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  • 1
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    Atribacteria reproducing over millions of years in the Atlantic abyssal subseafloor (2020)
    American Society for Microbiology
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Vuillemin, A., Vargas, S., Coskun, O. K., Pockalny, R., Murray, R. W., Smith, D. C., D'Hondt, S., & Orsi, W. D. Atribacteria reproducing over millions of years in the Atlantic abyssal subseafloor. Mbio, 11(5), (2020): e01937-20, doi:10.1128/mBio.01937-20.
    Description: How microbial metabolism is translated into cellular reproduction under energy-limited settings below the seafloor over long timescales is poorly understood. Here, we show that microbial abundance increases an order of magnitude over a 5 million-year-long sequence in anoxic subseafloor clay of the abyssal North Atlantic Ocean. This increase in biomass correlated with an increased number of transcribed protein-encoding genes that included those involved in cytokinesis, demonstrating that active microbial reproduction outpaces cell death in these ancient sediments. Metagenomes, metatranscriptomes, and 16S rRNA gene sequencing all show that the actively reproducing community was dominated by the candidate phylum “Candidatus Atribacteria,” which exhibited patterns of gene expression consistent with fermentative, and potentially acetogenic, metabolism. “Ca. Atribacteria” dominated throughout the 8 million-year-old cored sequence, despite the detection limit for gene expression being reached in 5 million-year-old sediments. The subseafloor reproducing “Ca. Atribacteria” also expressed genes encoding a bacterial microcompartment that has potential to assist in secondary fermentation by recycling aldehydes and, thereby, harness additional power to reduce ferredoxin and NAD+. Expression of genes encoding the Rnf complex for generation of chemiosmotic ATP synthesis were also detected from the subseafloor “Ca. Atribacteria,” as well as the Wood-Ljungdahl pathway that could potentially have an anabolic or catabolic function. The correlation of this metabolism with cytokinesis gene expression and a net increase in biomass over the million-year-old sampled interval indicates that the “Ca. Atribacteria” can perform the necessary catabolic and anabolic functions necessary for cellular reproduction, even under energy limitation in millions-of-years-old anoxic sediments.
    Description: This work was supported primarily by the Deutsche Forschungsgemeinschaft (DFG) project OR 417/1-1 granted to W.D.O. Preliminary work was supported by the Center for Dark Energy Biosphere Investigations project OCE-0939564 also granted to W.D.O. The expedition was funded by the US National Science Foundation through grant NSF-OCE-1433150 to S.D. and R.P. R.W.M. led the expedition. Shipboard microbiology efforts were supported by the Center for Dark Energy Biosphere Investigations (C-DEBI grant NSF-OCE-0939564). This is C-DEBI publication 545. This is a contribution of the Deep Carbon Observatory (DCO).
    Keywords: Deep biosphere ; Energy limit to life ; Atribacteria ; Acetogenesis ; Metagenomics ; Transcriptomics ; Fermentation ; Bacterial microcompartment ; Clade JS1 ; Metatranscriptomics ; Subseafloor life
    Repository Name: Woods Hole Open Access Server
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  • 2
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    Intercomparison of XRF core scanning results from seven labs and approaches to practical calibration (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Dunlea, A. G., Murray, R. W., Tada, R., Alvarez-Zarikian, C. A., Anderson, C. H., Gilli, A., Giosan, L., Gorgas, T., Hennekam, R., Irino, T., Murayama, M., Peterson, L. C., Reichart, G., Seki, A., Zheng, H., & Ziegler, M. Intercomparison of XRF core scanning results from seven labs and approaches to practical calibration. Geochemistry Geophysics Geosystems, 21(9), (2020): e2020GC009248, doi:10.1029/2020GC009248.
    Description: X‐ray fluorescence (XRF) scanning of marine sediment has the potential to yield near‐continuous and high‐resolution records of elemental abundances, which are often interpreted as proxies for paleoceanographic processes over different time scales. However, many other variables also affect scanning XRF measurements and convolute the quantitative calibrations of element abundances and comparisons of data from different labs. Extensive interlab comparisons of XRF scanning results and calibrations are essential to resolve ambiguities and to understand the best way to interpret the data produced. For this study, we sent a set of seven marine sediment sections (1.5 m each) to be scanned by seven XRF facilities around the world to compare the outcomes amidst a myriad of factors influencing the results. Results of raw element counts per second (cps) were different between labs, but element ratios were more comparable. Four of the labs also scanned a set of homogenized sediment pellets with compositions determined by inductively coupled plasma‐optical emission spectrometry (ICP‐OES) and ICP‐mass spectrometry (MS) to convert the raw XRF element cps to concentrations in two ways: a linear calibration and a log‐ratio calibration. Although both calibration curves are well fit, the results show that the log‐ratio calibrated data are significantly more comparable between labs than the linearly calibrated data. Smaller‐scale (higher‐resolution) features are often not reproducible between the different scans and should be interpreted with caution. Along with guidance on practical calibrations, our study recommends best practices to increase the quality of information that can be derived from scanning XRF to benefit the field of paleoceanography.
    Description: Funding for this research was provided by the U.S. National Science Foundation to R. W. M. (Grant 1130531). USSSP postcruise support was provided to Expedition 346 shipboard participants A. G. D., R. W. M., L. G., C. A. Z., and L. P. Portions of this material are based upon work supported while R. W. M. was serving at the National Science Foundation.
    Keywords: XRF scanning ; Quantitative XRF ; Paleoceanography ; Sedimentary geochemistry ; XRF calibration ; XRF intercomparison
    Repository Name: Woods Hole Open Access Server
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  • 3
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    Deep North Atlantic last glacial maximum salinity reconstruction (2021)
    American Geophysical Union
    Details
    Publication Date: 2022-10-19
    Description: Author Posting. © American Geophysical Union, 2021. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Paleoceanography and Paleoclimatology 36(7), (2021): e2020PA004088, https://doi.org/10.1029/2020PA004088.
    Description: We reconstruct deep water-mass salinities and spatial distributions in the western North Atlantic during the Last Glacial Maximum (LGM, 19–26 ka), a period when atmospheric CO2 was significantly lower than it is today. A reversal in the LGM Atlantic meridional bottom water salinity gradient has been hypothesized for several LGM water-mass reconstructions. Such a reversal has the potential to influence climate, ocean circulation, and atmospheric CO2 by increasing the thermal energy and carbon storage capacity of the deep ocean. To test this hypothesis, we reconstructed LGM bottom water salinity based on sedimentary porewater chloride profiles in a north-south transect of piston cores collected from the deep western North Atlantic. LGM bottom water salinity in the deep western North Atlantic determined by the density-based method is 3.41–3.99 ± 0.15% higher than modern values at these sites. This increase is consistent with: (a) the 3.6% global average salinity change expected from eustatic sea level rise, (b) a northward expansion of southern sourced deep water, (c) shoaling of northern sourced deep water, and (d) a reversal of the Atlantic's north-south deep water salinity gradient during the LGM.
    Description: This work was supported by the US National Science Foundation (grant numbers 1433150 and 1537485).
    Description: 2021-10-24
    Keywords: Carbon cycle ; Climate change ; Deep water ; Glaciation ; Meridional overturning circulation ; Paleosalinity ; Porewater
    Repository Name: Woods Hole Open Access Server
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  • 4
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    Trace metal evidence for deglacial ventilation of the abyssal Pacific and Southern Oceans (2021)
    American Geophysical Union
    Details
    Publication Date: 2022-10-19
    Description: Author Posting. © American Geophysical Union, 2021. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Paleoceanography and Paleoclimatology 36(9), (2021): e2021PA004226, https://doi.org/10.1029/2021PA004226.
    Description: The deep ocean has long been recognized as the reservoir that stores the carbon dioxide (CO2) removed from the atmosphere during Pleistocene glacial periods. The removal of glacial atmospheric CO2 into the ocean is likely modulated by an increase in the degree of utilization of macronutrients at the sea surface and enhanced storage of respired CO2 in the deep ocean, known as enhanced efficiency of the biological pump. Enhanced biological pump efficiency during glacial periods is most easily documented in the deep ocean using proxies for oxygen concentrations, which are directly linked to respiratory CO2 levels. We document the enhanced storage of respired CO2 during the Last Glacial Maximum (LGM) in the Pacific Southern Ocean and deepest Equatorial Pacific using records of deglacial authigenic manganese, which form as relict peaks during increases in bottom water oxygen (BWO) concentration. These peaks are found at depths and regions where other oxygenation histories have been ambiguous, due to diagenetic alteration of authigenic uranium, another proxy for BWO. Our results require that the entirety of the abyssal Pacific below approximately 1,000 m was enriched in respired CO2 and depleted in oxygen during the LGM. The presence of authigenic Mn enrichment in the deep Equatorial Pacific for each of the last five deglaciations suggests that the storage of respired CO2 in the deep ocean is a ubiquitous feature of late-Pleistocene ice ages.
    Description: This work was performed with support from the National Science Foundation (NSF) over about 30 years. The TT013 and NBP9802 cores were collected during the U.S. JGOFS program. Their collection and analyses were supported by NSF OCE-9022301 and OPP-95303398 to R. F. Anderson, and NSF OCE 9301097 to R. W. Murray. Coring and radiocarbon analyses on NBP1702 were funded by NSF OPP-1542962. XRF analysis on NBP9802 and NBP1702 cores, as well as additional radiocarbon measurements, was funded by an LDEO Climate Center Grant to F. J. Pavia.
    Description: 2022-02-17
    Keywords: Manganese ; Southern Ocean ; Pacific Ocean ; Respired carbon ; Bottom water oxygen ; Deglaciations
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  • 5
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    Zircon U-Pb age constraints on NW Himalayan exhumation from the Laxmi Basin, Arabian Sea (2022)
    American Geophysical Union
    Details
    Publication Date: 2022-10-19
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zhou, P., Stockli, D. F., Ireland, T., Murray, R. W., & Clift, P. D. Zircon U-Pb age constraints on NW Himalayan exhumation from the Laxmi Basin, Arabian Sea. Geochemistry Geophysics Geosystems, 23(1), (2022): e2021GC010158, https://doi.org/10.1029/2021GC010158.
    Description: The Indus Fan, located in the Arabian Sea, contains the bulk of the sediment eroded from the Western Himalaya and Karakoram. Scientific drilling in the Laxmi Basin by the International Ocean Discovery Program recovered a discontinuous erosional record for the Indus River drainage dating back to at least 9.8 Ma, and with a single sample from 15.6 Ma. We dated detrital zircon grains by U-Pb geochronology to reconstruct how erosion patterns changed through time. Long-term increases in detrital zircon U-Pb components of 750–1,200 and 1,500–2,300 Ma record increasing preferential erosion of the Himalaya relative to the Karakoram between 8.3–7.0 and 5.9–5.7 Ma. The average contribution of Karakoram-derived sediment to the Indus Fan fell from 70% of the total at 8.3–7.0 Ma to 35% between 5.9 and 5.7 Ma. An increase in the contribution of 1,500–2,300 Ma zircons starting between 2.5 and 1.6 Ma indicates significant unroofing of the Inner Lesser Himalaya (ILH) by that time. The trend in zircon age spectra is consistent with bulk sediment Nd isotope data. The initial change in spatial erosion patterns at 7.0–5.9 Ma occurred during a time of drying climate in the foreland. The increase in ILH erosion postdated the onset of dry-wet glacial-interglacial cycles suggesting some role for climate control. However, erosion driven by rising topography in response to formation of the ILH thrust duplex, especially during the Pliocene, also played an important role, while the influence of the Nanga Parbat Massif to the total sediment flux was modest.
    Description: This work was partially funded by a grant from the USSSP, as well as additional funding from the Charles T. McCord Chair in petroleum geology at LSU, and the Chevron (Gulf) Centennial professorship and the UTChron Laboratory at the University of Texas.
    Keywords: Erosion ; Zircon ; Monsoon ; Himalaya ; Provenance
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  • 6
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    Marine sedimentary records of chemical weathering evolution in the western Himalaya since 17 Ma (2021)
    Geological Society of America
    Details
    Publication Date: 2022-10-19
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zhou, P., Ireland, T., Murray, R. W., & Clift, P. D. Marine sedimentary records of chemical weathering evolution in the western Himalaya since 17 Ma. Geosphere, 17(3), (2021): 824–853, https://doi.org/10.1130/GES02211.1.
    Description: The Indus Fan derives sediment from the western Himalaya and Karakoram. Sediment from International Ocean Discovery Program drill sites in the eastern part of the fan coupled with data from an industrial well near the river mouth allow the weathering history of the region since ca. 16 Ma to be reconstructed. Clay minerals, bulk sediment geochemistry, and magnetic susceptibility were used to constrain degrees of chemical alteration. Diffuse reflectance spectroscopy was used to measure the abundance of moisture-sensitive minerals hematite and goethite. Indus Fan sediment is more weathered than Bengal Fan material, probably reflecting slow transport, despite the drier climate, which slows chemical weathering rates. Some chemical weathering proxies, such as K/Si or kaolinite/(illite + chlorite), show no temporal evolution, but illite crystallinity and the chemical index of alteration do have statistically measurable decreases over long time periods. Using these proxies, we suggest that sediment alteration was moderate and then increased from 13 to 11 Ma, remained high until 9 Ma, and then reduced from that time until 6 Ma in the context of reduced physical erosion during a time of increasing aridity as tracked by hematite/goethite values. The poorly defined reducing trend in weathering intensity is not clearly linked to global cooling and at least partly reflects regional climate change. Since 6 Ma, weathering has been weak but variable since a final reduction in alteration state after 3.5 Ma that correlates with the onset of Northern Hemispheric glaciation. Reduced or stable chemical weathering at a time of falling sedimentation rates is not consistent with models for Cenozoic global climate change that invoke greater Himalayan weathering fluxes drawing down atmospheric CO2 but are in accord with the idea of greater surface reactivity to weathering.
    Description: This study was made possible by samples provided by the IODP. The work was partially funded by a grant from The U.S. Science Support Program (USSSP), as well as additional funding from the Charles T. McCord Jr. Endowed Chair in petroleum geology at LSU.
    Keywords: Alteration ; Arabian Sea ; Arid environment ; Asia ; Bengal Fan ; Chemical composition ; Chemical weathering ; Chlorite ; Chlorite group ; Clay minerals ; Climate change ; Cooling ; Crystallinity ; Emission spectra ; Erosion ; Expedition 355 ; Glaciation ; Goethite ; Grain size ; Hematite ; Himalayas ; ICP mass spectra ; Illite ; Indian Ocean ; Indus Fan ; International Ocean Discovery Program ; IODP Site U1456 ; IODP Site U1457 ; Kaolinite ; Karakoram ; Magnetic properties ; Magnetic susceptibility ; Marine environment ; Mass spectra ; Mineral assemblages ; Moisture ; Oxides ; Paleoclimatology ; Paleoenvironment ; Paleomagnetism ; Provenance ; Reactivity ; Reconstruction ; Sediment transport ; Sedimentary rocks ; Sedimentation ; Sedimentation rates ; Sheet silicates ; Silicates ; Spectra ; Terrestrial environment ; Transport ; Weathering
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  • 7
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    The contribution of water radiolysis to marine sedimentary life (2021)
    Nature Research
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    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sauvage, J. F., Flinders, A., Spivack, A. J., Pockalny, R., Dunlea, A. G., Anderson, C. H., Smith, D. C., Murray, R. W., & D'Hondt, S. The contribution of water radiolysis to marine sedimentary life. Nature Communications, 12(1), (2021): 1297, https://doi.org/10.1038/s41467-021-21218-z.
    Description: Water radiolysis continuously produces H2 and oxidized chemicals in wet sediment and rock. Radiolytic H2 has been identified as the primary electron donor (food) for microorganisms in continental aquifers kilometers below Earth’s surface. Radiolytic products may also be significant for sustaining life in subseafloor sediment and subsurface environments of other planets. However, the extent to which most subsurface ecosystems rely on radiolytic products has been poorly constrained, due to incomplete understanding of radiolytic chemical yields in natural environments. Here we show that all common marine sediment types catalyse radiolytic H2 production, amplifying yields by up to 27X relative to pure water. In electron equivalents, the global rate of radiolytic H2 production in marine sediment appears to be 1-2% of the global organic flux to the seafloor. However, most organic matter is consumed at or near the seafloor, whereas radiolytic H2 is produced at all sediment depths. Comparison of radiolytic H2 consumption rates to organic oxidation rates suggests that water radiolysis is the principal source of biologically accessible energy for microbial communities in marine sediment older than a few million years. Where water permeates similarly catalytic material on other worlds, life may also be sustained by water radiolysis.
    Description: This project was funded by the US National Science Foundation (through grant NSF-OCE-1130735 and the Center for Deep Dark Energy Biosphere Investigations [C-DEBI; grant NSF-OCE-0939564]); the National Aeronautics and Space Administration (grant NNX12AD65G); the U.S. Science Support Program, IODP; and a Schlanger Ocean Drilling Fellowship to J.F.S. This is a contribution to the Deep Carbon Observatory (DCO). It is C-DEBI publication 553.
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