ALBERT

Description: Multidrug resistance, strong side effects, and compliance problems in TB chemotherapy mandate new ways to kill Mycobacterium tuberculosis (Mtb). Here we show that deletion of the gene encoding homoserine transacetylase (metA) inactivates methionine and S-adenosylmethionine (SAM) biosynthesis in Mtb and renders this pathogen exquisitely sensitive to killing in immunocompetent or...

Description: Forests under novel environmental conditions (e.g., climate change), reintroduced species and modified disturbance regimes (e.g., exotic insect pests) with no analog in the past require mechanistic models to robustly project future forest dynamics. We used a forest landscape model based on physiological first principles to test hypotheses about the interactions among climate change, disturbance and land type on nascent efforts to restore blight –resistant American chestnut in the eastern U.S. Climate change should favor chestnut, but chestnut restoration will only modestly increase carbon stocks. Chestnut restoration will likely decrease both compositional and structural richness because chestnut will displaced some species. Abstract American chestnut (Castanea dentata) was once an important component forests in the central Appalachians (USA), but it was functionally extirpated nearly a century ago. Attempts are underway to reintroduce blight‐resistant chestnut to its former range, but it is uncertain how current forest composition, climate, and atmospheric changes and disturbance regimes will interact to determine future forest dynamics and ecosystem services. The combination of novel environmental conditions (e.g. climate change), a reintroduced tree species and new disturbance regimes (e.g. exotic insect pests, fire suppression) have no analog in the past that can be used to parameterize phenomenological models. We therefore used a mechanistic approach within the LANDIS‐II forest landscape model that relies on physiological first principles to project forest dynamics as the outcome of competition of tree cohorts for light and water as a function of temperature, precipitation, CO2 concentration, and life history traits. We conducted a factorial landscape simulation experiment to evaluate specific hypotheses about future forest dynamics in two study sites in the center of the former range of chestnut. Our results supported the hypotheses that climate change would favor chestnut because of its optimal temperature range and relative drought resistance, and that chestnut would be less competitive in the more mesic Appalachian Plateau province because competitors will be less stressed. The hypothesis that chestnut will increase carbon stocks was supported, although the increase was modest. Our results confirm that aggressive restoration is needed regardless of climate and soils, and that increased aggressiveness of chestnut restoration increased biomass accumulation. The hypothesis that chestnut restoration will increase both compositional and structural richness was not supported because chestnut displaced some species and age cohorts. Although chestnut restoration did not markedly enhance carbon stocks, our findings provide hope that this formerly important species can be successfully reintroduced and associated ecosystem services recovered.

Description: Klebsiella pneumoniae has become one of the most dangerous causative agents of hospital infections due to the acquisition of resistance to carbapenems, one of the last resort families of antibiotics. Resistance is usually mediated by carbapenemases coded for by different classes of genes. A prolonged outbreak of carbapenem-resistant K. pneumoniae infections has been recently described in northeastern Ohio. Most strains isolated from patients during this outbreak belong to MLST sequence type 258 (ST258). To understand more about this outbreak two isolates (strains 140 and 677), one of them responsible for a fatal infection, were selected for genome comparison analyses. Whole genome map and sequence comparisons demonstrated that both strains are highly related showing 99% average nucleotide identity. However, the genomes differ at the so-called high heterogeneity zone (HHZ) and other minor regions. This study identifies the potential value of the HHZ as a potential marker for K. pneumoniae clinical and epidemiological studies.

Description: The commercially important plants in the genus Cyclopia spp. are indigenous to the Cape Floristic Region of South Africa and are used to manufacture an herbal tea known as honeybush tea. Growing in the low nutrient fynbos soils, these plants are highly dependent on symbiotic interactions with soil microorganisms for nutrient acquisition. The aim of this study was to investigate the soil bacterial communities associated with two commercially important Cyclopia species, namely C. subternata and C. longifolia . Specific interest was the differences between rhizosphere and bulk soil collected from natural sites and commercially grown plants. Samples were collected on two occasions to include a dry summer and wet winter season. Results showed that the dominant bacterial taxa associated with these plants included Acidobacteria, Actinobacteria, Bacteroidetes and Proteobacteria. Commercial and natural as well as rhizosphere and bulk soil samples were highly similar in bacterial diversity and species richness. Significant differences were detected in bacterial community structures and co-occurrence patterns between the wet and dry seasons. The results of this study improved our knowledge on what effect commercial Cyclopia plantations and seasonal changes can have on soil bacterial communities within the endemic fynbos biome.

Description: In the eastern United States, American chestnut ( Castanea dentata ) was historically a major component of forest communities, but was functionally extirpated in the early 20th century by an introduced pathogen, chestnut blight ( Cryphonectria parasitica ). Because chestnut is fast-growing, long-lived, and resistant to decay, restoration of American chestnut using blight-resistant stock could have the potential to increase carbon sequestration or storage in forested landscapes. However, carbon dynamics are also affected by interspecific competition, succession, natural disturbance, and forest management activities, and it is unknown how chestnut restoration might interact with these other processes. We used the PnET-Succession extension of the LANDIS-II forest landscape model to study the implications of chestnut restoration on forest composition and carbon storage in the context of other disturbances, including timber harvest and insect pest outbreaks. Our results imply that it could take a millennium or more for chestnut to fully occupy landscapes without aggressive restoration efforts. When successful, chestnut restoration activities displaced other species approximately in proportion to their abundance on the landscape, rather than replacing a single species or genus (e.g., Quercus ). Insect pests increased the rate of chestnut colonization by reducing the abundance of competitors, and also had a dominant effect on carbon dynamics. Although chestnut is fast-growing, moderately shade-tolerant, and decomposes very slowly, our results suggest that it can only modestly increase the carbon storage potential of eastern forests. However, our results also demonstrate that compositional changes in forest communities can have noticeable effects on biomass accumulation, even with the large uncertainties introduced by invasive pests.

Description: Herbivory and competition during the regeneration phase influence forest successional dynamics. We demonstrated the importance of using the Target Plant Concept to identify and overcome site limiting factors for subtropical maritime forest restoration associated with deer browsing and competition. Quercus virginiana Mill. (live oak) bareroot seedlings were planted into clearcuts along the US Southern Atlantic coast with different treatment combinations of herbivory control (fenced or non-fenced) against white-tailed deer (Odocoileus virginianus Zimm.) browsing and competing vegetation removal (none, one-year, or two-years). After three growing seasons, mean seedling survival was 61% with no significant treatment differences. Control of browse and vegetation interacted to facilitate growth of live oak; seedlings were significantly larger for all response parameters (diameter, height, crown width) when fenced and treated with vegetation control. Removal of vegetation improved seedling performance only in fenced plots, however, indicating a shift in pressure from herbivory to competition as the most limiting site factor when deer were excluded. After the second growing season, foliar nitrogen was greater in fenced plots than non-fenced plots and greater in two-year vegetation control subplots than non-vegetation control subplots. This result, however, was absent after the third growing season. Three years after clearcutting, there was no evidence of Q. virginiana natural regeneration in non-fenced plots. Even with artificial regeneration in non-fenced plots, Q. virginiana growth was slow, indicating that herbivory was a key limiting factor. Our findings illustrate the importance of accounting for site limiting factors and may aid in developing management prescriptions to promote semi-evergreen oak regeneration in ecosystems with high pressure from herbivory and competing vegetation.