ALBERT

Description: Sun-induced chlorophyll fluorescence (SIF) retrieved from satellite spectrometers can be a highly valuable proxy for photosynthesis. The SIF signal is very small and notoriously difficult to measure, requiring sub-nanometre spectral-resolution measurements, which to date are only available from atmospheric spectrometers sampling at low spatial resolution. For example, the widely used SIF dataset derived from the GOME-2 mission is typically provided in 0.5∘ composites. This paper presents a new SIF dataset based on GOME-2 satellite observations with an enhanced spatial resolution of 0.05∘ and an 8 d time step covering the period 2007–2018. It leverages on a proven methodology that relies on using a light-use efficiency (LUE) modelling approach to establish a semi-empirical relationship between SIF and various explanatory variables derived from remote sensing at higher spatial resolution. An optimal set of explanatory variables is selected based on an independent validation with OCO-2 SIF observations, which are only sparsely available but have a high accuracy and spatial resolution. After bias correction, the resulting downscaled SIF data show high spatio-temporal agreement with the first SIF retrievals from the new TROPOMI mission, opening the path towards establishing a surrogate archive for this promising new dataset. We foresee this new SIF dataset becoming a valuable asset for Earth system science in general and for monitoring vegetation productivity in particular. The dataset is available at https://doi.org/10.2905/21935FFC-B797-4BEE-94DA-8FEC85B3F9E1 (Duveiller et al., 2019).

Description: High-latitude treeless ecosystems represent spatially highly heterogeneous landscapes with small net carbon fluxes and a short growing season. Reliable observations and process understanding are critical for projections of the carbon balance of the climate-sensitive tundra. Space-borne remote sensing is the only tool to obtain spatially continuous and temporally resolved information on vegetation greenness and activity in remote circumpolar areas. However, confounding effects from persistent clouds, low sun elevation angles, numerous lakes, widespread surface inundation, and the sparseness of the vegetation render it highly challenging. Here, we conduct an extensive analysis of the timing of peak vegetation productivity as shown by satellite observations of complementary indicators of plant greenness and photosynthesis. We choose to focus on productivity during the peak of the growing season, as it importantly affects the total annual carbon uptake. The suite of indicators are as follows: (1) MODIS-based vegetation indices (VIs) as proxies for the fraction of incident photosynthetically active radiation (PAR) that is absorbed (fPAR), (2) VIs combined with estimates of PAR as a proxy of the total absorbed radiation (APAR), (3) sun-induced chlorophyll fluorescence (SIF) serving as a proxy for photosynthesis, (4) vegetation optical depth (VOD), indicative of total water content and (5) empirically upscaled modelled gross primary productivity (GPP). Averaged over the pan-Arctic we find a clear order of the annual peak as APAR ≦ GPP

Description: Sun-induced chlorophyll fluorescence (SIF) retrieved from satellite spectrometers can be a highly valuable proxy for photosynthesis. The SIF signal is very small and notoriously difficult to measure, requiring sub-nanometer spectral resolution measurements, which to-date are only available from atmospheric spectrometers sampling at coarse spatial resolution. For example, the widely used SIF dataset derived from the GOME-2 mission is typically provided in 0.5 decimal degree composites. This paper presents a new SIF dataset based on GOME-2 satellite observations with an enhanced spatial resolution of 0.05 decimal degrees and an 8-day time step covering the period 2007–2018. It leverages on a proven methodology that relies on using a light use efficiency (LUE) modelling approach to establishing a semi-empirical relationship between SIF and various explanatory variables derived from remote sensing at finer spatial resolution. An optimal set of explanatory variables is selected based on an independent validation with OCO-2 SIF observations, which are only sparsely available but have a high accuracy and spatial resolution. After a bias-correction, the resulting downscaled SIF data shows high spatio-temporal agreement with the first SIF retrievals from the new TROPOMI mission, opening the path towards establishing a surrogate archive for this promising new dataset. We foresee that this new SIF dataset should be a valuable asset for Earth System Science in general, and for monitoring vegetation productivity in particular. The dataset is available at: https://doi.org/10.2905/21935FFC-B797-4BEE-94DA-8FEC85B3F9E1 (Duveiller et al., 2019).

Description: High latitude treeless ecosystems represent spatially highly heterogeneous landscapes with small net carbon fluxes and a short growing season. Reliable observations and process understanding are critical for projections of the carbon balance of climate sensitive tundra. Spaceborne remote sensing is the only tool to obtain spatially continuous and temporally resolved information on vegetation greenness and activity in remote circumpolar areas. However, confounding effects from persistent clouds, low sun elevation angles, numerous lakes, widespread surface inundation, and the sparseness of the vegetation render it highly challenging. Productivity during the peak of the growing season importantly affects the total annual carbon uptake. Here, we conduct an extensive analysis of the timing of peak vegetation productivity as shown by satellite observations of complementary indicators of plant greenness and photosynthesis. The suite of indicators are: (1) MODIS-based vegetation indices (VIs) as proxies of the fraction of absorbed photosynthetically radiation; (2) VIs combined with estimates of absorbed photosynthetically active radiation (APAR); (3) sun-induced chlorophyll fluorescence (SIF) serving as a proxy for photosynthesis; (4) vegetation optical depth (VOD), indicative of total water content; and (5) empirically upscaled modelled gross primary productivity (GPP). Averaged over the pan-Arctic we find a clear order of the annual peak as APAR 〈 GPP 〈 SIF 〈 VIs/VOD. SIF as an indicator of photosynthesis is maximized around the time of highest annual temperatures. Model GPP peaks at a similar time like APAR. The time lag of the annual peak between APAR and instantaneous SIF fluxes indicates that the SIF data do contain information on light-use efficiency of tundra vegetation, but further detailed studies are necessary to verify this. Delayed peak greenness compared to peak photosynthesis is consistently found across years and land cover classes. A particularly late peak of NDVI in regions with very small seasonality in greenness and a high amount of lakes probably originates from artefacts. Given the very short growing season in circumpolar areas, the average time difference in maximum annual photosynthetic activity and greenness/growth of 3 to 25 days (depending on the data sets chosen) is important and needs to be considered when using satellite observations as drivers in vegetation models.

Description: Interannual variations in ecosystem primary productivity are dominated by water availability. Until recently, characterizing the photosynthetic response of different ecosystems to soil moisture anomalies was hampered by observational limitations. Here, we use a number of satellite-based proxies for productivity, including spectral indices, sun-induced chlorophyll fluorescence, and data-driven estimates of gross primary production, to reevaluate the relationship between terrestrial photosynthesis and water. In contrast to nonwoody vegetation, we find a resilience of forested ecosystems to reduced soil moisture. Sun-induced chlorophyll fluorescence and data-driven gross primary production indicate an increase in photosynthesis as a result of the accompanying higher amounts of light and temperature despite lowered light-use-efficiency. Conversely, remote sensing indicators of greenness reach their detection limit and largely remain stable. Our study thus highlights the differential responses of ecosystems along a tree cover gradient and illustrates the importance of differentiating photosynthesis indicators from those of greenness for the monitoring and understanding of ecosystems. ©2019. American Geophysical Union. All Rights Reserved.

Description: FLUXNET comprises globally distributed eddy-covariance-based estimates of carbon fluxes between the biosphere and the atmosphere. Since eddy covariance flux towers have a relatively small footprint and are distributed unevenly across the world, upscaling the observations is necessary to obtain global-scale estimates of biosphere–atmosphere exchange. Based on cross-consistency checks with atmospheric inversions, sun-induced fluorescence (SIF) and dynamic global vegetation models (DGVMs), here we provide a systematic assessment of the latest upscaling efforts for gross primary production (GPP) and net ecosystem exchange (NEE) of the FLUXCOM initiative, where different machine learning methods, forcing data sets and sets of predictor variables were employed. Spatial patterns of mean GPP are consistent across FLUXCOM and DGVM ensembles (R2〉0.94 at 1∘ spatial resolution) while the majority of DGVMs show, for 70 % of the land surface, values outside the FLUXCOM range. Global mean GPP magnitudes for 2008–2010 from FLUXCOM members vary within 106 and 130 PgC yr−1 with the largest uncertainty in the tropics. Seasonal variations in independent SIF estimates agree better with FLUXCOM GPP (mean global pixel-wise R2∼0.75) than with GPP from DGVMs (mean global pixel-wise R2∼0.6). Seasonal variations in FLUXCOM NEE show good consistency with atmospheric inversion-based net land carbon fluxes, particularly for temperate and boreal regions (R2〉0.92). Interannual variability of global NEE in FLUXCOM is underestimated compared to inversions and DGVMs. The FLUXCOM version which also uses meteorological inputs shows a strong co-variation in interannual patterns with inversions (R2=0.87 for 2001–2010). Mean regional NEE from FLUXCOM shows larger uptake than inversion and DGVM-based estimates, particularly in the tropics with discrepancies of up to several hundred grammes of carbon per square metre per year. These discrepancies can only partly be reconciled by carbon loss pathways that are implicit in inversions but not captured by the flux tower measurements such as carbon emissions from fires and water bodies. We hypothesize that a combination of systematic biases in the underlying eddy covariance data, in particular in tall tropical forests, and a lack of site history effects on NEE in FLUXCOM are likely responsible for the too strong tropical carbon sink estimated by FLUXCOM. Furthermore, as FLUXCOM does not account for CO2 fertilization effects, carbon flux trends are not realistic. Overall, current FLUXCOM estimates of mean annual and seasonal cycles of GPP as well as seasonal NEE variations provide useful constraints of global carbon cycling, while interannual variability patterns from FLUXCOM are valuable but require cautious interpretation. Exploring the diversity of Earth observation data and of machine learning concepts along with improved quality and quantity of flux tower measurements will facilitate further improvements of the FLUXCOM approach overall.

Description: Despite the critical importance of photosynthesis for the Earth system, understanding how it is influenced by factors such as climate variability, disturbance history, and water or nutrient availability remains a challenge because of the complex interactions and the lack of GPP measurements at various temporal and spatial scales. Space observations of the sun-induced chlorophyll fluorescence (SIF) electromagnetic signal emitted by plants in the 650-850nm spectral range hold the promise of providing a new view of vegetation photosynthesis on a global basis. Global retrievals of SIF from space have recently been achieved from a number of spaceborne spectrometers originally intended for atmospheric research. Despite not having been designed for land applications, such instruments have turned out to provide the necessary spectral and radiometric sensitivity for SIF retrieval from space. The first global measurements of SIF were achieved in 2011 from spectra acquired by the Japanese GOSAT mission launched in 2009. The retrieval takes advantage of the high spectral resolution provided by GOSATs Fourier Transform Spectrometer (FTS) which allows the evaluation of the in-filling of solar Fraunhofer lines by SIF. Unfortunately, GOSAT only provides a sparse spatial sampling with individual soundings separated by several hundred kilometers. Complementary, the Global Ozone Monitoring Experiment-2 (GOME-2) instruments onboard MetOp-A and MetOp-B enable SIF retrievals since 2007 with a continuous and global spatial coverage. GOME-2 measures in the red and near-infrared (NIR) spectral regions with a spectral resolution of 0.5 nm and a pixel size of up to 40x40 km2. Most recently, another global and spatially continuous data set of SIF retrievals at 740 nm spanning the 2003-2012 time frame has been produced from ENVISATSCIAMACHY. This observational scenario has been completed by the first fluorescence data from the NASA-JPL OCO-2 mission (launched in July 2014) and the upcoming Copernicus' Sentinel 5-Precursor to be launched in early 2016. OCO-2 and TROPOMI offer the possibility of monitoring SIF globally with a 100-fold improvement in spatial and temporal resolution with respect to the current measurements from the GOSAT, GOME-2 and SCIAMACHY missions. In this contribution, we will provide an overview of existing global SIF data sets derived from space-based atmospheric spectrometers and will demonstrate the potential of such data to improve our knowledge of vegetation photosynthesis and gross primary production at the synoptic scale. We will show examples of ongoing research exploiting SIF data for an improved monitoring of photosynthetic activity in different ecosystems, including large crop belts worldwide, the Amazon rainforest and boreal evergreen forests.