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  • 1
    Monograph available for loan
    Monograph available for loan
    Washington, D.C. : Mineralogical Society of America
    Associated volumes
    Call number: 11/G 9222
    In: Reviews in mineralogy
    Description / Table of Contents: Although phyllosilicates are common in almost all types of rocks, their detailed study has not advanced in proportion to their importance. Books and reviews on this subject have been restricted primarily to the areas of clay mineralogy and soils. Such treatments understandably restrict coverage of the occurrences of the macroscopic-size species as well as much of their mineralogical and petrological nature. It was decided at the outset that not all phyllosilicates could be covered in a single book, and the size of this volume addressed only to the micas justifies the original decision. Kaolins, serpentines, chlorites, etc. will have to wait until some later date. This volume attempts to gather together much of our knowledge of micas, the most abundant phyllosilicate, and to indicate promising areas of future research. Chapters 1-3 lay the foundations of the classification, structures, and crystal chemistry of micas. Chapter 4 treats bonding and electrostatic modeling of micas. Chapters 5 and 6 cover spectroscopic and optical properties. Chapters 7-13, the bulk of the volume, are devoted to geochemistry and petrology. These include phase equilibria and the occurrences, chemistry, and petrology of micas in igneous, metamorphic, and sedimentary rocks, pegmatites, and certain ore deposits. Some treatments are exhaustive. All are at the forefront of our present knowledge, and indicate clearly the practical applications'of the study of micas to ascertaining various parameters of origin and crystallization history, as well as the many problems that still exist. The aim of this type of treatment is twofold -- to provide a handy reference volume for teachers and students and to enable researchers to pick more easily those directions and problems for which future research is most needed or is apt to be most productive or most challenging. X-ray powder patterns of micas in the literature are of surprisingly poor quality. The best are collated and supplemented with additional new patterns in the Appendix as an aid to identification.
    Type of Medium: Monograph available for loan
    Pages: xii, 584 S. : Ill., graph. Darst.
    ISBN: 0-939950-17-0 , 978-0-939950-17-1
    ISSN: 1529-6466
    Series Statement: Reviews in mineralogy 13
    Language: English
    Note: Chapter 1. Classification and Structures of the Micas by S. W. Bailey, p. 1 - 12 Chapter 2. Crystal Chemistry of the True Micas by S. W. Bailey, p. 13 - 60 Chapter 3. The Brittle Micas by Stephen Guggenheim, p. 61 - 104 Chapter 4. Electrostatic Energy Models of Micas by R. F. Giese, Jr., p. 105 - 144 Chapter 5. Spectroscopy of Micas by George R. Rossman. p. 145 - 182 Chapter 6. Optical Properties of Mica Under the Polarizing Microscope by Ray E. Wilcox, p. 183 - 200 Chapter 7. Experimental Phase Relations of the Micas by David A. Hewitt and David R. Wones, p. 201 - 256 Chapter 8. Paragenesis, Crystallochemical Characteristics, and Geochemical Evolution of Micas in Granitic Pegmatites by Petr Cerny and Donald M. Burt, p. 257 - 298 Chapter 9. Micas in Igneous Rocks by J. Alexander Speer, p. 299 - 356 Chapter 10. Micas in Metamorphic Rocks by Charles V. Guidotti, p. 257 - 468 Chapter 11. F-OH and Cl-OH Exchange in Micas with Applications to Hydrothermal Ore Deposits by James L. Munoz, p. 469 - 494 Chapter 12. Illite by Jan Sordori and Dennis D. Eberl, p. 495 - 544 Chapter 13. Glauconite and Celadonite Minerals by I. Edgar Odom, p. 545 - 572 Appendix: X-Ray Power Patterns of Micas p. 573 - 584
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  • 2
    Monograph available for loan
    Monograph available for loan
    Washington, D.C. : Mineralogical Society of America
    Associated volumes
    Call number: 11/M 02.0109 ; AWI G4-98-0317 ; M 94.0169
    In: Reviews in mineralogy
    Description / Table of Contents: Volume 13 of Reviews in Mineralogy presented much of our present-day knowledge of micas. At the time of that volume (1984), I mentioned that there was too much material available to attempt to cover all of the hydrous phyllosilicates in one volume. The micas were treated first because of their abundance in nature and the fact that more detailed studies had been carried out on them than on the rest of the phyllosilicates. The serpentines, kaolins, smectites, chlorites, etc. would have to wait their turn. Now, four years later, that tum has come. Hence the peculiar nature of the title of this volume. We know less about the rest of the phyllosilicates than we do about the micas, primarily because many of them are of finer grain sizes and lower crystallinities than most of the micas. As a result, we have been unable to determine as much detail regarding their structures, crystal chemistries, and origins. Nevertheless, there is a considerable body of literature about them, and this volume will attempt to collate and evaluate that literature. One compensating factor that has helped greatly in the accumulation of knowledge about these minerals is that some of them occur in large deposits that are of great economic value and thus stimulate interest. For this reason considerable emphasis in this volume will be related to the occurrence, origin, and petrology of the minerals. S. W. Bailey, Madison, Wisconsin, USA September 1,1988 The authors of this volume presented a short course by the same title to about 120 participants in Denver, Colorado, October 29-30,1988, just prior to the 100th anniversary meeting of the Geological Society of America. S. W. ("Bull") Bailey convened the course and edited this volume, his second for Reviews in Mineralogy. Because he is retiring at the end of this academic year after 38 years' teaching at the University of Wisconsin (Madison), his colleagues, friends and I (a diligent student of "Bull" thirty years ago) agreed that it would be appropriate to dedicate this volume to him, odd though it seems to have him editing a book honoring himself. He had no advance knowledge of this dedication.
    Type of Medium: Monograph available for loan
    Pages: xiii, 725 S.
    Edition: 2nd printing
    ISBN: 0-939950-23-5 , 978-0-939950-23-2
    ISSN: 1529-6466
    Series Statement: Reviews in mineralogy 19
    Classification:
    Mineralogy
    Language: English
    Note: Chapter 1. Introduction by S. W. Bailey, p. 1 - 8 Chapter 2. Polytypism of 1:1 Layer Silicates by S. W. Bailey, p. 9 - 28 Chapter 3. Kaolin Minerals: Structures and Stabilities by S. W. Bailey, p. 29 - 66 Chapter 4. Kaolin Minerals: Their Genesis and Occurrences by Haydn H. Murray, p. 67 - 90 Chapter 5. Serpentine Minerals: Structures and Petrology by Frederick J. Wick & D. S. O'Hanley, p. 91 - 168 Chapter 6. Structures and Compositions of Other Trioctahedral 1:1 Phyllosilicates by S.W. Bailey, p. 169 - 188 Chapter 7. Isotopic Studies of Phyllosilicates by Samuel M. Savin and M. Lee, p. 189 - 224 Chapter 8. Talc, Pyrophyllite, and Related Minerals by Bernard W. Evans and Stephen J. Guggenheim, p. 225 - 294 Chapter 9. Stability, Phase Relations, and Thermodynamic Properties of Chlorite and Serpentine Group Minerals by Joseph V. Chernosky, Jr., Rob G. Berman and L. Taras Bryndzia, p. 295 - 346 Chapter 10. Chlorites: Structures and Crystal Chemistry by S.W. Bailey, p. 347 - 404 Chapter 11. Chlorites: Metamorphic Petrology by Jo Laird, p. 405 - 454 Chapter 12. Vermiculite by C. de la Calle and Helene Suquet, p. 455 - 496 Chapter 13. Smectites by N. Güven, p. 497 - 560 Chapter 14. Vector Representation of Phyllosilicate Compositions by Donald M. Burt, p. 561 - 600 Chapter 15. Mixed Layer Chlorite Minerals by Robert C. Reynolds, Jr., p. 601 - 630 Chapter 16. Sepiolite and Palygorskite by Blair F. Jones and Emilio Galan Huertos, p. 631 - 674 Chapter 17. Crystal Chemistry, Classification, and Identification of Modulated Layer Silicates by Stephen J. Guggenheim and Richard A. Eggleton, p. 675 - 725
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    Location: Upper compact magazine
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  • 3
    Publication Date: 2013-10-02
    Description: After calcium silicate amendment to an entire watershed at the Hubbard Brook Experimental Forest, evapotranspiration (ET) increased by ∼20% for 2 y, broadly attributed to a fertilization of tree physiology (1). We suggested that the increase in ET most likely arose from enhanced transpiration due to increased stomatal conductance (gs)...
    Keywords: Letters
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 4
    Publication Date: 2013-04-10
    Description: Acid deposition during the 20th century caused widespread depletion of available soil calcium (Ca) throughout much of the industrialized world. To better understand how forest ecosystems respond to changes in a component of acidification stress, an 11.8-ha watershed was amended with wollastonite, a calcium silicate mineral, to restore available soil...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 5
    Publication Date: 2016-06-20
    Description: Monitoring solutes in precipitation inputs and stream water exports at small watersheds has greatly advanced our understanding of biogeochemical cycling. Surprisingly, although inputs to and outputs from ecosystems are instrumental to understanding sources and sinks of nutrients and other elements, uncertainty in these fluxes is rarely reported in ecosystem budgets. We illustrate error propagation in input–output budgets by comparing the net hydrologic flux of Ca in a harvested and reference watershed at the Hubbard Brook Experimental Forest, New Hampshire. We identify sources of uncertainty and use a Monte Carlo approach to combine many sources of uncertainty to produce an estimate of overall uncertainty. Sources of uncertainty in precipitation inputs included in this study were: rain gage efficiency (undercatch or overcatch), gaps in measurements of precipitation volume, selection of a model for interpolating among rain gages, unusable precipitation chemistry, and chemical analysis. Sources of uncertainty in stream water outputs were: stage height–discharge relationship, watershed area, gaps in the stream flow record, chemical analysis, and the selection of a method for flux calculation. The annual net hydrologic flux of Ca in the harvested and reference watersheds was calculated from 1973 through 2009. Relative to the reference watershed, the harvested watershed showed a marked increase in Ca flux after it was cut in 1983–1984, and slowly declined toward pretreatment levels thereafter. In 2009, the last year evaluated, the 95% confidence intervals for the annual estimates approach the 95% confidence intervals of the pretreatment regression line, suggesting that the increased net loss of Ca in the harvested watershed may soon be indistinguishable from the reference. Identifying the greatest sources of uncertainty can be used to guide improvements, for example in reducing instances of unusable precipitation chemistry and gaps in stream runoff. Our results highlight the value of estimating uncertainty in watershed studies, including those in which replication is impractical.
    Electronic ISSN: 2150-8925
    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Published by Wiley on behalf of The Ecological Society of America (ESA).
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  • 6
    Publication Date: 2015-12-13
    Description: The MiMeS (Magnetism in Massive Stars) project is a large-scale, high-resolution, sensitive spectropolarimetric investigation of the magnetic properties of O- and early B-type stars. Initiated in 2008 and completed in 2013, the project was supported by three Large Program allocations, as well as various programmes initiated by independent principal investigators, and archival resources. Ultimately, over 4800 circularly polarized spectra of 560 O and B stars were collected with the instruments ESPaDOnS (Echelle SpectroPolarimetric Device for the Observation of Stars) at the Canada–France–Hawaii Telescope, Narval at the Télescope Bernard Lyot and HARPSpol at the European Southern Observatory La Silla 3.6 m telescope, making MiMeS by far the largest systematic investigation of massive star magnetism ever undertaken. In this paper, the first in a series reporting the general results of the survey, we introduce the scientific motivation and goals, describe the sample of targets, review the instrumentation and observational techniques used, explain the exposure time calculation designed to provide sensitivity to surface dipole fields above approximately 100 G, discuss the polarimetric performance, stability and uncertainty of the instrumentation, and summarize the previous and forthcoming publications.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
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  • 7
    Publication Date: 2014-06-01
    Description: Searches for periodic signals (candidate Milankovitch cycles) in stratigraphic data often make use of methods of spectral analysis, some of which have come to be regarded as standard and therefore reliable. In this paper we highlight a problem with the application of filtering, or smoothing, to the data prior to spectral analysis. Such preprocessing is frequently used to amplify the signal-to-noise ratio at the expected wavelength. Using synthetic random data, we demonstrate how filtering generates artificial spectral peaks close to the characteristic wavelength of the filter. When applying the same preprocessing methods to actual stratigraphic data, we find that it is possible to replicate some recently published results claiming to show cyclicity. We recommend that filtering and other preprocessing techniques be used with great care: spectral peaks occurring close to the characteristic scale of the applied filter are likely to be artefacts of preprocessing.
    Print ISSN: 0305-8719
    Electronic ISSN: 2041-4927
    Topics: Geosciences
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  • 8
    Publication Date: 2014-08-06
    Description: Author(s): S. Bailey, M. Freer, Tz. Kokalova, S. Cruz, H. Floyd, and D. J. Parker Measurements were made of the differential cross section of the resonant reactions 4He(14N,α) and, 4He(14N,d)16O with the intention of investigating the compound nucleus F18. These measurements were performed in inverse kinematics at a center-of-mass scattering angle of θc.m.=180∘ by using a thick H... [Phys. Rev. C 90, 024302] Published Tue Aug 05, 2014
    Keywords: Nuclear Structure
    Print ISSN: 0556-2813
    Electronic ISSN: 1089-490X
    Topics: Physics
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  • 9
    Publication Date: 2015-06-18
    Description: The bacterial ubiD and ubiX or the homologous fungal fdc1 and pad1 genes have been implicated in the non-oxidative reversible decarboxylation of aromatic substrates, and play a pivotal role in bacterial ubiquinone (also known as coenzyme Q) biosynthesis or microbial biodegradation of aromatic compounds, respectively. Despite biochemical studies on individual gene products, the composition and cofactor requirement of the enzyme responsible for in vivo decarboxylase activity remained unclear. Here we show that Fdc1 is solely responsible for the reversible decarboxylase activity, and that it requires a new type of cofactor: a prenylated flavin synthesized by the associated UbiX/Pad1. Atomic resolution crystal structures reveal that two distinct isomers of the oxidized cofactor can be observed, an isoalloxazine N5-iminium adduct and a N5 secondary ketimine species with markedly altered ring structure, both having azomethine ylide character. Substrate binding positions the dipolarophile enoic acid group directly above the azomethine ylide group. The structure of a covalent inhibitor-cofactor adduct suggests that 1,3-dipolar cycloaddition chemistry supports reversible decarboxylation in these enzymes. Although 1,3-dipolar cycloaddition is commonly used in organic chemistry, we propose that this presents the first example, to our knowledge, of an enzymatic 1,3-dipolar cycloaddition reaction. Our model for Fdc1/UbiD catalysis offers new routes in alkene hydrocarbon production or aryl (de)carboxylation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Payne, Karl A P -- White, Mark D -- Fisher, Karl -- Khara, Basile -- Bailey, Samuel S -- Parker, David -- Rattray, Nicholas J W -- Trivedi, Drupad K -- Goodacre, Royston -- Beveridge, Rebecca -- Barran, Perdita -- Rigby, Stephen E J -- Scrutton, Nigel S -- Hay, Sam -- Leys, David -- BB/K017802/1/Biotechnology and Biological Sciences Research Council/United Kingdom -- BB/M/017702/1/Biotechnology and Biological Sciences Research Council/United Kingdom -- England -- Nature. 2015 Jun 25;522(7557):497-501. doi: 10.1038/nature14560. Epub 2015 Jun 17.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Centre for Synthetic Biology of Fine and Speciality Chemicals, Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester M1 7DN, UK. ; Innovation/Biodomain, Shell International Exploration and Production, Westhollow Technology Center, 3333 Highway 6 South, Houston, Texas 77082-3101, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26083754" target="_blank"〉PubMed〈/a〉
    Keywords: Alkenes/chemistry/metabolism ; Aspergillus niger/enzymology/genetics ; *Biocatalysis ; Carboxy-Lyases/chemistry/genetics/*metabolism ; Crystallography, X-Ray ; *Cycloaddition Reaction ; Decarboxylation ; Escherichia coli Proteins/chemistry/genetics/metabolism ; Flavins/biosynthesis/chemistry/metabolism ; Isomerism ; Ligands ; Models, Molecular ; Ubiquinone/biosynthesis
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 10
    Publication Date: 2012-07-27
    Description: Medulloblastoma, the most common malignant paediatric brain tumour, is currently treated with nonspecific cytotoxic therapies including surgery, whole-brain radiation, and aggressive chemotherapy. As medulloblastoma exhibits marked intertumoural heterogeneity, with at least four distinct molecular variants, previous attempts to identify targets for therapy have been underpowered because of small samples sizes. Here we report somatic copy number aberrations (SCNAs) in 1,087 unique medulloblastomas. SCNAs are common in medulloblastoma, and are predominantly subgroup-enriched. The most common region of focal copy number gain is a tandem duplication of SNCAIP, a gene associated with Parkinson's disease, which is exquisitely restricted to Group 4alpha. Recurrent translocations of PVT1, including PVT1-MYC and PVT1-NDRG1, that arise through chromothripsis are restricted to Group 3. Numerous targetable SCNAs, including recurrent events targeting TGF-beta signalling in Group 3, and NF-kappaB signalling in Group 4, suggest future avenues for rational, targeted therapy.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3683624/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3683624/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Northcott, Paul A -- Shih, David J H -- Peacock, John -- Garzia, Livia -- Morrissy, A Sorana -- Zichner, Thomas -- Stutz, Adrian M -- Korshunov, Andrey -- Reimand, Juri -- Schumacher, Steven E -- Beroukhim, Rameen -- Ellison, David W -- Marshall, Christian R -- Lionel, Anath C -- Mack, Stephen -- Dubuc, Adrian -- Yao, Yuan -- Ramaswamy, Vijay -- Luu, Betty -- Rolider, Adi -- Cavalli, Florence M G -- Wang, Xin -- Remke, Marc -- Wu, Xiaochong -- Chiu, Readman Y B -- Chu, Andy -- Chuah, Eric -- Corbett, Richard D -- Hoad, Gemma R -- Jackman, Shaun D -- Li, Yisu -- Lo, Allan -- Mungall, Karen L -- Nip, Ka Ming -- Qian, Jenny Q -- Raymond, Anthony G J -- Thiessen, Nina T -- Varhol, Richard J -- Birol, Inanc -- Moore, Richard A -- Mungall, Andrew J -- Holt, Robert -- Kawauchi, Daisuke -- Roussel, Martine F -- Kool, Marcel -- Jones, David T W -- Witt, Hendrick -- Fernandez-L, Africa -- Kenney, Anna M -- Wechsler-Reya, Robert J -- Dirks, Peter -- Aviv, Tzvi -- Grajkowska, Wieslawa A -- Perek-Polnik, Marta -- Haberler, Christine C -- Delattre, Olivier -- Reynaud, Stephanie S -- Doz, Francois F -- Pernet-Fattet, Sarah S -- Cho, Byung-Kyu -- Kim, Seung-Ki -- Wang, Kyu-Chang -- Scheurlen, Wolfram -- Eberhart, Charles G -- Fevre-Montange, Michelle -- Jouvet, Anne -- Pollack, Ian F -- Fan, Xing -- Muraszko, Karin M -- Gillespie, G Yancey -- Di Rocco, Concezio -- Massimi, Luca -- Michiels, Erna M C -- Kloosterhof, Nanne K -- French, Pim J -- Kros, Johan M -- Olson, James M -- Ellenbogen, Richard G -- Zitterbart, Karel -- Kren, Leos -- Thompson, Reid C -- Cooper, Michael K -- Lach, Boleslaw -- McLendon, Roger E -- Bigner, Darell D -- Fontebasso, Adam -- Albrecht, Steffen -- Jabado, Nada -- Lindsey, Janet C -- Bailey, Simon -- Gupta, Nalin -- Weiss, William A -- Bognar, Laszlo -- Klekner, Almos -- Van Meter, Timothy E -- Kumabe, Toshihiro -- Tominaga, Teiji -- Elbabaa, Samer K -- Leonard, Jeffrey R -- Rubin, Joshua B -- Liau, Linda M -- Van Meir, Erwin G -- Fouladi, Maryam -- Nakamura, Hideo -- Cinalli, Giuseppe -- Garami, Miklos -- Hauser, Peter -- Saad, Ali G -- Iolascon, Achille -- Jung, Shin -- Carlotti, Carlos G -- Vibhakar, Rajeev -- Ra, Young Shin -- Robinson, Shenandoah -- Zollo, Massimo -- Faria, Claudia C -- Chan, Jennifer A -- Levy, Michael L -- Sorensen, Poul H B -- Meyerson, Matthew -- Pomeroy, Scott L -- Cho, Yoon-Jae -- Bader, Gary D -- Tabori, Uri -- Hawkins, Cynthia E -- Bouffet, Eric -- Scherer, Stephen W -- Rutka, James T -- Malkin, David -- Clifford, Steven C -- Jones, Steven J M -- Korbel, Jan O -- Pfister, Stefan M -- Marra, Marco A -- Taylor, Michael D -- AT1-112286/Canadian Institutes of Health Research/Canada -- CA116804/CA/NCI NIH HHS/ -- CA138292/CA/NCI NIH HHS/ -- CA159859/CA/NCI NIH HHS/ -- CA86335/CA/NCI NIH HHS/ -- K08 NS059790/NS/NINDS NIH HHS/ -- P20 CA151129/CA/NCI NIH HHS/ -- P30 CA138292/CA/NCI NIH HHS/ -- P30 HD018655/HD/NICHD NIH HHS/ -- P41 GM103504/GM/NIGMS NIH HHS/ -- R01 CA086335/CA/NCI NIH HHS/ -- R01 CA109467/CA/NCI NIH HHS/ -- R01 CA114567/CA/NCI NIH HHS/ -- R01 CA116804/CA/NCI NIH HHS/ -- R01 CA148621/CA/NCI NIH HHS/ -- R01 CA155360/CA/NCI NIH HHS/ -- R01 CA159859/CA/NCI NIH HHS/ -- R01 CA163737/CA/NCI NIH HHS/ -- R01 NS061070/NS/NINDS NIH HHS/ -- England -- Nature. 2012 Aug 2;488(7409):49-56. doi: 10.1038/nature11327.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario M5G 1L7, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22832581" target="_blank"〉PubMed〈/a〉
    Keywords: Carrier Proteins/genetics ; Cerebellar Neoplasms/*classification/*genetics/metabolism ; Child ; DNA Copy Number Variations/genetics ; Gene Duplication/genetics ; Genes, myc/genetics ; Genome, Human/*genetics ; Genomic Structural Variation/*genetics ; Genomics ; Hedgehog Proteins/metabolism ; Humans ; Medulloblastoma/*classification/*genetics/metabolism ; NF-kappa B/metabolism ; Nerve Tissue Proteins/genetics ; Oncogene Proteins, Fusion/genetics ; Proteins/genetics ; RNA, Long Noncoding ; Signal Transduction ; Transforming Growth Factor beta/metabolism ; Translocation, Genetic/genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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