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  • 1
    Publication Date: 2014-05-14
    Description: Maintenance of genomic stability is essential for normal organismal development and is vital to prevent diseases such as cancer. As genetic information is packaged into chromatin, it has become increasingly clear that the chromatin environment plays an important role in DNA damage response. However, how DNA repair is controlled by...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 2
    Publication Date: 2015-05-22
    Description: miR-23b-3p regulates the chemoresistance of gastric cancer cells by targeting ATG12 and HMGB2 Cell Death and Disease 6, e1766 (May 2015). doi:10.1038/cddis.2015.123 Authors: Y An, Z Zhang, Y Shang, X Jiang, J Dong, P Yu, Y Nie & Q Zhao
    Electronic ISSN: 2041-4889
    Topics: Biology , Medicine
    Published by Springer Nature
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  • 3
    Publication Date: 2015-04-09
    Description: Frequent natural hazards cause huge damage to human life and society in the mountainous regions along the eastern rim of the Tibetan Plateau. A massive landslide damming event has been reported in the Jishixia Gorge on the upper Yellow River as it emerges from the NE Tibetan Plateau. It was speculated that a breach of the dammed lake might have resulted in a super flood disaster that ruined the major Neolithic settlement at Lajia (4.20–3.95 ka BP) within the Guanting Basin that is located in the downstream. However, our detailed investigations along the Jishixia Gorge and Guanting Basin indicate that the dammed lake became shallower and desiccated gradually rather than breaching suddenly. The Yellow River has cut into the dammed lake deposits forming well-exposed profiles on the riverbanks. The dammed lake deposits are considered to provide an accurate natural record of the life-span of the dammed lake. Optically Stimulated Luminescence (OSL) dating was carried out on a series of eight samples taken from the profile. The OSL ages of the dammed lake deposits fall within the range of 8.25 ± 0.39 to 5.65 ± 0.21 ka at the Yisiri site about 2.5 km upstream of the landslide dam. These results indicate that the massive landslide damming event and the corresponding dammed lake occurred at 8.25 ka in the early Holocene. The dammed lake existed for about 2600 years and desiccated gradually and disappeared at 5.65 ka because the landslide dam was dissected slowly by the Yellow River. This means that the landslide dammed lake on the Yellow River disappeared about 1700 years before the Neolithic settlement at Lajia became ruins. The landslide damming event in the Jishixia Gorge is not related to the prehistorical catastrophic disasters that overcame the Lajia settlement within the Guanting Basin.
    Print ISSN: 0959-6836
    Electronic ISSN: 1477-0911
    Topics: Geography , Geosciences
    Published by Sage
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  • 4
    Publication Date: 2014-10-08
    Description: We describe herein a measurement of the Antarctic surface “roughness” performed by the balloon-borne ANITA (ANtarctic Impulsive Transient Antenna) experiment. Originally purposed for cosmic-ray astrophysics, the radio-frequency (RF) receiver ANITA gondola, from its 38 km altitude vantage point, can scan a disk of snow surface 600 km in radius. The primary purpose of ANITA is to detect RF emissions from cosmic rays incident on Antarctica, such as neutrinos which penetrate through the atmosphere and interact within the ice, resulting in signal directed upwards which then refracts at the ice-air interface and up and out to ANITA, or high-energy nuclei (most likely irons or protons), which interact in the upper atmosphere (at altitudes below ANITA) and produce a spray of down-coming RF which reflects off the snow surface and back up to the gondola. The energy of such high-energy nuclei can be inferred from the observed reflectedsignal only if the surface reflectivity is known. We describe herein an attempt to quantify the Antarctic surface reflectivity, using the Sun as a constant, unpolarized RF source. We find that the reflectivity of the surface generally follows the expectations from the Fresnel equations, lending support to the use of those equations to give an overall correction factor to calculate cosmic ray energies for all locations in Antarctica. The analysis described below is based on ANITA-II data. After launching from McMurdo Station in December, 2008, ANITA-II was aloft for a period of 31 days with a typical instantaneous duty cycle exceeding 95%.
    Print ISSN: 0048-6604
    Electronic ISSN: 1944-799X
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 5
    Publication Date: 2014-04-15
    Description: The ataxia telangiectasia mutated and Rad3-related (ATR)-checkpoint kinase 1 (Chk1) axis is the major signaling pathway activated in response to replication stress and is essential for the intra-S checkpoint. ATR phosphorylates and activates a number of molecules to coordinate cell cycle progression. Chk1 is the major effector downstream from ATR and plays a critical role in intra-S checkpoint on replication stress. Activation of Chk1 kinase also requires its association with Claspin, an adaptor protein essential for Chk1 protein stability, recruitment and ATR-dependent Chk1 phosphorylation. We have previously reported that, on replication stress, the catalytic subunit of DNA-dependent protein kinase (DNA-PKcs) is rapidly phosphorylated by ATR at the stalled replication forks and is required for cellular resistance to replication stresses although the impact of DNA-PKcs onto the ATR signaling pathway remains elusive. Here we report that ATR-dependent Chk1 phosphorylation and Chk1 signaling are compromised in the absence of DNA-PKcs. Our investigation reveals that DNA-PKcs is required to maintain Chk1–Claspin complex stability and transcriptional regulation of Claspin expression. The impaired Chk1 activity results in a defective intra-S checkpoint response in DNA-PKcs–deficient cells. Taken together, these results suggest that DNA-PKcs, in addition to its direct role in DNA damage repair, facilitates ATR-Chk1 signaling pathway in response to replication stress.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 6
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-03-30
    Description: Selective estrogen receptor modulators (SERMs) mimic estrogen action in certain tissues while opposing it in others. The therapeutic effectiveness of SERMs such as tamoxifen and raloxifene in breast cancer depends on their antiestrogenic activity. In the uterus, however, tamoxifen is estrogenic. Here, we show that both tamoxifen and raloxifene induce the recruitment of corepressors to target gene promoters in mammary cells. In endometrial cells, tamoxifen, but not raloxifene, acts like estrogen by stimulating the recruitment of coactivators to a subset of genes. The estrogen-like activity of tamoxifen in the uterus requires a high level of steroid receptor coactivator 1 (SRC-1) expression. Thus cell type- and promoter-specific differences in coregulator recruitment determine the cellular response to SERMs.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shang, Yongfeng -- Brown, Myles -- CA57374/CA/NCI NIH HHS/ -- New York, N.Y. -- Science. 2002 Mar 29;295(5564):2465-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Adult Oncology, Dana-Farber Cancer Institute, 44 Binney Street, and Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11923541" target="_blank"〉PubMed〈/a〉
    Keywords: Breast/*drug effects/metabolism ; Breast Neoplasms/genetics/metabolism ; Cell Cycle ; DNA-Binding Proteins/metabolism ; Endometrial Neoplasms/genetics/metabolism ; Endometrium/*drug effects/metabolism ; Estradiol/pharmacology ; Female ; Gene Expression Regulation/drug effects ; Gene Silencing ; Genes, myc ; Histone Acetyltransferases ; Histone Deacetylases/metabolism ; Humans ; Insulin-Like Growth Factor I/genetics ; Nuclear Receptor Coactivator 1 ; Organ Specificity ; Promoter Regions, Genetic ; Raloxifene Hydrochloride/metabolism/*pharmacology ; Receptors, Estrogen/chemistry/metabolism ; Repressor Proteins/metabolism ; Response Elements ; Selective Estrogen Receptor Modulators/metabolism/*pharmacology ; Tamoxifen/metabolism/*pharmacology ; Transcription Factors/genetics/*metabolism ; Transcription, Genetic ; Tumor Cells, Cultured
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2010-12-04
    Description: Synaptic plasticity is a key mechanism for chronic pain. It occurs at different levels of the central nervous system, including spinal cord and cortex. Studies have mainly focused on signaling proteins that trigger these plastic changes, whereas few have addressed the maintenance of plastic changes related to chronic pain. We found that protein kinase M zeta (PKMzeta) maintains pain-induced persistent changes in the mouse anterior cingulate cortex (ACC). Peripheral nerve injury caused activation of PKMzeta in the ACC, and inhibiting PKMzeta by a selective inhibitor, zeta-pseudosubstrate inhibitory peptide (ZIP), erased synaptic potentiation. Microinjection of ZIP into the ACC blocked behavioral sensitization. These results suggest that PKMzeta in the ACC acts to maintain neuropathic pain. PKMzeta could thus be a new therapeutic target for treating chronic pain.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Li, Xiang-Yao -- Ko, Hyoung-Gon -- Chen, Tao -- Descalzi, Giannina -- Koga, Kohei -- Wang, Hansen -- Kim, Susan S -- Shang, Yuze -- Kwak, Chuljung -- Park, Soo-Won -- Shim, Jaehoon -- Lee, Kyungmin -- Collingridge, Graham L -- Kaang, Bong-Kiun -- Zhuo, Min -- CIHR66975/Canadian Institutes of Health Research/Canada -- CIHR84256/Canadian Institutes of Health Research/Canada -- G0601813/Medical Research Council/United Kingdom -- Medical Research Council/United Kingdom -- New York, N.Y. -- Science. 2010 Dec 3;330(6009):1400-4. doi: 10.1126/science.1191792.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physiology, Faculty of Medicine, Center for the Study of Pain, University of Toronto, 1 King's College Circle, Toronto, Ontario M5S 1A8, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21127255" target="_blank"〉PubMed〈/a〉
    Keywords: Adenylyl Cyclases/genetics/metabolism ; Analgesics/administration & dosage/pharmacology ; Animals ; Enzyme Inhibitors/administration & dosage/*pharmacology ; Excitatory Postsynaptic Potentials/drug effects ; Gyrus Cinguli/*enzymology/physiology ; Long-Term Potentiation ; Male ; Memory/drug effects ; Mice ; Mice, Inbred C57BL ; Mice, Transgenic ; Neuralgia/*drug therapy/*enzymology ; Patch-Clamp Techniques ; Peptides/administration & dosage/*pharmacology ; Peroneal Nerve/injuries ; Phosphorylation ; Protein Kinase C/*antagonists & inhibitors/*metabolism ; Receptors, AMPA/metabolism ; Sensory Receptor Cells/physiology ; Somatosensory Cortex/physiology ; Synapses/physiology ; Synaptic Transmission
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 8
    Publication Date: 2014-11-29
    Description: Cucurbitacins are triterpenoids that confer a bitter taste in cucurbits such as cucumber, melon, watermelon, squash, and pumpkin. These compounds discourage most pests on the plant and have also been shown to have antitumor properties. With genomics and biochemistry, we identified nine cucumber genes in the pathway for biosynthesis of cucurbitacin C and elucidated four catalytic steps. We discovered transcription factors Bl (Bitter leaf) and Bt (Bitter fruit) that regulate this pathway in leaves and fruits, respectively. Traces in genomic signatures indicated that selection imposed on Bt during domestication led to derivation of nonbitter cucurbits from their bitter ancestors.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shang, Yi -- Ma, Yongshuo -- Zhou, Yuan -- Zhang, Huimin -- Duan, Lixin -- Chen, Huiming -- Zeng, Jianguo -- Zhou, Qian -- Wang, Shenhao -- Gu, Wenjia -- Liu, Min -- Ren, Jinwei -- Gu, Xingfang -- Zhang, Shengping -- Wang, Ye -- Yasukawa, Ken -- Bouwmeester, Harro J -- Qi, Xiaoquan -- Zhang, Zhonghua -- Lucas, William J -- Huang, Sanwen -- New York, N.Y. -- Science. 2014 Nov 28;346(6213):1084-8. doi: 10.1126/science.1259215.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 100081, China. Agricultural Genomic Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518124, China. ; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 100081, China. College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China. ; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 100081, China. Horticulture and Landscape College, Hunan Agricultural University, National Chinese Medicinal Herbs Technology Center, Changsha 410128, China. ; Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. ; Hunan Vegetable Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China. ; Horticulture and Landscape College, Hunan Agricultural University, National Chinese Medicinal Herbs Technology Center, Changsha 410128, China. ; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 100081, China. ; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 100081, China. College of Life Sciences, Wuhan University, Wuhan 430072, China. ; Institute of Microbiology, Chinese Academy of Sciences, Beijing 100190, China. ; School of Pharmacy, Nihon University, Tokyo 101-8308, Japan. ; Laboratory of Plant Physiology, Wageningen University, Wageningen 6700, Netherlands. ; Department of Plant Biology, College of Biological Sciences, University of California, Davis, CA 95616, USA. ; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 100081, China. Agricultural Genomic Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518124, China. huangsanwen@caas.cn.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25430763" target="_blank"〉PubMed〈/a〉
    Keywords: Base Sequence ; Cucumis sativus/genetics/*metabolism ; Fruit/genetics/*metabolism ; Gene Expression Regulation, Plant ; Genome, Plant ; Molecular Sequence Data ; Plant Leaves/genetics/*metabolism ; Plant Proteins/genetics/*metabolism ; *Taste ; Transcription Factors/genetics/*metabolism ; Triterpenes/chemical synthesis/*metabolism
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 9
    Publication Date: 2017-02-24
    Description: We introduce an open-source MATLAB software package, named Crazyseismic, for passive seismic data preprocessing. Built-in core functions such as seismic phase travel-time calculation and multichannel cross correlation significantly improve the efficiency of data processing. Compared with conventional command-line-style toolboxes, all functions in Crazyseismic are embedded in one single graphic user interface (GUI). The human–machine interactive nature of GUI facilitates data quality control. The simplicity of the software allows users to process Seismic Analysis Code format seismic data with great ease and also provides a means by which users can tailor the software for their specific needs. We demonstrate the power of our software through two field examples: one for P -wave arrival-time picking and the other for receiver function calculation. The software can essentially be used for analyzing all major body-wave phases in seismology.
    Print ISSN: 0895-0695
    Electronic ISSN: 1938-2057
    Topics: Geosciences
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  • 10
    Publication Date: 2016-08-21
    Description: Using all the RXTE archival data of Sco X-1 and GX 5-1, which amount to about 1.6 Ms in total, we searched for possible occultation events caused by Oort Cloud objects. The detection efficiency of our searching approach was studied with simulation. Our search is sensitive to object size of about 300 m in the inner Oort Cloud, taking 4000 au as a representative distance, and of 900 m in the outer Oort Cloud, taking 36 000 au as the representative distance. No occultation events were found in the 1.6 Ms data. We derived upper limits to the number of Oort Cloud objects, which are about three orders of magnitude higher than the highest theoretical estimates in the literature for the inner Oort Cloud, and about six orders higher for the outer Oort Cloud. Although these upper limits are not constraining enough, they are the first obtained observationally, without making any model assumptions about comet injection. They also provide guidance to such serendipitous occultation event search in the future.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
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