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  • 2020-2024  (10)
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  • 1
    Publication Date: 2024-01-06
    Description: A global compilation of in situ data is vital to evaluate the quality of ocean-colour satellite data records. Here, we describe data compiled for the validation of ocean-colour products from the ESA Ocean Colour Climate Change Initiative (OC-CCI). The data were acquired from several sources (including, inter alia, MOBY, BOUSSOLE, AERONET-OC, SeaBASS, NOMAD, MERMAID, AMT, ICES, HOT, GeP&CO) and span the period from 1997 to 2021. Observations of the following variables were compiled: spectral remote-sensing reflectance, concentration of chlorophyll-a, spectral inherent optical properties, spectral diffuse attenuation coefficient and total suspended matter. The data were obtained from multi-project archives acquired via open internet services, or from individual projects, acquired directly from data providers. Methodologies were implemented for homogenisation, quality control and merging of all data. No changes were made to the original data, other than averaging of observations that were close in time and space, elimination of some points after quality control and conversion to a standard format. The result is a merged table available in text format. Metadata of each in situ measurement (original source, cruise or experiment, principal investigator) were propagated throughout the work and made available in the final table. By making the metadata available, provenance is better documented, and it is also possible to analyse each set of data separately. This paper also describes the changes that were made to the compilation in relation to the previous version.
    Keywords: Bio-optical in-situ data; ESA_OC-CCI; Ocean Colour; Ocean Colour multi-mission algorithm prototype system; OMAPS; remote sensing
    Type: Dataset
    Format: application/zip, 7 datasets
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  • 2
    Publication Date: 2024-01-06
    Keywords: Bio-optical in-situ data; Chlorophyll a, fluorometric or spectrophotometric determination; Chlorophyll a as carbon; Comment; DATE/TIME; DEPTH, water; ESA_OC-CCI; High Performance Liquid Chromatography (HPLC); Identification; LATITUDE; LONGITUDE; Ocean Colour; Ocean Colour multi-mission algorithm prototype system; OMAPS; Quality flag, chlorophyll; Quality flag, time; remote sensing
    Type: Dataset
    Format: text/tab-separated-values, 444442 data points
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  • 3
    Publication Date: 2024-01-06
    Keywords: Absorption coefficient, colored dissolved organic matter at given wavelength; Algal pigment absorption coefficient at given wavelength; Backscattering coefficient of particles at given wavelength; Bio-optical in-situ data; Comment; DATE/TIME; DEPTH, water; ESA_OC-CCI; Identification; Irradiance coefficient, diffuse downwelling at given wavelength; LATITUDE; LONGITUDE; Ocean Colour; Ocean Colour multi-mission algorithm prototype system; OMAPS; Quality flag, time; remote sensing; Suspended matter, total; Wavelength
    Type: Dataset
    Format: text/tab-separated-values, 744392 data points
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  • 4
    Publication Date: 2024-01-06
    Keywords: Absorption coefficient, colored dissolved organic matter at given wavelength; Algal pigment absorption coefficient at given wavelength; Backscattering coefficient of particles at given wavelength; Bio-optical in-situ data; Comment; DATE/TIME; DEPTH, water; ESA_OC-CCI; Identification; Irradiance coefficient, diffuse downwelling at given wavelength; LATITUDE; LONGITUDE; Ocean Colour; Ocean Colour multi-mission algorithm prototype system; OMAPS; Quality flag, time; remote sensing; Suspended matter, total; Wavelength
    Type: Dataset
    Format: text/tab-separated-values, 842650 data points
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  • 5
    Publication Date: 2024-01-06
    Keywords: Absorption coefficient, colored dissolved organic matter at given wavelength; Algal pigment absorption coefficient at given wavelength; Backscattering coefficient of particles at given wavelength; Bio-optical in-situ data; Comment; DATE/TIME; DEPTH, water; ESA_OC-CCI; Identification; Irradiance coefficient, diffuse downwelling at given wavelength; LATITUDE; LONGITUDE; Ocean Colour; Ocean Colour multi-mission algorithm prototype system; OMAPS; Quality flag, time; remote sensing; Suspended matter, total
    Type: Dataset
    Format: text/tab-separated-values, 640449 data points
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  • 6
    Publication Date: 2024-02-14
    Description: This data set composes a large amount of quality controlled in situ measurements of major pigments based on HPLC collected from various expeditions across the Atlantic Ocean spanning from 71°S to 84°N, including 11 expeditions with RV Polarstern from the North Atlantic to the Arctic Fram Strait: PS74, PSS76, PS78, PS80, PS85, PS93.2 (https://doi.org/10.1594/PANGAEA.894872), PS99.1 (https://doi.org/10.1594/PANGAEA.905502), PS99.2 ( https://doi.org/10.1594/PANGAEA.894874), PS106 (https://doi.org/10.1594/PANGAEA.899284), PS107 (https://doi.org/10.1594/PANGAEA.894860), PS121 (https://doi.org/10.1594/PANGAEA.941011), four expeditions (two with RV Polarstern and two Atlantic Meridional Transect expeditions with RRS James Clark Ross and RRS Discovery) in the trans-Atlantic Ocean: PS113 ( https://doi.org/10.1594/PANGAEA.911061), PS120, AMT28 and AMT29, and one expedition with RV Polarstern in the Southern Ocean: PS103 (https://doi.org/10.1594/PANGAEA.898941). Chlorophyll a concentration (Chl-a) of six phytoplankton functions groups (PFTs) derived from these pigments have been also included. This published data set has contributed to validate satellite PFT products available on the EU funded Copernicus Marine Service (CMEMS, https://marine.copernicus.eu/), which are derived from multi-sensor ocean colour reflectance data and sea surface temperature using an empirical orthogonal function based approach (Xi et al. 2020; 2021). Description on in situ PFT Chl-a determination from pigment data: PFT Chl-a in this data set were derived using an updated diagnostic pigment analysis (DPA) method (Soppa et al., 2014; Losa et al., 2017) with retuned coefficients by Alvarado et al (2021), that was originally developed by Vidussi et al. (2001), adapted in Uitz et al. (2006) and further refined by Hirata et al. (2011) and Brewin et al. (2015). The values of retuned DPA weighting coefficients for PFT Chl-a determination are: 1.56 for fucoxanthin, 1.53 for peridinin, 0.89 for 19'-hexanoyloxyfucoxanthin, 0.44 for 19'-butanoyloxyfucoxanthin, 1.94 for alloxanthin, 2.63 for total chlorophyll b, and 0.99 for zeaxanthin. The coefficient retuning was based on an updated global HPLC pigment data base for the open ocean (water depth 〉200 m), which was compiled based on the previously published data sets spanning from 1988 to 2012 described in Losa et al. (2017), with updates in Xi et al. (2021) and Álvarez et al. (2022), by adding other newly available HPLC pigment data collected between 2012 and 2018 mainly from SeaBASS (https://seabass.gsfc.nasa.gov/), PANGAEA, British Oceanographic Data Centre (BODC, https://www.bodc.ac.uk/), and Australian Open Access to Ocean Data (AODN, https://portal.aodn.org.au/) (as of February 2020, see Table 1 attached in the 'Additional metadata' for more details on the data sources).
    Keywords: 19-Butanoyloxyfucoxanthin; 19-Hexanoyloxyfucoxanthin; AC3; Alloxanthin; AMT28; AMT28_10-33; AMT28_1-1; AMT28_11-36; AMT28_12-41; AMT28_13-44; AMT28_14-48; AMT28_15-50; AMT28_16-57; AMT28_17-58; AMT28_18-64; AMT28_19-66; AMT28_20-71; AMT28_21-73; AMT28_22-78; AMT28_23-80; AMT28_2-4; AMT28_24-85; AMT28_25-87; AMT28_27-93; AMT28_28-95; AMT28_29-100; AMT28_30-101; AMT28_31-105; AMT28_32-111; AMT28_33-112; AMT28_34-117; AMT28_35-120; AMT28_36-124; AMT28_37-126; AMT28_3-8; AMT28_38-133; AMT28_40-137; AMT28_4-11; AMT28_41-142; AMT28_43-147; AMT28_44-150; AMT28_45-155; AMT28_46-158; AMT28_47-164; AMT28_48-166; AMT28_49-174; AMT28_50-176; AMT28_51-181; AMT28_5-13; AMT28_52-183; AMT28_53-188; AMT28_54-190; AMT28_55-198; AMT28_56-199; AMT28_57-204; AMT28_58-206; AMT28_59-210; AMT28_59-212; AMT28_61-218; AMT28_6-17; AMT28_62-220; AMT28_63-226; AMT28_64-227; AMT28_65-232; AMT28_66-234; AMT28_7-21; AMT28_8-24; AMT28_9-28; AMT29; AMT29_AA; AMT29_AB; AMT29_AC; AMT29_AD; AMT29_AE; AMT29_AF; AMT29_AG; AMT29_AH; AMT29_AI; AMT29_AJ; AMT29_AK; AMT29_AL; AMT29_AM; AMT29_AN; AMT29_AO; AMT29_AP; AMT29_AQ; AMT29_AR; AMT29_AS; AMT29_AV; AMT29_AX; AMT29_BC; AMT29_BD; AMT29_BE; AMT29_BF; AMT29_BG; AMT29_BH; AMT29_BI; AMT29_BJ; AMT29_BK; AMT29_BL; AMT29_BM; AMT29_BN; AMT29_BO; AMT29_BP; AMT29_BQ; AMT29_BR; AMT29_BS; AMT29_BT; AMT29_BU; AMT29_BV; AMT29_BW; AMT29_BX; AMT29_BY; AMT29_BZ; AMT29_CA; AMT29_CB; AMT29_CC; AMT29_CD; AMT29_CE; AMT29_CF; AMT29_CG; AMT29_CH; AMT29_CJ; AMT29_CK; AMT29_CL; AMT29_CM; AMT29_CN; AMT29_CO; AMT29_CP; AMT29_CQ; AMT29_CR; AMT29_CS; AMT29_CT; AMT29_CTD_001; AMT29_CTD_002; AMT29_CTD_003; AMT29_CTD_004; AMT29_CTD_005; AMT29_CTD_006; AMT29_CTD_007; AMT29_CTD_008; AMT29_CTD_009; AMT29_CTD_010; AMT29_CTD_011; AMT29_CTD_013; AMT29_CTD_015; AMT29_CTD_016; AMT29_CTD_017; AMT29_CTD_018; AMT29_CTD_019; AMT29_CTD_020; AMT29_CTD_021; AMT29_CTD_022; AMT29_CTD_024; AMT29_CTD_025; AMT29_CTD_026; AMT29_CTD_027; AMT29_CTD_028; AMT29_CTD_029; AMT29_CTD_030; AMT29_CTD_031; AMT29_CTD_032; AMT29_CTD_034; AMT29_CTD_035; AMT29_CTD_036; AMT29_CTD_037; AMT29_CTD_038; AMT29_CTD_039; AMT29_CTD_041; AMT29_CTD_042; AMT29_CTD_043; AMT29_CTD_044; AMT29_CTD_045; AMT29_CTD_046; AMT29_CTD_047; AMT29_CTD_048; AMT29_CTD_049; AMT29_CTD_050; AMT29_CTD_051; AMT29_CTD_052; AMT29_CTD_053; AMT29_CTD_054; AMT29_CTD_055; AMT29_CU; AMT29_CV; AMT29_CW; AMT29_CX; AMT29_CY; AMT29_CZ; AMT29_DA; AMT29_DB; AMT29_DC; AMT29_DD; AMT29_DE; AMT29_DF; AMT29_DG; AMT29_DH; AMT29_DI; AMT29_DJ; AMT29_DK; AMT29_DL; AMT29_DM; AMT29_DN; AMT29_DO; AMT29_DP; AMT29_DQ; AMT29_DR; AMT29_DS; AMT29_DT; AMT29_DU; AMT29_DV; AMT29_DZ; AMT29_EB; AMT29_EC; AMT29_EE; AMT29_EF; AMT29_EG; AMT29_EI; AMT29_EK; AMT29_EL; AMT29_EM; AMT29_EO; AMT29_EQ; AMT29_ER; AMT29_ES; AMT29_ET; AMT29_EV; ANT-XXXII/2; ANT-XXXIII/4; Arctic Amplification; Arctic Ocean; ARK-XXIV/1; ARK-XXIV/2; ARK-XXIX/2.2; ARK-XXV/1; ARK-XXV/2; ARK-XXVI/1; ARK-XXVII/1; ARK-XXVII/2; ARK-XXVIII/2; ARK-XXX/1.1; ARK-XXX/1.2; ARK-XXXI/1.1,PASCAL; ARK-XXXI/1.2; ARK-XXXI/2; AWI_BioOce; Barents Sea; Biological Oceanography @ AWI; Campaign; Canarias Sea; chlorophyll; Chlorophyll a; Chlorophyll a, Diatoms; Chlorophyll a, Dinoflagellata; Chlorophyll a, Green algae; Chlorophyll a, Haptophyta; Chlorophyll a, Prochlorococcus; Chlorophyll a, Prokaryotes; Chlorophyll a + Divinyl chlorophyll a + Chlorophyllide a; Chlorophyll b + Divinyl chlorophyll b + Chlorophyllide b; Chlorophyllide a; CT; CTD, towed system; CTD/Rosette; CTD/Rosette with Underwater Vision Profiler; CTD001; CTD002; CTD003; CTD004; CTD005; CTD006; CTD007; CTD008; CTD009; CTD010; CTD011; CTD012; CTD013; CTD014; CTD015; CTD016; CTD017; CTD018; CTD019; CTD020; CTD021; CTD022; CTD023; CTD024; CTD025; CTD026; CTD027; CTD028; CTD029; CTD030; CTD031; CTD032; CTD033; CTD034; CTD035; CTD036; CTD037; CTD038; CTD039; CTD040; CTD041; CTD042; CTD043; CTD044; CTD045; CTD046; CTD047; CTD048; CTD049; CTD050; CTD051; CTD052; CTD053; CTD054; CTD055; CTD056; CTD057; CTD058; CTD059; CTD060; CTD061; CTD062; CTD063; CTD-Acoustic Doppler Current Profiler; CTD-ADCP; CTD-RO; CTD-RO_UVP; CTD-twoyo; DATE/TIME; DEPTH, water; Diagnostic Pigment Analysis (DPA); Discovery (2013); Divinyl chlorophyll a; DPA; DY110; EG_I; EG_II; EG_III; EG_IV; Event label; Exploitation of Sentinel-5-P for Ocean Colour Products; FRAM; FRontiers in Arctic marine Monitoring; Fucoxanthin; Global Long-term Observations of Phytoplankton Functional Types from Space; GLOPHYTS; Hand net; HG_I; HG_II; HG_III; HG_IV; HG_IX; HG_V; HG_VI; HG_VIII; HGIV; High Performance Liquid Chromatography (HPLC); HN; HPLC; ICE; Ice station; James Clark Ross; JR18001; Kb0; LATITUDE; Lazarev Sea; LONGITUDE; N3; N4; N5; North Greenland Sea; North Sea; Norwegian Sea; ORDINAL NUMBER; Peridinin; phytoplankton functional types; pigments; Polarstern; PORTWIMS; Project Portugal Twinning for Innovation and Excellence in Marine Science and Earth Observation; PS103; PS103_0_Underway-3; PS103_1-1; PS103_11-1; PS103_15-1; PS103_22-5; PS103_23-5; PS103_2-4; PS103_27-2; PS103_29-3; PS103_3-1; PS103_31-2; PS103_34-6; PS103_39-3; PS103_40-3; PS103_4-1; PS103_43-4; PS103_45-3; PS103_48-1; PS103_5-2; PS103_59-2; PS103_6-6; PS103_67-1; PS103_8-3; PS103_9-1; PS106_18-2; PS106_21-2; PS106_27-6; PS106_28-2; PS106_31-2; PS106_32-2; PS106_45-1; PS106_50-1; PS106_ZODIAK_170527; PS106_ZODIAK_170529; PS106_ZODIAK_170531; PS106_ZODIAK_170601; PS106_ZODIAK_170607; PS106_ZODIAK_170608; PS106_ZODIAK_170617; PS106_ZODIAK_170618; PS106_ZODIAK_170619; PS106_ZODIAK_170624; PS106_ZODIAK_170625; PS106_ZODIAK_170626; PS106_ZODIAK_170627; PS106_ZODIAK_170629; PS106_ZODIAK_170630; PS106_ZODIAK_170701; PS106_ZODIAK_170702; PS106_ZODIAK_170703; PS106_ZODIAK_170705; PS106_ZODIAK_170706; PS106_ZODIAK_170708; PS106_ZODIAK_170709; PS106_ZODIAK_170710; PS106_ZODIAK_170711; PS106_ZODIAK_170713; PS106_ZODIAK_170714; PS106_ZODIAK_170715; PS106/1; PS106/2; PS107; PS107_0_underway-9; PS107_10-4; PS107_12-3; PS107_14-1; PS107_16-3; PS107_18-3; PS107_19-1; PS107_20-8; PS107_21-1; PS107_22-6; PS107_24-1; PS107_28-1; PS107_29-1; PS107_33-6; PS107_34-5; PS107_36-1; PS107_37-1; PS107_40-2; PS107_40-3; PS107_40-4; PS107_40-5; PS107_40-6; PS107_48-1; PS107_6-8; PS107_7-1; PS107_8-1; PS113; PS113_0_underway-5; PS113_11-2; PS113_1-2; PS113_13-2; PS113_14-2; PS113_15-1; PS113_17-2; PS113_18-2; PS113_20-1; PS113_21-1; PS113_22-2; PS113_23-2; PS113_25-1; PS113_26-2; PS113_27-1; PS113_28-1; PS113_29-2; PS113_30-2; PS113_31-1; PS113_3-2; PS113_33-1; PS113_5-2; PS113_6-2; PS113_7-2; PS113_9-2; PS120; PS120_0_underway-10; PS120_11-3; PS120_15-3; PS120_19-3; PS120_20-1; PS120_21-3; PS120_24-3; PS120_3-1; PS120_5-3; PS120_8-3; PS121; PS121_0_Underway-65; PS121_1-2; PS121_12-2; PS121_15-1; PS121_16-5; PS121_24-2; PS121_25-2; PS121_27-2; PS121_28-4; PS121_29-1; PS121_32-2; PS121_33-2; PS121_34-1; PS121_35-3; PS121_36-1; PS121_38-1; PS121_39-1; PS121_40-3; PS121_43-7; PS121_44-3; PS121_45-1; PS121_52-2; PS121_52-6; PS121_5-3; PS121_7-3; PS74; PS74/104-1; PS74/107-1; PS74/108-1; PS74/112-1; PS74/119-1; PS74/120-1; PS74/127-1; PS74/128-1; PS74/132-1; PS74/133-1; PS74/134-1; PS74/1-track; PS74/2-track; PS76; PS76/001-1; PS76/002-1; PS76/005-1; PS76/007-2; PS76/009-1; PS76/017-1; PS76/020-1; PS76/025-1; PS76/026-1; PS76/030-1; PS76/034-3; PS76/039-1; PS76/041-1; PS76/044-1; PS76/049-1; PS76/051-1; PS76/057-1; PS76/058-1; PS76/062-1; PS76/064-1; PS76/068-1; PS76/072-1; PS76/080-1; PS76/082-1; PS76/094-1; PS76/098-1; PS76/102-1; PS76/109-3; PS76/110-1; PS76/111-1; PS76/120-2; PS76/121-1; PS76/122-1; PS76/124-3; PS76/129-1; PS76/132-1; PS76/134-1; PS76/135-1; PS76/136-1; PS76/138-1; PS76/139-1; PS76/157-1; PS76/159-2; PS76/166-1; PS76/167-1; PS76/170-2; PS76/173-1; PS76/174-1; PS76/175-1; PS76/176-1; PS76/178-1; PS76/179-3; PS76/181-1; PS76/182-1; PS76/184-1; PS76/185-1; PS76/194-1; PS76/200-1; PS76/201-1; PS76/203-1; PS76/204-1; PS76/208-5; PS76/210-2; PS76/211-1; PS76/216-1; PS76/220-1; PS76/223-1; PS76/224-1; PS76/227-3; PS76/229-1; PS76/231-1; PS76/233-1; PS76/235-
    Type: Dataset
    Format: text/tab-separated-values, 37522 data points
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  • 7
    Publication Date: 2024-01-06
    Keywords: Bio-optical in-situ data; Comment; DATE/TIME; DEPTH, water; ESA_OC-CCI; Identification; LATITUDE; LONGITUDE; Ocean Colour; Ocean Colour multi-mission algorithm prototype system; OMAPS; remote sensing; Remote sensing reflectance at given wavelength
    Type: Dataset
    Format: text/tab-separated-values, 916687 data points
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  • 8
    Publication Date: 2024-01-06
    Keywords: Bio-optical in-situ data; Comment; DATE/TIME; DEPTH, water; ESA_OC-CCI; Identification; LATITUDE; LONGITUDE; Ocean Colour; Ocean Colour multi-mission algorithm prototype system; OMAPS; remote sensing; Remote sensing reflectance at given wavelength; Wavelength
    Type: Dataset
    Format: text/tab-separated-values, 3782904 data points
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  • 9
    Publication Date: 2024-01-06
    Keywords: Bio-optical in-situ data; Comment; DATE/TIME; DEPTH, water; ESA_OC-CCI; Identification; LATITUDE; LONGITUDE; Ocean Colour; Ocean Colour multi-mission algorithm prototype system; OMAPS; remote sensing; Remote sensing reflectance at given wavelength; Wavelength
    Type: Dataset
    Format: text/tab-separated-values, 5254044 data points
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  • 10
    Publication Date: 2024-04-10
    Description: Phytoplankton play a central role in the planetary cycling of important elements and compounds. Understanding how phytoplankton are responding to climate change is consequently a major question in Earth Sciences. Monitoring phytoplankton is key to answering this question. Satellite remote sensing of ocean colour is our only means of monitoring phytoplankton in the entire surface ocean at high temporal and large spatial scales, and the continuous ocean-colour data record is now approaching a length suitable for addressing questions around climate change, at least in some regions. Yet, developing ocean-colour algorithms for climate change studies requires addressing issues of ambiguity in the ocean-colour signal. For example, for the same chlorophyll-a concentration (Chl-a) of phytoplankton, the colour of the ocean can be different depending on the type of phytoplankton present. One route to tackle the issue of ambiguity is by enriching the ocean-colour data with information on sea surface temperature (SST), a good proxy of changes in three phytoplankton size classes (PSCs) independent of changes in total Chl-a, a measure of phytoplankton biomass. Using a global surface insitu dataset of HPLC (high performance liquid chromatography) pigments, size-fractionated filtration data, and concurrent satellite SST spanning from 1991 to 2021, we re-tuned, validated and advanced an SST-dependent three-component model that quantifies the relationship between total Chl-a and Chl-a associated with the three PSCs (pico-, nano- and microplankton). Similar to previous studies, striking dependencies between model parameters and SST were captured, which were found to improve model performance significantly. These relationships were applied to 40 years of monthly composites of satellite SST, and significant trends in model parameters were observed globally, in response to climate warming. Changes in these parameters highlight issues in estimating long-term trends in phytoplankton biomass (Chl-a) from ocean colour using standard empirical algorithms, which implicitly assume a fixed relationship between total Chl-a and Chl-a of the three size classes. The proposed ecological model will be at the centre of a new ocean-colour modelling framework, designed for investigating the response of phytoplankton to climate change, described in subsequent parts of this series of papers.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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