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  • American Institute of Physics (AIP)  (10)
  • Blackwell Publishing Ltd
  • 2015-2019  (10)
  • 1
    Publication Date: 2016-06-15
    Description: Experimental procedure and setup for obtaining X-ray fluorescence hologram of crystalline metalloprotein samples are described. Human hemoglobin, an α 2 β 2 tetrameric metalloprotein containing the Fe(II) heme active-site in each chain, was chosen for this study because of its wealth of crystallographic data. A cold gas flow system was introduced to reduce X-ray radiation damage of protein crystals that are usually fragile and susceptible to damage. A χ-stage was installed to rotate the sample while avoiding intersection between the X-ray beam and the sample loop or holder, which is needed for supporting fragile protein crystals. Huge hemoglobin crystals (with a maximum size of 8 × 6 × 3 mm 3 ) were prepared and used to keep the footprint of the incident X-ray beam smaller than the sample size during the entire course of the measurement with the incident angle of 0°-70°. Under these experimental and data acquisition conditions, we achieved the first observation of the X-ray fluorescence hologram pattern from the protein crystals with minimal radiation damage, opening up a new and potential method for investigating the stereochemistry of the metal active-sites in biomacromolecules.
    Print ISSN: 0034-6748
    Electronic ISSN: 1089-7623
    Topics: Electrical Engineering, Measurement and Control Technology , Physics
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  • 2
    Publication Date: 2016-09-20
    Description: Li-ion batteries have been recognized as promising devices for a sustainable society. Layered LiCoO 2 and graphite are commonly used as electrode materials for Li-ion batteries. When charging and discharging, Li-ions are extracted or inserted into the interlayers, which causes changes in volume. Scanning probe microscopy (SPM) can allow high resolution imaging of these volume changes, which enables us to investigate Li-ion migration without destruction. We observed volume changes in the LiCoO 2 cathode using SPM and successfully imaged the distribution of the volume changes corresponding to the LiCoO 2 particles. Volume changes in the interspace were significantly larger than those in the particles. The large volume changes are caused by electrolyte flux induced by changes in concentration of Li ions. The volume changes were greatly reduced when the electrolyte dried out. The dry-out and infiltration of electrolyte between the LiCoO 2 particles and the current collector spread out with the procedure of degradation of the batteries. The boundaries between the dry-out and infiltration regions acted as barriers of electrolyte flux.
    Print ISSN: 0021-9606
    Electronic ISSN: 1089-7690
    Topics: Chemistry and Pharmacology , Physics
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  • 3
    Publication Date: 2016-09-01
    Description: We investigated the crystallographic structure of FePS 3 with a layered structure using transmission electron microscopy and powder X-ray diffraction. We found that FePS 3 forms a rotational twin structure with the common axis along the c *-axis. The high-resolution transmission electron microscopy images revealed that the twin boundaries were positioned at the van der Waals gaps between the layers. The narrow bands of dark contrast were observed in the bright-field transmission electron microscopy images below the antiferromagnetic transition temperature, T N  ≈ 120 K. Low-temperature X-ray diffraction showed a lattice distortion; the a - and b -axes shortened and lengthened, respectively, as the temperature decreased below T N. We propose that the narrow bands of dark contrast observed in the bright-field transmission electron microscopy images are caused by the directional lattice distortion with respect to each micro-twin variant in the antiferromagnetic phase.
    Print ISSN: 0021-8979
    Electronic ISSN: 1089-7550
    Topics: Physics
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  • 4
    Publication Date: 2015-04-14
    Description: A zero thermal expansion in a wide temperature range including room temperature has been achieved in a cubic perovskite oxide SrCu 3 Fe 4− x Mn x O 12 for x  = 1.5. Partial substitution of Mn for Fe in SrCu 3 Fe 4 O 12 systematically changes the linear thermal expansion coefficient from negative [−6.4(2), −5.7(5), and −1.88(11) ppm/K for x  = 0.5, 1, and 1.25, respectively] to almost zero [0.67(15) ppm/K for x  = 1.5] to positive [2.97(17) ppm/K for x  = 1.75] and the operational temperature window shifts to higher temperature ranges above room temperature. Crystal structure analysis and Mössbauer spectroscopy reveal that the zero thermal expansion for x  = 1.5 composition is induced by intermetallic charge transfer between Cu and (Fe,Mn) ions. These results display the high potential of SrCu 3 Fe 4− x Mn x O 12 for the development of zero thermal expansion materials.
    Print ISSN: 0003-6951
    Electronic ISSN: 1077-3118
    Topics: Physics
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  • 5
    Publication Date: 2015-01-31
    Description: The second virial coefficient, A 2 , for trivial-ring polymers in dilute condition was estimated from a Metropolis Monte Carlo (MC) simulation, and the temperature dependence of A 2 has been discussed with their Flory’s scaling exponent, ν , in R g ∝ N ν , where R g is radius of gyration of a polymer molecule. A limited but not too small number of polymer molecules were employed in the simulation, and the A 2 values at various temperatures were calculated from the molecular density fluctuation in the solution. In the simulation, the topology of ring polymers was kept, since chain crossing was prohibited. The excluded volume effects can be screened by the attractive force between segments, which depends on the temperature, T α , defined in the Metropolis MC method. Linear and trivial-ring polymers have the ν value of 1/2 at T α = 10.605 and 10.504. At T α = 10.504, the excluded volume effects are screened by the attractive force generated between segments in a ring polymer, but the A 2 value for ring polymers is positive. Thus, the temperature at A 2 = 0 for a ring polymer is lower than that at ν = 1/2, and this fact can be explained with the following two reasons. (a) R g value for a ring polymer is much smaller than that for a linear polymer at the same temperature and molecular weight, where interpenetration of a ring polymer chain into neighboring chains is apparently less than a linear chain. (b) The conformation of trivial rings can be statistically described as a closed random walk at ν = 1/2, but their topologies are kept, being produced topological constraints, which strongly relate not only to the long-distance interaction between segments in a molecule but also the inter-molecular interaction.
    Print ISSN: 0021-9606
    Electronic ISSN: 1089-7690
    Topics: Chemistry and Pharmacology , Physics
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  • 6
    Publication Date: 2015-12-02
    Description: We studied the lattice constants, surface-phonon dispersion curves, spectral densities, and displacement vectors of the hydrogen-terminated Si(110)-(1 × 1) [H:Si(110)-(1 × 1)] surface using the first-principles calculations within the framework of density functional theory (DFT). The symmetry of the H:Si(110)-(1 × 1) surface belongs to the two-dimensional space group p 2 mg , which has two highly symmetric and orthogonal directions, Γ X ¯ and Γ X ′ ¯ , with the glide planes along the Γ X ¯ direction. Because glide symmetry separates the even and odd surface phonon modes, we mapped the even surface modes in the first surface Brillouin zone (SBZ) and the odd surface modes in the second SBZ using the spectral densities and displacement vectors. The surface phonon modes were analyzed with respect to their physical origin, spatial localization properties, polarization, and the charge density of their electronic states. Our calculated surface phonon modes were in good agreement with recent high-resolution electron-energy-loss spectroscopy data in the first and second SBZs of the Γ X ¯ direction. In the SBZ of the Γ X ′ ¯ direction, our calculated surface phonon modes agree well with the data in the energy region below 65 meV but are not satisfactorily compatible with those in the stretching and bending modes. In addition, we discuss the microscopic nature of the surface phonon dispersion of the H:Si(110)-(1 × 1) surface using the phonon eigen modes.
    Print ISSN: 0021-9606
    Electronic ISSN: 1089-7690
    Topics: Chemistry and Pharmacology , Physics
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  • 7
    Publication Date: 2015-08-25
    Description: Epitaxial growth of ε-Ga 2 O 3 is demonstrated for the first time. The ε-Ga 2 O 3 films are grown on GaN (0001), AlN (0001), and β-Ga 2 O 3 ( 2 ¯ 01 ) by halide vapor phase epitaxy at 550 °C using gallium chloride and O 2 as precursors. X-ray ω-2θ and pole figure measurements prove that phase-pure ε-Ga 2 O 3 (0001) films are epitaxially grown on the three kinds of substrates, although some minor misoriented domains are observed. High temperature X-ray diffraction measurements reveal that the ε-Ga 2 O 3 is thermally stable up to approximately 700 °C. The optical bandgap of ε-Ga 2 O 3 is determined for the first time to be 4.9 eV.
    Print ISSN: 0021-8979
    Electronic ISSN: 1089-7550
    Topics: Physics
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  • 8
    Publication Date: 2015-03-18
    Description: Single crystals of La(O,F)BiSSe were grown by using a CsCl flux method. Single crystal X-ray structural analysis reveals that the crystal structure is isostructural to the BiS 2 - or BiSe 2 -based compounds crystallizing with space group P4/nmm (lattice parameters a  = 4.1110(2) Å, c  = 13.6010(7) Å). However, the S atoms are selectively occupied at the apical site of the Bi-SSe pyramids in the superconducting layer. The single crystals show a superconducting transition at around 4.2 K in the magnetic susceptibility and resistivity measurements. The superconducting anisotropic parameter is determined to be 34–35 from its upper critical magnetic field. The anisotropy is in the same range with that of other members of the La(O,F)Bi Ch 2 ( Ch  = S, Se) family under ambient pressure.
    Print ISSN: 0003-6951
    Electronic ISSN: 1077-3118
    Topics: Physics
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  • 9
    Publication Date: 2015-03-17
    Description: We show that our real-space finite-difference scheme allows us to perform density-functional calculations for nanometer-scale targets containing more than 100 000 atoms. This real-space scheme is applied to twisted bilayer graphene, clarifying that Moiré pattern induced in the slightly twisted bilayer graphene drastically modifies the atomic and electronic structures.
    Print ISSN: 0021-8979
    Electronic ISSN: 1089-7550
    Topics: Physics
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  • 10
    Publication Date: 2015-02-10
    Description: Superlattice films with full-Heusler Co 2 MnSi (CMS) alloy and Pd layers prepared on Pd-buffered MgO(001), (110), and (111) substrates were investigated. Crystal orientation and epitaxial relationship of Pd and CMS layers were analyzed from x-ray diffraction, pole figure measurements, and transmission electron microscope observation. Formation of the L 2 1 -ordered structure in the CMS layers was confirmed by observation of CMS(111) diffraction. Perpendicular magnetic anisotropy (PMA) was obtained in the [CMS (0.6 nm)/Pd (2 nm)] 6 superlattice film formed using MgO(111) substrates although other superlattice films prepared using MgO(001) and (110) substrates showed in-plane and isotropic magnetic anisotropy, respectively. The perpendicular magnetic anisotropy energy constant K for the superlattice films prepared using MgO(111) substrate was estimated to be 2.3 Mergs/cm 3 , and an interfacial anisotropy constant K i per one CMS-Pd interface in the superlattice films was estimated to be 0.16 ergs/cm 2 . K i in superlattice films with various crystal orientations showed positive values, indicating that Pd/CMS interfaces had an ability to induce PMA regardless of their crystal orientation.
    Print ISSN: 0003-6951
    Electronic ISSN: 1077-3118
    Topics: Physics
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