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  • 1
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology reviews 28 (2004), S. 0 
    ISSN: 1574-6976
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The finding that total viral abundance is higher than total prokaryotic abundance and that a significant fraction of the prokaryotic community is infected with phages in aquatic systems has stimulated research on the ecology of prokaryotic viruses and their role in ecosystems. This review treats the ecology of prokaryotic viruses (`phages') in marine, freshwater and soil systems from a `virus point of view'. The abundance of viruses varies strongly in different environments and is related to bacterial abundance or activity suggesting that the majority of the viruses found in the environment are typically phages. Data on phage diversity are sparse but indicate that phages are extremely diverse in natural systems. Lytic phages are predators of prokaryotes, whereas lysogenic and chronic infections represent a parasitic interaction. Some forms of lysogeny might be described best as mutualism. The little existing ecological data on phage populations indicate a large variety of environmental niches and survival strategies. The host cell is the main resource for phages and the resource quality, i.e., the metabolic state of the host cell, is a critical factor in all steps of the phage life cycle. Virus-induced mortality of prokaryotes varies strongly on a temporal and spatial scale and shows that phages can be important predators of bacterioplankton. This mortality and the release of cell lysis products into the environment can strongly influence microbial food web processes and biogeochemical cycles. Phages can also affect host diversity, e.g., by `killing the winner' and keeping in check competitively dominant species or populations. Moreover, they mediate gene transfer between prokaryotes, but this remains largely unknown in the environment. Genomics or proteomics are providing us now with powerful tools in phage ecology, but final testing will have to be performed in the environment.
    Type of Medium: Electronic Resource
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  • 2
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    PANGAEA
    In:  Laboratoire d'Océanographie de Villefranche
    Publication Date: 2023-05-12
    Keywords: BIOACID; Biological Impacts of Ocean Acidification; EPOCA; European Project on Ocean Acidification; Experimental treatment; Experiment day; Terminal restriction fragment area; Terminal restriction fragment position
    Type: Dataset
    Format: text/tab-separated-values, 295740 data points
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  • 3
    Publication Date: 2023-07-05
    Keywords: ANT-XVIII/2; Bacteria; BONGO; Bongo net; CTD/Rosette; CTD1; CTD120; CTD127; CTD14a; CTD4; CTD44; CTD48; CTD50; CTD53; CTD60; CTD65; CTD69; CTD73; CTD87; CTD9; CTD-RO; Date/Time of event; DEPTH, water; EisenEx; Elevation of event; European Iron Enrichment Experiment in the Southern Ocean; Event label; Latitude of event; Leucine incorporation rate; Longitude of event; Polarstern; PS58/003-1; PS58/006-1; PS58/009-2; PS58/011-1; PS58/012-1; PS58/038-1; PS58/039-1; PS58/041-1; PS58/042-1; PS58/045-1; PS58/046-1; PS58/048-1; PS58/049-1; PS58/061-1; PS58/088-1; PS58/090-1; PS58/092-1; PS58/107-1; PS58 EISENEX; Ring net; RN; South Atlantic; Thymidine incorporation rate; Viral abundance
    Type: Dataset
    Format: text/tab-separated-values, 335 data points
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  • 4
    Publication Date: 2024-03-15
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Ammonium; Animalia; Aragonite saturation state; Benthic animals; Benthos; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Buoyant mass; Calcification/Dissolution; Calcification rate; Calcification rate of calcium carbonate; Calcification rate of calcium carbonate per polyp; Calcite saturation state; Calculated using seacarb; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cnidaria; Deep-sea; Desmophyllum sp.; EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Identification; Incubation duration; Laboratory experiment; Lacaze_Duthiers; Lophelia pertusa; Madrepora oculata; Mass; Mediterranean Sea; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Phosphate; Polyp number; Respiration; Respiration rate, oxygen; Salinity; Single species; Species; Temperate; Temperature, water; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 14120 data points
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  • 5
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    PANGAEA
    In:  Supplement to: Maier, Cornelia; Hegeman, Jan; Weinbauer, Markus G; Gattuso, Jean-Pierre (2009): Calcification of the cold-water coral Lophelia pertusa under ambient and reduced pH. Biogeosciences, 6(8), 1671-1680, https://doi.org/10.5194/bg-6-1671-2009
    Publication Date: 2024-03-15
    Description: The cold-water coral Lophelia pertusa is one of the few species able to build reef-like structures and a 3-dimensional coral framework in the deep oceans. Furthermore, deep cold-water coral bioherms may be among the first marine ecosystems to be affected by ocean acidification. Colonies of L. pertusa were collected during a cruise in 2006 to cold-water coral bioherms of the Mingulay reef complex (Hebrides, North Atlantic). Shortly after sample collection onboard these corals were labelled with calcium-45. The same experimental approach was used to assess calcification rates and how those changed due to reduced pH during a cruise to the Skagerrak (North Sea) in 2007. The highest calcification rates were found in youngest polyps with up to 1% d-1 new skeletal growth and average rates of 0.11±0.02% d-1±S.E.). Lowering pH by 0.15 and 0.3 units relative to the ambient level resulted in calcification being reduced by 30 and 56%. Lower pH reduced calcification more in fast growing, young polyps (59% reduction) than in older polyps (40% reduction). Thus skeletal growth of young and fast calcifying corallites suffered more from ocean acidification. Nevertheless, L. pertusa exhibited positive net calcification (as measured by 45Ca incorporation) even at an aragonite saturation state below 1.
    Keywords: Alkalinity, total; Animalia; Aragonite saturation state; Benthic animals; Benthos; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcification/Dissolution; Calcification rate; Calcite saturation state; Calcium; Calculated using seacarb; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cnidaria; Coast and continental shelf; Date; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Experimental treatment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Laboratory experiment; Lophelia pertusa; Lophelia pertusa, skeleton, dry weight; Lophelia pertusa, tissue, dry weight; Measured; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Salinity; Sample ID; see reference(s); Single species; Species; Temperate; Temperature, water; Time in days
    Type: Dataset
    Format: text/tab-separated-values, 7748 data points
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  • 6
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    PANGAEA
    In:  Supplement to: Maier, Cornelia; Popp, Pauline; Sollfrank, Nicole; Weinbauer, Markus G; Wild, Christian; Gattuso, Jean-Pierre (2016): Effects of elevated pCO2 and feeding on net calcification and energy budget of the Mediterranean cold-water coral Madrepora oculata. Journal of Experimental Biology, 219(20), 3208-3217, https://doi.org/10.1242/jeb.127159
    Publication Date: 2024-03-15
    Description: Ocean acidification is a major threat to calcifying marine organisms such as deep-sea cold-water corals (CWC), but related knowledge is scarce. The aragonite saturation threshold (Omega a) for calcification, respiration, and organic matter fluxes was investigated experimentally in the Mediterranean Madrepora oculata (Linnaeus 1758). Over 10 weeks, colonies were maintained under two feeding regimes (uptake of 36.75 and 7.46 µmol C/polyp/week) and exposed in 2 week intervals to a consecutively changing air-CO2 mix (pCO2) of 400, 1600, 800, 2000 and 400 ppm. There was a significant effect of feeding on calcification at initial ambient pCO2, while at consecutive pCO2 treatments feeding had no effect on calcification. Respiration was not significantly affected by feeding or pCO2 levels. Coral skeletons started to dissolve at an average Omega a threshold of 0.92, but recovered and started to calcify again at Omega a〉 or =1. The surplus energy required to counteract dissolution at elevated pCO2 (〉 or =1600µatm) was twice that at ambient pCO2. Yet, feeding had no mitigating effect at increasing pCO2 levels. This could be due to the fact that the energy required for calcification is a small fraction (1 to 3%) of the total metabolic energy demand and corals even under low food conditions might therefore still be able to allocate this small portion of energy to calcification. The response and resistance to ocean acidification is consequently not controlled by feeding in this species, but more likely by chemical reaction at the site of calcification and exchange processes between the calicoblastic layer and ambient seawater.
    Keywords: Alkalinity, total; Animalia; Aragonite saturation state; Area; Bari_Canyon_OA; Benthic animals; Benthos; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcification/Dissolution; Calcification rate; Calcification rate of calcium carbonate; Calcite saturation state; Calculated using seacarb; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, organic, total, change rate; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cnidaria; Coral; Deep-sea; Dry mass; EXP; Experiment; Feeding mode; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gas, flux; Growth/Morphology; Incubation duration; Laboratory experiment; Madrepora oculata; Mediterranean Sea; OA-ICC; Ocean Acidification International Coordination Centre; Other; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Particulate organic carbon uptake rate; Percentage; pH; Polyp number; Pressure; Registration number of species; Respiration; Respiration rate, oxygen; Respiratory quotient; Salinity; Sample code/label; Sample type; Sampling date; Single species; Species; Temperate; Temperature, water; Treatment; Type; Uniform resource locator/link to reference; Volume
    Type: Dataset
    Format: text/tab-separated-values, 11229 data points
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  • 7
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    PANGAEA
    In:  Supplement to: Maier, Cornelia; Watremez, P; Taviani, Marco; Weinbauer, Markus G; Gattuso, Jean-Pierre (2012): Calcification rates and the effect of ocean acidification on Mediterranean cold-water corals. Proceedings of the Royal Society B-Biological Sciences, 279(1734), 1716-1723, https://doi.org/10.1098/rspb.2011.1763
    Publication Date: 2024-03-15
    Description: Global environmental changes, including ocean acidification, have been identified as a major threat to scleractinian corals. General predictions are that ocean acidification will be detrimental to reef growth and that 40 to more than 80 per cent of present-day reefs will decline during the next 50 years. Cold-water corals (CWCs) are thought to be strongly affected by changes in ocean acidification owing to their distribution in deep and/or cold waters, which naturally exhibit a CaCO3 saturation state lower than in shallow/warm waters. Calcification was measured in three species of Mediterranean cold-water scleractinian corals (Lophelia pertusa, Madrepora oculata and Desmophyllum dianthus) on-board research vessels and soon after collection. Incubations were performed in ambient sea water. The species M. oculata was additionally incubated in sea water reduced or enriched in CO2. At ambient conditions, calcification rates ranged between -0.01 and 0.23% d-1. Calcification rates of M. oculata under variable partial pressure of CO2 (pCO2) were the same for ambient and elevated pCO2 (404 and 867 µatm) with 0.06 ± 0.06% d-1, while calcification was 0.12 ± 0.06% d-1 when pCO2 was reduced to its pre-industrial level (285 µatm). This suggests that present-day CWC calcification in the Mediterranean Sea has already drastically declined (by 50%) as a consequence of anthropogenic-induced ocean acidification.
    Keywords: AIRICA analyzer (Miranda); Alkalinity, total; Alkalinity, total, standard deviation; Alkalinity anomaly technique (Smith and Key, 1975); Ammonium; Ammonium, standard deviation; Animalia; Aragonite saturation state; Benthic animals; Benthos; Bicarbonate ion; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Calcification/Dissolution; Calcification rate; Calcification rate, standard deviation; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cnidaria; Coral polyp; Coral polyp, standard deviation; Deep-sea; Desmophyllum sp.; Desmophyllum sp., dry weight; Desmophyllum sp., dry weight, standard deviation; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Experiment day; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Identification; Laboratory experiment; Lophelia pertusa; Lophelia pertusa, tissue, dry weight; Lophelia pertusa, tissue, dry weight, standard error; Madrepora oculata; Madrepora oculata, dry weight; Madrepora oculata, dry weight, standard deviation; Measured; Mediterranean Sea; Metrohm Titrando titrator; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Phosphate; Phosphate, standard deviation; Replicates; Salinity; Single species; Site; Species; Temperate; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 608 data points
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  • 8
    Publication Date: 2015-05-01
    Print ISSN: 0079-6611
    Electronic ISSN: 1873-4472
    Topics: Geosciences , Physics
    Published by Elsevier
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  • 9
  • 10
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