ALBERT

Description: Shear TUrbulence Resuspension Mesocosm (STURM) tanks, with high instantaneous bottom shear stress and realistic water column mixing in a single system, allow realistic benthic-pelagic coupling studies with sediment resuspension. The 1 m3 tanks can be programmed to produce tidal or episodic sediment resuspension for extended time periods (e.g. 4 weeks), over muddy sediments with a variety of benthic organisms. A resuspension paddle produces uniform bottom shear stress across the sediment surface while gently mixing a 1 m deep overlying water column. The STURM tanks can be programmed to different magnitudes, frequencies, and durations of bottom shear stress (and thus resuspension) with proportional water column turbulence levels over a wide range of mixing settings for benthic-pelagic coupling experiments. Over ten STURM calibration settings, RMS turbulent velocity ranged from 0.26 to 4.52 cm s1, energy dissipation rate from 0.0016 to 2.65 cm2 s3, the average bottom shear stress from 0.0035 to 0.19 Pa, and the instantaneous maximum bottom shear stress from 0.07 to 1.7 Pa. We have performed four 4-week benthic-pelagic coupling ecosystem experiments with tidal resuspension and stepwise erosion experiments (both with and without infaunal bivalves), carried out experiments on oyster biodeposit resuspension, mimicked storms overlain on tidal resuspension, and studied the effects of varying frequency and duration of resuspension on sedimentary contaminant release. The large size of the tanks allows water quality and particle measurements using standard oceanographic instrumentation. The realistic scale and complexity of the contained ecosystems has revealed indirect feedbacks and responses that are not observable in smaller, less complex experimental systems.

Description: An inexpensive, laboratory-based, strain gauge valve gape monitor (SGM) was developed to monitor the valve gape behavior of bivalve molluscs in response to diel-cycling hypoxia. A Wheatstone bridge was connected to strain gauges that were attached to the shells of oysters (Crassostrea virginica). The recorded signals allowed for the opening and closing of the bivalves to be recorded continuously over two-day periods of experimentally-induced diel-cycling hypoxia and diel-cycling changes in pH. Here, we describe a protocol for developing an inexpensive strain gauge monitor and describe, in an example laboratory experiment, how we used it to measure the valve gape behavior of Eastern oysters (C. virginica), in response to diel-cycling hypoxia and cyclical changes in pH. Valve gape was measured on oysters subjected to cyclical severe hypoxic (0.6 mg/L) dissolved oxygen conditions with and without cyclical changes in pH, cyclical mild hypoxic (1.7 mg/L) conditions and normoxic (7.3 mg/L) conditions. We demonstrate that when oysters encounter repeated diel cycles, they rapidly close their shells in response to severe hypoxia and close with a time lag to mild hypoxia. When normoxia is restored, they rapidly open again. Oysters did not respond to cyclical pH conditions superimposed on diel cycling severe hypoxia. At reduced oxygen conditions, more than one third of the oysters closed simultaneously. We demonstrate that oysters respond to diel-cycling hypoxia, which must be considered when assessing the behavior of bivalves to dissolved oxygen. The valve SGM can be used to assess responses of bivalve molluscs to changes in dissolved oxygen or contaminants. Sealing techniques to better seal the valve gape strain gauges from sea water need further improvement to increase the longevity of the sensors.

Description: Poly (Propylene Fumarate) (PPF), a novel, bulk erosion, biodegradable polymer, has been shown to have osteoconductive effects in vivo when used as a bone regeneration scaffold (Peter, S. J., Suggs, L. J., Yaszemski, M. J., Engel, P. S., and Mikos, A. J., 1999, J. Biomater. Sci. Polym. Ed., 10, pp. 363-373). The material properties of the polymer allow it to be injected into irregularly shaped voids in vivo and provide mechanical stability as well as function as a bone regeneration scaffold. We fabricated a series of biomaterial composites, comprised of varying quantities of PPF, NaCl and beta-tricalcium phosphate (beta-TCP), into the shape of right circular cylinders and tested the mechanical properties in four-point bending and compression. The mean modulus of elasticity in compression (Ec) was 1204.2 MPa (SD 32.2) and the mean modulus of elasticity in bending (Eb) was 1274.7 MPa (SD 125.7). All of the moduli were on the order of magnitude of trabecular bone. Changing the level of NaCl from 20 to 40 percent, by mass, did not decrease Ec and Eb significantly, but did decrease bending and compressive strength significantly. Increasing the beta-TCP from 0.25 g/g PPF to 0.5 g/g PPF increased all of the measured mechanical properties of PPF/NVP composites. These results indicate that this biodegradable polymer composite is an attractive candidate for use as a replacement scaffold for trabecular bone.

Description: AVIRIS is a facility consisting of a flight system, a ground data system, a calibration facility, and a full-time operations team. The facility was developed by JPL under funding from NASA. NASA also provides funding for operations and maintenance. The flight system is a whisk-broom imager that acquires data in 224 narrow, contiguous spectral bands covering the solar reflected portion of the electromagnetic spectrum. It is flown aboard the NASA high altitude ER-2 research aircraft. The ground data system is a facility dedicated to the processing and distribution of data acquired by AVIRIS. It operates year round at JPL. The calibration facility consists of a calibration laboratory at JPL and a suite of field instruments and procedures for performing inflight calibration of AVIRIS. A small team of engineers, technicians, and scientists supports a yearly operations schedule that includes 6 months of flight operations, 6 months of routine ground maintenance of the flight system, and year-round data processing and distribution. Details of the AVIRIS system, its performance history, and future plans are described.

Description: An upgraded version of AVIRIS, an airborne imaging spectrometer based on a whiskbroom-type scanner coupled via optical fibers to four dispersive spectrometers, that has been in operation since 1987 is described. Emphasis is placed on specific AVIRIS subsystems including foreoptics, fiber optics, and an in-flight reference source; spectrometers and detector dewars; a scan drive mechanism; a signal chain; digital electronics; a tape recorder; calibration systems; and ground support requirements.

Description: Recognizing the importance of building software with the robustness to accommodate rapid advances in technology, developers have focused on methods which preserve both past and future investment in software and in providing an advanced software engineering environment that frees the engineer, to the greatest extent possible, from the more routine aspects of software design and development. The software engineer is permitted to concentrate on the creative aspects of problem resolution. Standard languages such as Ada maximize portability across hardware and operating systems. Standard interfaces which enhance portability and permit the incorporation of new technology as it becomes available have been developed. Software design and development techniques which maximize portability receive increasing emphasis. Experience gained in porting an Ada application between two widely varying environments is evaluated in light of current practices to maximize software portability.

Description: An evaluation of existing models for Large Eddy Simulations (LES) of incompressible turbulent flows has been completed. LES is a computation in which the large, energy-carrying structures to momentum and energy transfer is computed exactly, and only the effect of the smallest scales of turbulence is modeled. That is, the large eddies are computed and the smaller eddies are modeled. The dynamics of the largest eddies are believed to account for most of sound generation and transport properties in a turbulent flow. LES analysis is based on an observation that pressure, velocity, temperature, and other variables are the sum of their large-scale and small-scale parts. For instance, u(i) (velocity) can be written as the sum of bar-u(i) and u(i)-prime, where bar-u(i) is the large-scale and u(i)-prime is the subgrid-scale (SGS). The governing equations for large eddies in compressible flows are obtained after filtering the continuity, momentum, and energy equations, and recasting in terms of Favre averages. The filtering operation maintains only large scales. The effects of the small-scales are present in the governing equations through the SGS stress tensor tau(ij) and SGS heat flux q(i). The mathematical formulation of the Favre-averaged equations of motion for LES is complete.

Description: A sample return container is being developed by Honeybee Robotics to receive samples from a derivative of the Champollion/ST4 Sample Acquisition and Transfer Mechanism or other samplers and then hermetically seal samples for a sample return mission. The container is enclosed in a phase change material (PCM) chamber to prevent phase change during return and re-entry to earth. This container is designed to operate passively with no motors and actuators. Using the sampler's featured drill tip for interfacing, transfer-ring and sealing samples, the container consumes no electrical power and therefore minimizes sample temperature change. The circular container houses a few isolated canisters, which will be sealed individually for samples acquired from different sites or depths. The drill based sampler indexes each canister to the sample transfer position, below the index interface for sample transfer. After sample transfer is completed, the sampler indexes a seal carrier, which lines up seals with the openings of the canisters. The sampler moves to the sealing interface and seals the sample canisters one by one. The sealing interface can be designed to work with C-seals, knife edge seals and cup seals. Again, the sampler provides all sealing actuation. This sample return container and co-engineered sample acquisition system are being developed by Honeybee Robotics in collaboration with the JPL Exploration Technology program.

Description: The specifications of the plant research unit (PRU) plant habitat, designed for space station operations, are presented. A prototype brassboard model of the PRU is described, and the results of the subsystems tests are outlined. The effects of the long term red light emitting diode (LED) illumination as the sole source for plant development were compared with red LEDs supplemented with blue wavelengths, and white fluorescent sources. It was found that wheat and Arabidopsis were able to complete a life cycle under red LEDs alone, but with differences in physiology and morphology. The differences noted were greatest for the Arabidopsis, where the time to flowering was increased under red illumination. The addition of 10 percent of blue light was effective in eliminating the observed differences. The results of the comparative testing of three nutrient delivery systems for the PRU are discussed.

Description: This chapter is concerned with two types of radiometric measurements essential to verify atmospheric correction algorithms and to calibrate vicariously satellite ocean color sensors. The first type is a photometric measurement of the direct solar beam to determine the optical thickness of the atmosphere. The intensity of the solar beam can be measured directly, or obtained indirectly from measurements of diffuse global upper hemispheric irradiance. The second type is a measurement of the solar aureole and sky radiance distribution using a CCD camera, or a scanning radiometer viewing in and perpendicular to the solar principal plane. From the two types of measurements, the optical properties of aerosols, highly variable in space and time, can be derived. Because of the high variability, the aerosol properties should be known at the time of satellite overpass. Atmospheric optics measurements, however, are not easy to perform at sea, from a ship or any platform. This complicates the measurement protocols and data analysis. Some instrumentation cannot be deployed at sea, and is limited to island and coastal sites. In the following, measurement protocols are described for radiometers commonly used to measure direct atmospheric transmittance and sky radiance, namely standard sun photometers, fast-rotating shadow-band radiometers, automated sky scanning systems, and CCD cameras. Methods and procedures to analyze and quality control the data are discussed, as well as proper measurement strategies for evaluation of atmospheric correction algorithms and satellite-derived ocean color.