genetically modified immunoglobulin (Ig) knock-in mice. Sequential immunization with a series of specifically designed immunogens was required to shepherd the development of bNAbs. However, knock-in mice contain superphysiologic numbers of bNAb precursor-expressing B cells, and therefore how these results can be translated to a more physiologic setting remains to be determined. Here we make use of adoptive transfer experiments using knock-in B cells that carry a synthetic intermediate in the pathway to anti–HIV-1 bNAb development to examine how the relationship between B cell receptor affinity and precursor frequency affects germinal center (GC) B cell recruitment and clonal expansion. Immunization with soluble HIV-1 antigens can recruit bNAb precursor B cells to the GC when there are as few as 10 such cells per mouse. However, at low precursor frequencies, the extent of clonal expansion is directly proportional to the affinity of the antigen for the B cell receptor, and recruitment to GCs is variable and dependent on recirculation.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 6
    Publication Date: 2015-05-12
    Description: Journal of Proteome Research DOI: 10.1021/acs.jproteome.5b00203
    Print ISSN: 1535-3893
    Electronic ISSN: 1535-3907
    Topics: Chemistry and Pharmacology
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  • 7
    Publication Date: 2016-08-18
    Description: Journal of the American Chemical Society DOI: 10.1021/jacs.6b06770
    Print ISSN: 0002-7863
    Electronic ISSN: 1520-5126
    Topics: Chemistry and Pharmacology
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  • 8
    Publication Date: 2018-10-26
    Description: Structural dynamics of the E6AP/UBE3A-E6-p53 enzyme-substrate complex Structural dynamics of the E6AP/UBE3A-E6-p53 enzyme-substrate complex, Published online: 25 October 2018; doi:10.1038/s41467-018-06953-0 Oncoprotein E6 facilitates the E6AP-catalyzed ubiquitination of p53. Here, the authors study the structural basis of this process by qualitative and quantitative cross-linking mass spectrometry, providing insights into E6AP-E6-p53 complex assembly and the conformational dynamics that enable p53 ubiquitination.
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 9
    Publication Date: 2017-08-01
    Description: Changes to animal movement in response to human-induced changes to the environment are of growing concern in conservation. Most research on this problem has focused on terrestrial endotherms, but changes to herpetofaunal movement are also of concern given their limited dispersal abilities and specialized thermophysiological requirements. Animals in the desert region of the southwestern United States are faced with environmental alterations driven by development (e.g., solar energy facilities) and climate change. Here, we study the movement ecology of a desert species of conservation concern, the Mojave desert tortoise ( Gopherus agassizii ). We collected weekly encounter locations of marked desert tortoises during the active (nonhibernation) seasons in 2013–2015, and used those data to discriminate movements among activity centers from those within them. We then modeled the probability of movement among activity centers using a suite of covariates describing characteristics of tortoises, natural and anthropogenic landscape features, vegetation, and weather. Multimodel inference indicated greatest support for a model that included individual tortoise characteristics, landscape features, and weather. After controlling for season, date, age, and sex, we found that desert tortoises were more likely to move among activity centers when they were further from minor roads and in the vicinity of barrier fencing; we also found that movement between activity centers was more common during periods of greater rainfall and during periods where cooler temperatures coincided with lower rainfall. Our findings indicate that landscape alterations and climate change both have the potential to impact movements by desert tortoises during the active season. This study provides an important baseline against which we can detect future changes in tortoise movement behavior. Solar energy development and a changing climate present potential challenges to movement by desert animals. We used sequential encounters of Mojave Desert Tortoises ( Gopherus agassizii ) to model variation in their weekly movements relative to individual, landscape, and weather characteristics. Movement was most influenced by variation in rainfall and temperature and the presence of minor roads and barrier fencing.
    Electronic ISSN: 2045-7758
    Topics: Biology
    Published by Wiley
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  • 10
    Publication Date: 2018-01-01
    Print ISSN: 0038-092X
    Electronic ISSN: 1471-1257
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Physics
    Published by Elsevier
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