ALBERT

Description: Presented here is the complete genome sequence of Thiomicrospira crunogena XCL-2, representative of ubiquitous chemolithoautotrophic sulfur-oxidizing bacteria isolated from deep-sea hydrothermal vents. This gammaproteobacterium has a single chromosome (2,427,734 base pairs), and its genome illustrates many of the adaptations that have enabled it to thrive at vents globally. It has 14 methyl-accepting chemotaxis protein genes, including four that may assist in positioning it in the redoxcline. A relative abundance of coding sequences (CDSs) encoding regulatory proteins likely control the expression of genes encoding carboxysomes, multiple dissolved inorganic nitrogen and phosphate transporters, as well as a phosphonate operon, which provide this species with a variety of options for acquiring these substrates from the environment. Thiom. crunogena XCL-2 is unusual among obligate sulfur-oxidizing bacteria in relying on the Sox system for the oxidation of reduced sulfur compounds. The genome has characteristics consistent with an obligately chemolithoautotrophic lifestyle, including few transporters predicted to have organic allocrits, and Calvin-Benson-Bassham cycle CDSs scattered throughout the genome.

Description: The interaction of clouds with solar and terrestrial radiation is one of the most important topics of climate research. In recent years it has been recognized that only a full three-dimensional (3D) treatment of this interaction can provide answers to many climate and remote sensing problems, leading to the worldwide development of numerous 3D radiative transfer (RT) codes. The international Intercomparison of 3D Radiation Codes (I3RC), described in this paper, sprung from the natural need to compare the performance of these 3D RT codes used in a variety of current scientific work in the atmospheric sciences. I3RC supports intercomparison and development of both exact and approximate 3D methods in its effort to 1) understand and document the errors/limits of 3D algorithms and their sources; 2) provide “baseline” cases for future code development for 3D radiation; 3) promote sharing and production of 3D radiative tools; 4) derive guidelines for 3D radiative tool selection; and 5) improve atmospheric science education in 3D RT. Results from the two completed phases of I3RC have been presented in two workshops and are expected to guide improvements in both remote sensing and radiative energy budget calculations in cloudy atmospheres.

Description: Atmospheric radiative transfer plays a central role in understanding global climate change and anthropogenic climate forcing, and in the remote sensing of surface and atmospheric properties. Because of their opacity and highly scattering nature, clouds (covering more than half the planet at any time) pose unique challenges in atmospheric radiative transfer calculations. Some widely-used assumptions regarding clouds—such as having a flat top and base, horizontal uniformity, and infinite extent—are amenable to simple one-dimensional (1-D) radiative transfer and are therefore attractive from a computational point of view. However, these assumptions are completely unrealistic and yield errors. The ever-increasing need to realistically simulate cloud radiative processes in remote sensing and energy budget applications has contributed to the recent rapid growth of the three-dimensional (3-D) radiative transfer (RT) community [e.g., Marshak and Davis, 2005].

Description: Bottom-simulating reflectors (BSR) are observed commonly at a depth of several hundred meters below the seafloor in continental margin sedimentary sections that have undergone recent tectonic consolidation or rapid accumulation. They are believed to correspond to the deepest level at which methane hydrate (clathrate) is stable. We present a model in which BSR hydrate layers are formed through the removal of methane from upward moving pore fluids as they pass into the hydrate stability field. In this model, most of the methane is generated below the level of hydrate stability, but not at depths sufficient for significant thermogenic production; the methane is primarily biogenic in origin. The model requires either a mechanism to remove dissolved methane from the pore fluids or disseminated free gas carried upward with the pore fluid. The model accounts for the evidence that the hydrate is concentrated in a layer at the base of the stability field, for the source of the large amount of methane contained in the hydrate, and for BSRs being common only in special environments. Strong upward fluid expulsion into the hydrate stability field does not occur in normal sediment depositional regimes, so BSRs are uncommon. Upward fluid expulsion does occur as a result of tectonic thickening and loading in subduction zone accretionary wedges and in areas where rapid deposition results in initial undercconsolidation. In these areas hydrate BSRs are common. The most poorly quantified aspect of the model is the efficiency with which methane is removed and hydrate is formed as pore fluids pass into the hydrate stability field. The critical boundary in the phase diagram between the fluid-plus-hydrate and fluid-only fields is not well constrained. However, the amount of methane required to form the hydrate and limited data on methane concentrations in pore fluids from deep-sea boreholes suggest very efficient removal of methane from rising fluid that may contain less than the amount required for free gas production. In most fluid expulsion regimes, the quantity of fluid moved upward to the seafloor is great enough to continually remove the excess chloride and the residue of isotope fractionation resulting from hydrate formation. Thus, as observed in borehole data, there are no large chloride or isotope anomalies remaining in the local pore fluids. The differences in the concentration of methane and probably of CO2 in the pore fluid above and below the base of the stability field may have a significant influence on early sediment diagenetic reactions.

Description: The LaRonde Penna Au-rich volcanogenic massive sulfide (VMS) deposit is the largest Au deposit currently mined in Canada (58.8 Mt at 4.31 g/t, containing 8.1 Moz of Au). It is part of the Doyon-Bousquet-LaRonde mining camp located in the eastern part of the Blake River Group of the Abitibi greenstone belt which is host to several of the world’s most important, present and past, Au-rich VMS deposits (e.g., Horne, Quemont, Bousquet, Bousquet 2-Dumagami). The LaRonde Penna deposit consists of massive to semimassive sulfide lenses (Au-Zn-Ag-Cu-Pb), stacked in the upper part of a steeply dipping, south-facing homoclinal volcanic sequence composed of extensive tholeiitic basaltic flows (Hébécourt Formation) overlain by tholeiitic to transitional, mafic to intermediate, effusive and volcaniclastic units at the base (lower member of the Bousquet Formation) and transitional to calc-alkaline, intermediate to felsic, effusive and intrusive rocks on top (upper member of the Bousquet Formation). The mafic to felsic volcanism of the Hébécourt Formation and of the lower member of the Bousquet Formation formed an extensive submarine basement or platform on which the intermediate to felsic rocks of the upper member of the Bousquet Formation were emplaced at restricted submarine eruptive centers or as shallow composite intrusive complexes. The submarine felsic volcanic rocks of the upper member of the Bousquet Formation are characterized by dacitic to rhyodacitic autoclastic (flow breccia) deposits that are cut and overlain by rhyodacitic and rhyolitic domes and/or partly extrusive cryptodomes and by intermediate to mafic sills and dikes. This volcanic architecture is thought to have been responsible for internal variations in ore and alteration styles, not only from one lens to another, but also along a single mineralized horizon or lens. In the upper part of the mine, the 20 North lens comprises a transposed pyrite-chalcopyrite (Au-Cu) stockwork (20N Au zone) overlain by a pyrite-sphalerite-galena-chalcopyrite-pyrrhotite (Zn-Ag-Pb) massive sulfide lens (20N Zn zone). The latter was formed, at least in part, by replacement of footwall rhyodacitic autoclastic deposits emplaced within a subbasin located between two rhyolite domes or cryptodomes. The 20N Zn zone tapers with depth in the mine and gives way to the 20N Au zone. At depth in the mine, the 20N Au zone consists of semimassive sulfides (Au-rich pyrite and chalcopyrite) enclosed by a large aluminous alteration halo on the margin of a large rhyolitic dome or cryptodome. U-Pb zircon geochronology gives ages of 2698.3 ± 0.8 and 2697.8 ± 1 Ma for the footwall and hanging-wall units of the 20 North lens, respectively. Thus, the formation of the 20 North lens was coeval with other VMS deposits in the Bousquet Formation and in the uppermost units of the Blake River Group. Although deformation and metamorphism have affected the primary mineral assemblages and the original geometry of the deposit, these events were not responsible for the different auriferous ore zones and alteration at LaRonde Penna. Studies of the LaRonde Penna deposit show that the hydrothermal system evolved in time and space from near-neutral seawater-dominated hydrothermal fluids, responsible for Au-Cu-Zn-Ag-Pb mineralization, to highly acidic fluids with possible direct magmatic contributions, responsible for Au ± Cu-rich ore and aluminous alteration. The different ore types and alteration reflect the evolving local volcanic setting described in this study.

Description: Large uncertainties remain in the current and future contribution to sea level rise from Antarctica. Climate warming may increase snowfall in the continent’s interior1,2,3, but enhance glacier discharge at the coast where warmer air and ocean temperatures erode the buttressing ice shelves4,5,6,7,8,9,10,11. Here, we use satellite interferometric synthetic-aperture radar observations from 1992 to 2006 covering 85% of Antarctica’s coastline to estimate the total mass flux into the ocean. We compare the mass fluxes from large drainage basin units with interior snow accumulation calculated from a regional atmospheric climate model for 1980 to 2004. In East Antarctica, small glacier losses in Wilkes Land and glacier gains at the mouths of the Filchner and Ross ice shelves combine to a near-zero loss of 4±61 Gt yr−1. In West Antarctica, widespread losses along the Bellingshausen and Amundsen seas increased the ice sheet loss by 59% in 10 years to reach 132±60 Gt yr−1 in 2006. In the Peninsula, losses increased by 140% to reach 60±46 Gt yr−1 in 2006. Losses are concentrated along narrow channels occupied by outlet glaciers and are caused by ongoing and past glacier acceleration. Changes in glacier flow therefore have a significant, if not dominant impact on ice sheet mass balance.

Description: The sediment-buried eastern flank of the Juan de Fuca Ridge provides a unique environment for studying the thermal nature and geochemical consequences of hydrothermal circulation in young ocean crust. Just 18 km east of the spreading axis, where the sea-floor age is 0.62 Ma, sediments lap onto the ridge flank and create a sharp boundary between sediment-free and sediment-covered igneous crust. Farther east, beneath the nearly continuous turbidite sediment cover of Cascadia Basin, the buried basement topography is extremely smooth in some areas and rough in others. At a few isolated locations, small volcanic edifices penetrate the sediment surface. An initial cruise in 1978 and two subsequent cruises in 1988 and 1990 on this sedimented ridge flank have produced extensive single-channel seismic coverage, detailed heat flow surveys co-located with seismic lines, and pore-fluid geochemical profiles of piston and gravity cores taken over heat flow anomalies. Complementary multichannel seismic reflection data were collected across the ridge crest and eastern flank in 1985 and 1989. Preliminary results of these studies provide important new information about hydrothermal circulation in ridge flank environments. Near areas of extensive basement outcrop, ventilated hydrothermal circulation in the upper igneous crust maintains temperatures of less than 10–20 °C; geochemically, basement fluids are virtually identical to seawater. Turbidite sediment forms an effective hydrologic and geochemical seal that restricts greatly any local exchange of fluid between the igneous crust and the ocean. Once sediment thickness reaches a few tens of metres, local vertical fluid flux through the sea floor is limited to rates of less than a few millimetres per year. Fluids and heat are transported over great distances laterally in the igneous crust beneath sediment however. Heat flow, basement temperatures, and basement fluid compositions are unaffected by ventilated circulation only where continuous sediment cover extends more than 15–20 km away from areas of extensive outcrop. Where small basement edifices penetrate the sediment cover in areas that are otherwise fully sealed, fluids discharge at rates sufficient to cause large heat flow and pore-fluid geochemical anomalies in the immediate vicinity of the outcrops. After complete sediment burial, hydrothermal circulation continues in basement. Estimated basement temperatures and, to the limited degree observed, fluid compositions are uniform over large areas despite large local variations in sediment thickness. Because of the resulting strong relationship between heat flow and sediment thickness, it is not possible, in most areas, to detect any systematic pattern of heat flow that might be associated with cellular hydrothermal circulation in basement. However, an exception to this occurs at one location where the sediment thickness is sufficiently uniform to allow detection of a systematic variation in heat flow that can probably be ascribed to cellular circulation. At that location, temperatures at the sediment–basement interface vary smoothly between about 40 and 50 °C, with a half-wavelength of about 700 m. A permeable-layer thickness of similar dimension is inferred by assuming that circulation is cellular with an aspect ratio of roughly one. This thickness is commensurate with the subbasement depth to a strong seismic reflector observed commonly in the region. Seismic velocities in the igneous crustal layer above this reflector have been observed to be low near the ridge crest and to increase significantly where the transition from ventilated to sealed hydrothermal conditions occurs, although no associated reduction in permeability can be ascertained from the thermal data.