ALBERT

Note: Contents 1 Research and Open Questions—A Modern Concept Behind Berlins T.rex Presentation of Tristan Otto / Uwe Moldrzyk and Linda Gallé 2 Scientific Methods of Geological and Paleontological Collections and Trends in Paleontological Investigation and Research / Cathrin Hühne 3 BAMBERG: The Paleontological Collection at the Museum of Natural History in Bamberg (NKMB) / Matthias Mäuser 4 BASEL: The Natural History Museum Basel (NMB) / Walter Etter, Michael Knappertsbusch, and Loïc Costeur 5 BERLIN: The Palaeontological Collections of the Museum für Naturkunde Berlin / Christian Neumann, Stephan Schultka, and Florian Witzmann 6 BERN: The Natural History Museum — An Institution of the Burgergemeinde of Bern / Ursula Menkveld-Gfeller 7 BIELEFELD: Not Worth Mentioning? Paleontological Collections of Small Museums: The Example of Bielefeld (North Rhine Westphalia, Germany) / Mark Keiter and Sven Sachs 8 BILZINGSLEBEN: The Bilzingsleben Collection / Clemens Pasda 9 The Paleontological Collection of the State Museum of Natural History (SNHM) in Braunschweig, Germany / Ralf Kosma 10 BREMEN: The Paleontological Research Collection of the Geosciences Collection of the University of Bremen / Jens Lehmann 11 CHEMNITZ: Back to the Roots of Palaeobotany—Chemnitz and its Palaeontological Collection / Ronny Rößler and Thorid Zierold 12 COBURG: Naturkunde-Museum Coburg—Paleontological Collections / Eckhard Mönnig 13 COTTBUS: Museum of Natural History and Environment in Cottbus / Rolf Striegler and Ursula Striegler 14 DARMSTADT: The Paleontological Collections of Hessisches Landesmuseum Darmstadt / Gabriele Gruber, Oliver Sandrock, and Torsten Wappler 15 DESSAU-ROSSLAU: Museum of Natural History and Prehistory—Paleontological Collection / Angelika Hesse 16 DORTMUND: Museum für Naturkunde der Stadt Dortmund / Jan-Michael Ilger and Oliver Adrian 17 DOTTERNHAUSEN: The Jurassic World of the Swabian Alb Region (South Germany): The Fossil Collection of the Werkforum and Fossil Museum of Dotternhausen / Annette Schmid-Röhl 18 EICHSTÄTT: The Jura-Museum Eichstätt / Martina Kölbl-Ebert 19 ERLANGEN: The Erlangen Paleobiology Collections / Wolfgang Kiessling, Michael Heinze, and Cristina Krause 20 ESSEN: Ruhr Museum—Geological Collection / Ulrike Stottrop, Udo Scheer, and Esther Guderley 21 FRANKFURT/DRESDEN/GÖRLITZ: Palaeontological collections of the Senckenberg Gesellschaft für Naturforschung / Dieter Uhl, Lutz Kunzmann, Christine Hertler, Ralf-Dietrich Kahlke, John-Albrecht Keiler, Peter Königshof, Ottmar Kullmer, Stephan Schaal, Krister Smith, Mónica M. Sólorzano Kraemer, Martina Stebich, Olaf Tietz, and Markus Wilmsen 22 FRICK: Late Triassic Basal Sauropodomorph and Theropod Dinosaurs at the Sauriermuseum Frick, Switzerland / Andrea B. Oettl-Rieser and Marion Zahner 23 GOTHA: Museum der Natur, Stiftung Schloss Friedenstein Gotha / Oliver Wings and Carsten Eckert 24 GÖTTINGEN: The Palaeontological Collections of the Geoscience Museum at the Georg-August University in Göttingen / Alexander Gehler, Mike Reich, and Joachim Reitner 25 HALLE: The Geiseltal Collection of Martin Luther University, Halle-Wittenberg / Frank D. Steinheimer and Alexander K. Hastings 26 HALLE: The Palaeontological Collection of the Martin Luther University Halle-Wittenberg in Halle (Saale) / Norbert Hauschke 27 HAMBURG: Palaeontological Collections of the Center of Natural History, Universität Hamburg / Ulrich Kotthoff and Jochen Schlüter 28 HANNOVER/BERLIN: The Geoscientific Collections of the Federal Institute for Geosciences and Natural Resources and the State Authority for Mining, Energy and Geology in Hannover and Berlin / Angela Ehling and Carmen Heunisch 29 HANNOVER: Niedersächsisches Landesmuseum Hannover—Lower Saxony State Museum Hannover / Annette Richter and Annina Böhme 30 HILDESHEIM: Roemer- and Pelizaeus-Museum / Jürgen Vespermann 31 HOLZMADEN: Prehistoric Museum Hauff—A Fossil Museum Since 4 Generations—(Urweltmuseum Hauff) / Rolf Bernhard Hauff and Ulrich Joger 32 INGELFINGEN: Muschelkalkmuseum Hagdorn Stadt Ingelfingen / Hans Hagdorn 33 JENA: The Palaeontological Collections at the Phyletisches Museum in Jena / Dietrich von Knorre and Rolf G. Beutel 34 MAUER: The Locality of Mauer and its Virtual Collection of Middle Pleistocene Mammal Fossils / H. Dieter Schreiber, Kristina Eck, and Volker Liebig 35 KÖLN: Geological Collections of the University of Cologne (GCC) (Geological and Palaeontological Collections of the Institute of Geology and Mineralogy, University of Cologne) / Michael R. W. Amler and Hans-Georg Herbig 36 KREFELD: Palaeobotanical and Palynological Collection at the Geological Survey North Rhine-Westphalia / Christoph Hartkopf-Fröder 37 LINZ: The Paleontological Collection of the Upper Austrian State Museum, Linz / Björn Berning 38 LÜBECK: Museum of Nature and Environment, Paleontological Collections / Susanne Füting 39 MAINZ: Paleontological Collections of the University of Mainz (Geoscientific Collections) / Kirsten I. Grimm and Bernd R. Schöne 40 MAINZ: Palaeontological Collections of the Landesamt für Geologie Und Bergbau Rheinland-Pfalz (Rhineland-Palatinate, Germany) / Jürgen Gad, Winfried Kuhn, and Peter Schäfer 41 The Reiss-Engelhorn-Museen / Doris Döppes and Wilfried Rosendahl 42 MARBURG: GeoArchive Marburg (Geological and Palaeontological Collections of the Former Faculty of Geosciences, Philipps University of Marburg) / Michael R. W. Amler, Günter Kauffmann, and Dieter Uhl 43 MÜNCHEN: The Fossil Collections of the Bavarian State Collections at Munich / Mike Reich and Gert Wörheide 44 MÜNSTER: Geomuseum of the WWU / Markus Bertling 45 NIERSTEIN: Paläontologisches Museum Nierstein / Lutz Kaecke 46 SCHIFFWEILER (Landsweiler-Reden): Center for Biological Documentation (Zentrum für Biodokumention—ZfBS) / Edgar Müller 47 SCHLEUSINGEN: Naturhistorisches Museum Schloss Bertholdsburg Schleusingen (Thuringia, Germany)—Home of Permian and Triassic Fossils / Ralf Werneburg 48 SIEGSDORF: The Siegsdorf Natural History and Mammoth Museum / Robert Darga 49 ST. GALLEN: Naturmuseum St. Gallen / Toni Bürgin 50 Staatliches Museum für Naturkunde Stuttgart (SMNS) / Rainer Schoch and Johanna Kovar-Eder 51 THALLICHTENBERG: POLLICHIA Geoscience Collections at the Urweltmuseum GEOSKOP, Thallichtenberg (Germany) / Sebastian Voigt and Jan Fischer 52 TÜBINGEN: The Palaeontologial Collection of Tübingen / Ingmar Werneburg and Madelaine Böhme 53 WIEN: “To the Realm of Nature and its Exploration”: The Paleontological Collections of the Natural History Museum Vienna / Mathias Harzhauser and Andreas Kroh 54 WIESBADEN: Museum Wiesbaden, Natural History Collections / Fritz Geller-Grimm 55 ZURICH: The Geological-Palaeontological Collection at ETH Zurich / Andreas D. Mueller, Rodney Eastwood, and Stefan Ungricht 56 ZURICH: Palaeontological Museum of the University of Zurich / Christian Klug and Beat Scheffold 57 State Museum of Natural History Karlsruhe: Institute of Life and Earth Sciences / Eberhard Frey and H. Dieter Schreiber Index

Note: Contents 1 Introduction References Part I Molecular Stress Physiology 2 General Themes of Molecular Stress Physiology 2.1 Definitions and Concepts 2.1.1 Stress 2.1.2 Quantification of Stress 2.1.3 Escape–Resistance–Avoidance–Tolerance 2.1.4 Stress Responses–Acclimation–Adaptation 2.1.5 Filters Determining Species Distribution 2.2 Activation of Stress Tolerance and Avoidance Mechanisms 2.2.1 Stress Sensing and Signal Transduction 2.2.2 Transcriptional Control 2.2.3 Oxidative Stress 2.2.4 Long-Distance Stress Signalling 2.2.5 The Model System Arabidopsis thaliana 2.3 Stress and Growth Regulation 2.4 Molecular Basis of Escape and Anticipation of Stress 2.4.1 Circadian Rhythms 2.4.2 Anticipation of Seasonal Changes in Environmental Conditions 2.4.3 Developmental Switches Triggered by Favourable Conditions 2.4.4 Trans-Generational Stress Memory Summary References 3 Light 3.1 The Dual Significance of Light 3.2 Visible Light 3.2.1 Avoidance of Light Stress and Permanent or Dynamic Acclimation 3.2.2 Overexcitation and Damage to Photosynthetic Membranes. 3.2.3 Flexible Acclimation to Changes in Light Intensity 3.2.4 Continuous Light 3.2.5 Light Triggers Plant Adaptation and Acclimation to the Environment 3.3 UV-B Radiation 3.3.1 Ranges of Ultraviolet Radiation and Biological Activity 3.3.2 Ultraviolet-B Damage and Repair Mechanisms 3.3.3 Avoidance of Ultraviolet-B-Induced Stress 3.3.4 Ultraviolet-B Perception and Signalling 3.3.5 Crosstalk Between Ultraviolet-B and Visible Light Responses Summary References 4 Temperature 4.1 The Temperature Challenge 4.1.1 Temperature Dependence of Life 4.1.2 Plants as Poikilothermic Organisms 4.1.3 Variations in Temperature Range 4.1.4 Strategies to Cope with Temperature Fluctuations and Temperature Extremes 4.2 Cold Acclimation and Freezing Tolerance 4.2.1 Adjustment of Membrane Fluidity 4.2.2 Prevention of Photoinhibition 4.2.3 Cryoprotective Proteins 4.2.4 Control of Ice Formation 4.2.5 Signalling Networks Involved in Cold Acclimation 4.2.6 Freezing Avoidance and Freezing Tolerance in Tropical High Mountain Plants 4.3 Heat Stress 4.3.1 Heat Stress Avoidance 4.3.2 Acquired Thermotolerance 4.3.3 The Heat Shock Response 4.4 Temperature Sensing 4.4.1 Sensing of Extreme Temperatures 4.4.2 Sensing of Ambient Temperature Changes Summary References 5 Oxygen Deficiency 5.1 Conditions of Flooded Soil 5.2 Hypoxia-Induced Damage: Energy Metabolism of Plants Under Oxygen Deficiency 5.3 Natural Variation in the Ability to Endure Inundation by Water 5.4 Adaptations to Flooding-Prone Habitats 5.4.1 Anatomical–Morphological Adaptations and Modifications 5.4.2 Biochemical Modifications 5.5 Sensing of Flooding and Ensuing Signal Transduction 5.5.1 Ethylene Signal Transduction 5.5.2 Oxygen Sensing 5.6 Regulation of Avoidance and Tolerance Strategies Summary References 6 Water Deficiency (Drought) 6.1 The Properties of Water 6.2 Water Acquisition and Movement: Cellular Aspects 6.2.1 The Water Potential 6.2.2 Facilitation of Intercellular and Intracellular Water Flow: Aquaporins 6.3 Drought Stress Responses: Avoidance and Tolerance 6.3.1 Control of the Osmotic Potential 6.3.2 Protective Proteins 6.3.3 Regulation of the Stomatal Aperture 6.4 Acclimation of Growth 6.4.1 Inhibition of Shoot Growth 6.4.2 Stimulation of Root Growth 6.5 Sensing of Water Status and Signal Transduction 6.5.1 Sensing of Water Status 6.5.2 ABA Signal Transduction 6.5.3 ABA-Independent Signalling 6.6 Photosynthesis Variants with Improved Water Use Efficiency 6.6.1 C4 Photosynthesis 6.6.2 Evolution of C 4 Photosynthesis 6.6.3 Crassulacean Acid Metabolism 6.6.4 Evolution of Crassulacean Acid Metabolism Photosynthesis Summary References 7 Adverse Soil Mineral Availability 7.1 Mineral Nutrients 7.2 The Mineral Nutrition Challenge 7.2.1 Elements in the Soil 7.2.2 Element Toxicity 7.3 Nutrient Acquisition and Responses to Nutrient Scarcity 7.3.1 Modulation of Nutrient Availability 7.3.2 Cellular Ion Transport Mechanisms 7.3.3 Modulation of Nutrient Uptake in Response to Deficiency 7.3.4 Intracellular Transport and Cellular Aspects of Long-Distance Transport 7.3.5 Plasticity of Root Architecture and Responses to Nutrient Deficiency 7.3.6 Sensing of Nutrient Availability and Nutrient Status . 7.4 Nutrient Acquisition Symbioses 7.4.1 Mycorrhizae 7.4.2 Nitrogen Fixation 7.4.3 The Common Sym Pathway 7.5 Responses to Element Toxicity and Tolerance Mechanisms 7.5.1 Essential Metal Toxicity and Tolerance 7.5.2 Metal Hyperaccumulators as Models for Adaptation to Extreme Environments 7.5.3 Sodium Toxicity 7.5.4 Aluminium Toxicity and Tolerance 7.5.5 Non-Essential Toxic Metals Summary References 8 Biotic Stress 8.1 Plant Disease Caused by Pathogens 8.1.1 Types of Pathogens: Viruses, Bacteria, Fungi, Oomycetes and Nematodes 8.1.2 Pathogenicity Mechanisms 8.2 Plant Defences Against Microbial Pathogens and Viruses 8.2.1 Preformed Defences Against Bacteria, Fungi and Oomycetes 8.2.2 Inducible Local Defences 8.2.3 Inducible Systemic Resistance 8.2.4 Defence Against Viruses via Gene Silencing 8.3 Herbivory 8.3.1 Constitutive Defences 8.3.2 Inducible Defences Against Herbivores 8.3.3 How Plant–Herbivore Interactions Drive Genetic Diversity 8.4 Parasitic Plants 8.5 Allelopathy Summary References Part II Physiological and Biophysical Plant Ecology 9 Thermal Balance of Plants and Plant Communities 9.1 Energy Balance of the Atmospheric Boundary Layer 9.2 Microclimate Near the Ground Surface 9.2.1 Daily Changes in Temperature Near the Ground 9.2.2 Modification of Environmental Radiation and Temperature by Abiotic Factors 9.2.3 Modification of the Radiation Budget and Temperature by Biotic Factors 9.3 Energy Balance of Leaves 9.4 Acclimation and Adaptation to Temperature Extremes 9.4.1 Acclimation and Adaptation to High Temperatures 9.4.2 Acclimation and Adaptation to Low Temperatures Summary References 10 Water Relations 10.1 Water as an Environmental Factor 10.1.1 Water Use by Plants and Animals 10.1.2 Availability of Water on Earth 10.1.3 Drivers of Water Flow Between the Soil and the Atmosphere 10.2 Water Transport from the Soil to the Plant 10.2.1 Water Uptake 10.2.2 Xylem Water Transport 10.2.3 Phloem Water Transport 10.3 Transpiration 10.3.1 Stomatal Responses to Plant-Internal Factors 10.3.2 Stomatal Responses to Environmental Factors Summary References 11 Nutrient Relations 11.1 Availability of Soil Nutrients and Ion Use 11.1.1 Plant Nutrients 11.1.2 Availability of Nutrients in Soil 11.1.3 General Aspects of Plant Nutrition 11.1.4 Nutrient Deficiency and Excess 11.2 Nitrogen Nutrition 11.2.1 Nitrogen in Plant Metabolism 11.2.2 Nitrogen Uptake and Nutrition 11.2.3 Nitrogen Requirements for Growth 11.2.4 Nitrogen Storage 11.2.5 Insectivorous Plants 11.2.6 Nitrogen Deficiency and Excess 11.3 Sulphur Nutrition 11.3.1 Sulphur in Plant Metabolism 11.3.2 Sulphur Uptake and Plant Requirements 11.3.3 Indicators of Sulphur Deficiency and Excess 11.4 Phosphate Nutrition 11.4.1 Phosphorus in Plant Metabolism 11.4.2 Phosphate Uptake and Plant Requirements 11.4.3 Indicators of Phosphorus Deficiency and Excess 11.5 Alkaline Cation Nutrition 11.5.1 Magnesium 11.5.2 Calcium 11.5.3 Potassium Summary References 12 Carbon Relations 12.1 Photosynthetic CO2 Uptake: Physiological and Physical Basis 12.1.1 Photosynthesis as a Diffusion Process 12.1.2 Evolution of C 3, C4 and Crassulacean Acid Metabolism Plant Species 12.2 Photosynthesis Models and Calculation of 13C/12C Fluxes (Contribution by A. Arneth) 12.2.1 RubisCO-Limited or RuBP-Saturated Rate (Av) 12.2.2 RuBP Regeneration–Dependent and Electron Transport–Limiting Rate (Aj) 12.2.3 Supply of CO 2 Through Stomata 12.2.4 13C/12C Discrimination 12.3 Specific Leaf Area, Nitrogen Concentrations and Photosynthetic Capacity 12.3.1 Specific Leaf Area 12.3.2 Maximum Rates of CO2 Assimilation 12.4 Response of Photosynthesis to Environmental Variables 12.4.1 Light Response of CO 2 Assimilation 12.4.2 Temperature Response of CO2 Assimilation 12.4.3 Relative Air Humidi