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  • 1
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Biochemistry 14 (1975), S. 1643-1647 
    ISSN: 1520-4995
    Source: ACS Legacy Archives
    Topics: Biology , Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Journal of molecular evolution 5 (1975), S. 75-85 
    ISSN: 1432-1432
    Keywords: Black Fly Phylogeny ; DNA Hybridization ; DNA Reassociation ; DNA Iodination ; Unique DNA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The phylogenetic relationships of six species of black flies were investigated using the hybridization of iodinated unique DNA sequences. The thermal stability of these labelled hybrids allowed the construction of a phylogenetic tree based on base mismatch between chains of the heterologous duplex.
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  • 3
    Electronic Resource
    Electronic Resource
    Copenhagen : International Union of Crystallography (IUCr)
    Acta crystallographica 51 (1995), S. 318-330 
    ISSN: 1399-0047
    Source: Crystallography Journals Online : IUCR Backfile Archive 1948-2001
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Notes: The oxidized recombinant flavodoxin from the cyanobacterium Anabaena 7120 has been crystallized in a trigonal form. The recombinant protein has an identical primary structure to that purified directly from Anabaena, which functions as a substitute for ferredoxin in an iron-deficient environment for electron transfer from photosystem I to ferredoxin–NADP+ reductase. X-ray data to 1.40 Å were collected on a Siemens area detector. Of the 311 379 reflections collected, 36069 reflections were unique in space group P3121 (a = 55.36, c = 102.59 Å) with an Rmerge of 3.8%. The structure was solved by molecular replacement using coordinates from the wild-type monoclinic structure previously solved in this laboratory [Rao, Shaffie, Yu, Satyshur, Stockman & Markley (1992). Protein Sci. 1, 1413–1427]. The structure was refined with X-PLOR and SHELXL93 to a crystallographic R-factor of 13.9% for 32963 reflections with I〉 2σ(I). The final structure contains 2767 atoms including 31 flavin mononucleotide (FMN) atoms, 299 water molecules, and one sulfate ion. The protein is comprised of a central five-stranded β-sheet surrounded by five helices and binds a single molecule of FMN at the C-terminus of the sheet. The trigonal protein structure and the crystal packing are compared with the monoclinic wild-type protein. Helix α3 in this structure is less distorted than in the monoclinic structure and shows additional hydrogen bonds in the N-terminal portion of the helix. The trigonal structure is extensively hydrogen bonded in three major areas with neighboring molecules compared with five regions in the monoclinic structure, but using significantly fewer hydrogen bonds to stabilize the lattice. There are several hydrogen bonds to the amide groups from water molecules several of which stabilize and extend the ends of the β-sheet.
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  • 4
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    BBA Section Nucleic Acids And Protein Synthesis 477 (1977), S. 288-294 
    ISSN: 0005-2787
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Experimental Mycology 7 (1983), S. 127-132 
    ISSN: 0147-5975
    Keywords: Agaricus bisporus ; Basidiomycetes ; DNA reassociation ; characterization of genome
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Physiologia plantarum 80 (1990), S. 0 
    ISSN: 1399-3054
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Transcripts for thylakoid proteins encoded in the chloroplast genome that show decreased synthesis in senescing primary leaves of bean (Phaseolus vulgaris) have been examined by Northern and dot blot analyses. In young, 7-day-old leaves pulse-labelled with 35S-methionine, all of the major chloroplast DNA-encoded thylakoid proteins become radiolabelled, including the 68 kDa protein of PSI encoded by psaAl and psbA2, the D-1, D-2, CP47 and CP43 proteins of PSII encoded by psbA, psbD, psbB, and psbC, respectively, and cytochrome f and cytochrome b6 encoded by petA and petB, respectively. By contrast, in pulse-labelled, senescent 28-day-old leaves, the only chloroplast-encoded thylakoid protein showing active synthesis is the D-1 protein of PSII. Total RNA levels decline by ≅ 9 fold between 7 and 28 days on a fresh weight basis. Dot blot analyses using gene-specific hybridization probes indicate that steady state transcript levels for all of the chloroplast DNA-encoded proteins examined maintain the same proportion of total RNA over this period. This means that these transcripts also decline by =9 fold between 7 and 28 days. Thus, reduced synthesis of the 68 kDa protein of PSI, the CP47 and CP43 proteins of PSII, cytochrome f and cytochrome b6 can presumably be attributed, at least in part, to a decline in steady state levels of corresponding message. It is apparent from Northern blot hybridizations that there are also qualitative changes in transcript pattern for petA, psbC and psbD between 7 and 28 days that perhaps reflect alterations in post-transcriptional processing. These alterations may also contribute to the decreased synthesis of the CP43 protein and cytochrome f. The continued active synthesis of the D-1 protein of PSII in the senescent 28-day-old leaves, despite the =9 fold decrease in the steady state level of its transcript, suggests that the psbA transcript is preferentially translated relative to transcripts for other chloroplastencoded thylakoid proteins.
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 73 (1987), S. 357-363 
    ISSN: 1432-2242
    Keywords: Triazine resistance ; psbA gene ; Nucleotide sequence ; Canola
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The nucleotide sequence for the psbA gene from a triazine resistant cultivar of B. napus (cv ‘Triton’) has been determined. This gene encodes an open reading frame of 353 amino acids that is highly homologous to other higher plant psbA genes at both the nucleotide and amino acid levels. As has been found for other triazine resistant psbA genes, the ‘Triton’ psbA contains an A to G nucleotide change which results in a serine to glycine amino acid substitution at position 264. The B. napus psbA gene also has a G insertion at position −9 resulting in a ribosome binding site sequence (AGGA) just before the initial methionine and suggesting that the entire open reading frame is translated. A large (72 bp) insertion is also found upstream of the B. napus psbA gene which resembles a similar insertion in the mustard psbA. The “uncloneable” nature of the entire gene is further investigated through reconstruction experiments and the implications discussed.
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  • 8
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 74 (1987), S. 125-139 
    ISSN: 1432-2242
    Keywords: Vicia faba ; Chloroplast genomic evolution ; Rearrangements ; Recombination sites ; Deletions
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The Vicia faba chloroplast genome lacks inverted repeat sequences and contains only one set of ribosomal RNA genes. The genetic organization has been altered by inversions, relative to the typical arrangement of most higher plant chloroplast genomes. The Vicia faba plastid genome thus represents one of the more interesting results of chloroplast genomic evolution. The present study employs small DNA probes and Southern blot hybridizations to investigate the steps involved in the evolution of the Vicia faba chloroplast genome. The data from heterologous hybridizations between chloroplast DNA of Brassica napus (a conserved genome) and of Vicia faba led to three observations: 1) The inverted repeat segment closest to the psbA gene was deleted prior to the rearrangements. 2) A quarter of the ancestral small single copy region was lost during the deletion. 3) The genetic organization observed in Vicia faba resulted from three inversions after the deletion event. Our findings, combined with previous observations, helped devise a stepwise model for the evolution of the Vicia faba chloroplast genome. The area of the small single copy region absent from the Vicia faba chloroplast chromosome lacks in vivo transcription activity in Brassica napus.
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  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 71 (1986), S. 716-723 
    ISSN: 1432-2242
    Keywords: Chloroplast DNA map ; Brassica napus ; Triazine resistance ; Canola
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The chloroplast of a triazine resistant weed biotype of Brassica campestris (bird's rape) has been transferred by repeated back-crossing into an agriculturally important strain, ‘Tower’, of Brassica napus to form a triazine resistant cultivar of canola, ‘Triton’, that is low in both erucic acid and thioglucosinolate. In this report, the B. campestris derived chloroplast chromosome of B. napus (cv ‘Triton’) has been cloned into bacterial plasmids and physically mapped for eight restriction enzymes: Apa I, Bam HI, BglI, Hind III, Pst I, Pvu II, Sac I and Xho I. The genes for rRNA, rbcL, cytF, atpA, atpB, atpE, atpH and the triazine resistance gene, psbA were located on the map by heterologous hybridization. The directions of transcription for most of these genes were determined by reverse heterologous hybridization.
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 65 (1983), S. 201-206 
    ISSN: 1432-2242
    Keywords: Brassica ; Chloroplast DNA ; Maternal inheritance ; Amphiploids
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Chloroplast (ct) DNA from the three elementary Brassica species (B. nigra (L.) Koch, B. oleracea L. and B. campestris L.) and the three amphiploid Brassica species (B. carinata A. Br., B. napus L. and B. juncea (L.) Czern.) was digested with fifteen restriction endonucleases. In all species restriction sites for enzymes with GC-rich recognition sequences were less frequent and not as variable as for those with AT-rich sequences. Comparisons between species revealed two distinct groups of ct DNA fragment patterns: complex one, composed of B. oleracea, B. napus, B. campestris and B. juncea and complex two, composed of B. nigra and B. carinata. The patterns of B. carinata were virtually identical to those of B. nigra and those of B. juncea were virtually identical to those of B. campestris indicating not only where the ct genomes of B. carinata and B. juncea originated, but also how little these genomes have been altered since the origin of these amphiploids. Ct DNA in B. napus shows more homology with that of B. oleracea than with that of B. campestris, but the ct genome of this amphiploid has diverged more from that of its putative parent than have those of the other two amphiploids.
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