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  • 1
    Publication Date: 2021-05-19
    Description: In this study population genetic structure of Mnemiopsis leidyi were examined by 200 samples from the Caspian Sea. Samples were collected from Guilan province (Astara region), Mazandaran province (Amir Abad region), Golestan province (Gomishan region) and north part of the Caspian Sea. 50 samples were colected from each region. DNA was extracted by phenol - chlorophorm method and its concentration was 50 to 100 nanogram . PCR was performed using 18s rRNA gene. The PCR products of samples were digested by 12 restriction endonuclease enzymes. The digested products accompanied with standard marker (50 bp lader ). In order to measure fragment size samples were run on a 6% vertical polyacrylamide gel. The fragments were visualized by silver staining of the polyacrylamide gel. In this study, Dra I and Alu I enzymes showed different digestion pattern, as each of these enzymes had two genotypes. Other enzymes had similar digestion pattern. RAPD method used by 19 random primers. Ten of nineteen primers showed polymorphism patterns. Statistical analysis of data was performed by Popgene software. In this study, the maximum of genetic variation was in north of the Caspian Sea. Also, the maximum of genetic distance was between north area and Golestan coasts (0.089) and the minimum of genetic distance was between Mazandaran and Guilan coasts (0.001). The UOGMA dendogram showed two clusters. The samples of Mazandaran , Guilan and Golestan coasts placed in one cluster and samples of north area in other cluster The genetic diversity was significantly different between samples of north area and Golestan coasts (p≤0.05). As result, there is a significant genetic divergence between some of samples. Therefore, two genetic group of Mnemiopsis leidyi were identified in the Caspian Sea.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Ecological ; RFLP ; RAPD ; Mnemiopsis leidyi ; Genetic variation ; Population ; Molecular Test ; Samples ; Enzymes ; Genotype
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 47pp.
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  • 2
    Publication Date: 2021-05-19
    Description: A total of 28 specimens of adult Russian sturgeon brood fish from the Volga River (Astrakhan, Russia) and 42 specimens from the south Caspian Sea (coastline of Iran and Turkmenistan) were collected. About 2g of fin tissue was stored in 96% ethyl alcohol and transferred to the genetic laboratory of the International Sturgeon Research Institute. Genomic DNA was extracted using phenol-chloroform method. The quality and quantity of DNA was assessed by Agarose gel electrophoresis and spectrophotometry. Polymerase Chain Reaction (PCR) was conducted using eight pairs of microsatellite primers and its products were electrophoresed using 6% polyacrylamid gel followed by silver nitrate staining. Allele sizes were measured in all populations, then genetic parameters were calculated using Gen Alex program and the phylogenetic relationship was determined and drawn using TFPGA program. A minimum of 10 and a maximum of 21 alleles were identified per locus and the observed heterozygosity ranged between 0.50-0.96 and the expected heterozygosity was 0.74-0.90 with an average of 0.68. Hardy-Weinberg equilibrium was observed at Ls-19, Ls-39 loci, but showed disequilibrium in other loci. Fst index between Volga and South Caspian Sea samples was 0.031. The genetic similarity and distance was 0.661 and 0.414, respectively. Results of the present investigation indicate that there are no significant differences between the south Caspian Sea Russian sturgeon specimens.
    Description: Published
    Keywords: Rivers ; Microsatellites ; Gel electrophoresis ; Polymerase chain reaction ; Primers ; Coasts ; Acipenser gueldenstaedtii ; Acipenser ; Brackish ; Population Genetics ; Genes ; Electrophoresis ; Fins ; DNA ; Genetic diversity ; Natural populations ; Phylogenetics ; Phylogeny ; Heterozygosity ; Migration ; Alcohols ; Spectrophotometry ; Genomics ; Silver nitrate ; Genetic structure
    Repository Name: AquaDocs
    Type: Journal Contribution , Refereed
    Format: pp.69-80
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  • 3
    Publication Date: 2021-07-15
    Description: A total of 28 specimens of adult Russian sturgeon brood fish from the Volga River (Astrakhan, Russia) and 42 specimens from the south Caspian Sea (coastline of Iran and Turkmenistan) were collected. About 2g of fin tissue was stored in 96% ethyl alcohol and transferred to the genetic laboratory of the International Sturgeon Research Institute. Genomic DNA was extracted using phenol-chloroform method. The quality and quantity of DNA was assessed by Agarose gel electrophoresis and spectrophotometry. Polymerase Chain Reaction (PCR) was conducted using eight pairs of microsatellite primers and its products were electrophoresed using 6% polyacrylamide gel followed by silver nitrate staining. Allele sizes were measured in all populations, then genetic parameters were calculated using Gen Alex program and the phylogenetic relationship was determined and drawn using TFPGA program. A minimum of 10 and a maximum of 21 alleles were identified per locus and the observed heterozygosity ranged between 0.50-0.96 and the expected heterozygosity was 0.74-0.90 with an average of 0.68. Hardy-Weinberg equilibrium was observed at Ls-19, Ls-39 loci, but showed disequilibrium in other loci. FST index between Volga and South Caspian Sea samples was 0.031. The genetic similarity and distance was 0.661 and 0.414, respectively. Results of the present investigation indicate that there are no significant differences between the south Caspian Sea Russian sturgeon specimens.
    Keywords: Biology ; Population Genetics ; Genes ; Electrophoresis ; Fins ; DNA ; Genetic diversity ; Natural populations ; Phylogenetics ; Phylogeny ; Heterozygosity ; Migration ; Alcohols ; Spectrophotometry ; Genomics ; Silver nitrate ; Genetic structure ; Rivers ; Microsatellites ; Gel electrophoresis ; Polymerase chain reaction ; Primers ; Coasts ; Acipenser gueldenstaedtii ; Acipenser ; Brackish ; Caspian Sea ; Caspian Sea Turkmenistan ; Iran
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 69-80
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  • 4
    Publication Date: 2021-07-16
    Description: In this study population genetic structure of Mnemiopsis leidyi were examined by 200 samples from the Caspian Sea. Samples were collected from Guilan province (Astara region), Mazandaran province (Amir Abad region), Golestan province (Gomishan region) and north part of the Caspian Sea. 50 samples were collected from each region. DNA was extracted by phenol - chlorophorm method and its concentration was 50 to 100 nanogram. PCR was performed using 18s rRNA gene. The PCR products of samples were digested by 12 restriction endonuclease enzymes. The digested products accompanied with standard marker (50 bp lader ). In order to measure fragment size samples were run on a 6% vertical polyacrylamide gel. The fragments were visualized by silver staining of the polyacrylamide gel. In this study, Dra I and Alu I enzymes showed different digestion pattern, as each of these enzymes had two genotypes. Other enzymes had similar digestion pattern. RAPD method used by 19 random primers. Ten of nineteen primers showed polymorphism patterns. Statistical analysis of data was performed by Popgene software. In this study, the maximum of genetic variation was in north of the Caspian Sea. Also, the maximum of genetic distance was between north area and Golestan coasts (0.089) and the minimum of genetic distance was between Mazandaran and Guilan coasts (0.001). The UOGMA dendogram showed two clusters. The samples of Mazandaran , Guilan and Golestan coasts placed in one cluster and samples of north area in other cluster The genetic diversity was significantly different between samples of north area and Golestan coasts (p≤0.05). As result, there is a significant genetic divergence between some of samples. Therefore, two genetic group of Mnemiopsis leidyi were identified in the Caspian Sea.
    Keywords: Biology ; Iran ; Caspian Sea ; Guilan province ; Mazandaran province ; Golestan province ; RFLP ; RAPD ; Mnemiopsis leidyi ; Genetic variation ; Population ; Molecular Test ; Samples ; Enzymes ; Genotype
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 47
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  • 5
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    In:  http://aquaticcommons.org/id/eprint/22928 | 18721 | 2018-06-06 14:19:39 | 22928 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-11
    Description: Several studies on the white sardine: Sardinella albella, have focused on the identification of stock composition and behavior. In this study population genetic structure and historical demography of S. albella along the cost of the Persian Gulf and Sea of Oman were investigated with a 500-bp segment of mt-DNA control region. In total 40 samples were collected from 3 locations: Jask in Sea of Oman, Qeshm in Strait of Hormuz and Lengeh in the Persian Gulf during 2012-2013. 33 haplotype were obtained none of which were presented in all sampling sites. Analysis of molecular variance (AMOVA) indicated low genetic differentiation among regions (F_ST=0.024, p〈0.05). The average pair wise differences between regional population were small but significant (0.0158-0.165). Molecular variance explained by differences among three regions was significantly different from zero but the F_ST did not show clear phylogeographic isolation. This observation can support the conclusion that S. albella has a widespread dispersal potential.
    Keywords: Biology ; Fisheries ; Sardinella albella ; Clupeidae ; Sardine Fish ; Persian Gulf ; Oman Sea ; Iran
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 995-1008
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  • 6
    Publication Date: 2021-05-19
    Description: Several studies on the white sardine: Sardinella albella, have focused on the identification of stock composition and behavior. In this study population genetic structure and historical demography of S. albella along the cost of the Persian Gulf and Sea of Oman were investigated with a 500-bp segment of mt-DNA control region. In total 40 samples were collected from 3 locations: Jask in Sea of Oman, Qeshm in Strait of Hormuz and Lengeh in the Persian Gulf during 2012-2013. 33 haplotype were obtained none of which were presented in all sampling sites. Analysis of molecular variance (AMOVA) indicated low genetic differentiation among regions (FST=0.024, p〈0.05).The average pair wise differences between regional population were small but significant (0.0158-0.165). Molecular variance explained by differences among three regions was significantly different from zero but the FST did not show clear phylogeographic isolation. This observation can support the conclusion that S. albella has a widespread dispersal potential.
    Description: Published
    Keywords: Aquaculture ; Sardinella albella ; Clupeidae ; Sardine Fish ; Structure ; Genetic ; Population ; Mitochondrial
    Repository Name: AquaDocs
    Type: Journal Contribution , Refereed
    Format: pp.995-1008
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