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  • 1
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    Cambridge University Press, 327 pp.
    In:  Cambridge, Cambridge University Press, 327 pp., vol. 2, no. XVI:, pp. 1-14, (ISBN 0-521-80380-2 (hb), 0521-00859-X (pb))
    Publication Date: 2001
    Keywords: Textbook of mathematics ; Modelling ; Data analysis / ~ processing ; BIBTEX?
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  • 2
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    Soc. Professional Well Log Analysts
    In:  SPWLA, 21st Annu. Log. Symp. Trans., Univ. Karlsruhe, Soc. Professional Well Log Analysts, vol. 1034, no. paper P, pp. 262-277, (ISBN 3-933346-037)
    Publication Date: 1980
    Keywords: Borehole geophys. ; Borehole Compensated Sonic log
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  • 3
    Publication Date: 2015-08-07
    Description: Parent-specific gene expression (PSGE) is little known outside of mammals and plants. PSGE occurs when the expression level of a gene depends on whether an allele was inherited from the mother or the father. Kin selection theory predicts that there should be extensive PSGE in social insects because social insect parents can gain inclusive fitness benefits by silencing parental alleles in female offspring. We searched for evidence of PSGE in honey bees using transcriptomes from reciprocal crosses between European and Africanized strains. We found 46 transcripts with significant parent-of-origin effects on gene expression, many of which overexpressed the maternal allele. Interestingly, we also found a large proportion of genes showing a bias toward maternal alleles in only one of the reciprocal crosses. These results indicate that PSGE may occur in social insects. The nonreciprocal effects could be largely driven by hybrid incompatibility between these strains. Future work will help to determine if these are indeed parent-of-origin effects that can modulate inclusive fitness benefits.
    Electronic ISSN: 2160-1836
    Topics: Biology
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  • 4
    Publication Date: 2016-07-13
    Description: A coupled biophysical model is used to explore the physical controls involved in the timing of the spring phytoplankton bloom in fjords. Observations from Rivers Inlet, British Columbia, are used to force and evaluate the model. It is found that the interannual variation in timing is due primarily to variations in retention, in particular, to variations in horizontal advection out of the fjord. The two dominant processes are (i) strong outflow winds rapidly advecting the surface layer and thus the phytoplankton population out of the fjord and (ii) losses due to high river flux increasing the estuarine circulation. Both processes delay the timing of spring bloom. Smaller effects on the interannual variation are due to increased wind mixing which deepens the mixing layer and reduces light to phytoplankton, and increased river flow which increases the stratification and decreases the mixing layer depth. Observed interannual variations in cloudiness were small. Strong outflow winds are common in winter along the British Columbia coast, but generally cease after the spring wind transition. Thus, observed interdecadal variations in the spring transition date probably imply strong variations in the timing of spring phytoplankton blooms in British Columbia fjords.
    Print ISSN: 1054-3139
    Electronic ISSN: 1095-9289
    Topics: Biology , Geosciences , Physics
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  • 5
    Publication Date: 2013-04-05
    Description: Ensemble data assimilation typically evolves an ensemble of model states whose spread is intended to represent the algorithm's uncertainty about the state of the physical system that produces the data. The analysis phase treats the forecast ensemble as a random sample from a background distribution, and it transforms the ensemble according to the background and observation error statistics to provide an appropriate sample for the next forecast phase. We find that in the presence of model nonlinearity and model error, it can be fruitful to rescale the ensemble spread prior to the forecast and then reverse this rescaling after the forecast. We call this approach forecast spread adjustment , which we discuss and test in this article using an ensemble Kalman filter and a 2005 model due to Lorenz. We argue that forecast spread adjustment provides a tunable parameter, that is, complementary to covariance inflation, which cumulatively increases ensemble spread to compensate for underestimation of uncertainty. We also show that as the adjustment parameter approaches zero, the filter approaches the extended Kalman filter if the ensemble size is sufficiently large. We find that varying the adjustment parameter can significantly reduce analysis and forecast errors in some cases. We evaluate how the improvement provided by forecast spread adjustment depends on ensemble size, observation error and model error. Our results indicate that the technique is most effective for small ensembles, small observation error and large model error, though the effectiveness depends significantly on the nature of the model error. Keywords: ensemble, Kalman filter, data assimilation, forecast spread, covariance inflation (Published: 4 April 2013) Citation: Tellus A 2013, 65 , 19929, http://dx.doi.org/10.3402/tellusa.v65i0.19929
    Print ISSN: 0280-6495
    Electronic ISSN: 1600-0870
    Topics: Geography , Geosciences , Physics
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  • 6
    Publication Date: 2015-04-28
    Description: Limited-area models (LAMs) allow high-resolution forecasts to be made for geographic regions of interest when resources are limited. Typically, boundary conditions for these models are provided through one-way boundary coupling from a coarser resolution global model. Here, data assimilation is considered in a situation in which a global model supplies boundary conditions to multiple LAMs. The data assimilation method presented combines information from all of the models to construct a single ‘composite state’, on which data assimilation is subsequently performed. The analysis composite state is then used to form the initial conditions of the global model and all of the LAMs for the next forecast cycle. The method is tested by using numerical experiments with simple, chaotic models. The results of the experiments show that there is a clear forecast benefit to allowing LAM states to influence one another during the analysis. In addition, adding LAM information at analysis time has a strong positive impact on global model forecast performance, even at points not covered by the LAMs. Keywords: Ensemble Kalman Filter, limited-area models, composite state (Published: 27 April 2015) Citation: Tellus A 2015, 67, 26495, http://dx.doi.org/10.3402/tellusa.v67.26495
    Print ISSN: 0280-6495
    Electronic ISSN: 1600-0870
    Topics: Geography , Geosciences , Physics
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  • 7
    Publication Date: 2015-04-08
    Description: The focus of this paper is to establish the effect of source Reynolds number, Re 0 , on the mean rise heights of Boussinesq miscible fountains and thereby the range of Re 0 for which rise heights are independent of Re 0 . We present results from experiments on aqueous-saline fountains spanning source Reynolds numbers of 15 ≤ Re 0 ≤ 4000 and source Froude numbers of 0.3 ≤ Fr 0 ≤ 40. We provide threshold values for the source Reynolds number, i.e., values above which fountain rise height may be regarded as independent of Re 0 . For Reynolds numbers immediately beneath these threshold values, the fountain rise height increases as Re 0 decreases—in agreement with Lin and Armfield [“The Reynolds and Prandtl number dependence of weak fountains,” Comput. Mech. 31 , 379–389 (2003)]. At even lower Re 0 , we show that the rise heights reach a maximum and that further decreases in Re 0 decrease the rise height attained—in agreement with Phillipe et al. , [“Penetration of a negatively buoyant jet in a miscible liquid,” Phys. Fluids 17 , 053601 (2005)]. As such, we resolve an apparent inconsistency within the existing fountain literature.
    Print ISSN: 1070-6631
    Electronic ISSN: 1089-7666
    Topics: Physics
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  • 8
    Publication Date: 2019
    Description: Journal of Climate, Volume 32, Issue 7, Page 1997-2011, April 2019. 〈br/〉
    Print ISSN: 0894-8755
    Electronic ISSN: 1520-0442
    Topics: Geosciences , Physics
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  • 9
    Publication Date: 2015-05-26
    Description: Ensemble data assimilation methods are potentially attractive because they provide a computationally affordable (and computationally parallel) means of obtaining flow-dependent background-error statistics. However, a limitation of these methods is that the rank of their flow-dependent background-error covariance estimate, and hence the space of possible analysis increments, is limited by the number of forecast ensemble members. To overcome this deficiency ensemble methods typically use empirical localisation, which allows more degrees of freedom for the analysis increment by suppressing spatially distant background correlations. The method presented here improves the performance of an Ensemble Kalman filter by increasing the size of the ensemble at analysis time in order to boost the rank of its background-error covariance estimate. The additional ensemble members added to the forecast ensemble at analysis time are created by adding a collection of ‘climatological’ perturbations to the forecast ensemble mean. These perturbations are constant in time and provide state space directions, possibly missed by the dynamically forecasted background ensemble, in which the analysis increment can correct the forecast mean based on observations. As the climatological perturbations are calculated once, there is negligible computational cost in obtaining the additional ensemble members at each analysis cycle. Included here are a formulation of the method, results of numerical experiments conducted with a spatiotemporally chaotic model in one spatial dimension and discussion of possible future extensions and applications. The numerical tests indicate that the method presented here has significant potential for improving analyses and forecasts. Keywords: ensemble Kalman filter, climatological covariance, data assimilation (Published: 25 May 2015) Citation: Tellus A 2015, 67, 26617, http://dx.doi.org/10.3402/tellusa.v67.26617
    Print ISSN: 0280-6495
    Electronic ISSN: 1600-0870
    Topics: Geography , Geosciences , Physics
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  • 10
    Publication Date: 2015-06-10
    Description: Here we present data using a bioluminescent dinoflagellate, Pyrocystis lunula, in a toxicological bioassay to rapidly assess potential instances of groundwater contamination associated with natural gas extraction. P. lunula bioluminescence can be quantified using spectrophotometry as a measurement of organismal viability, with normal bioluminescent output declining with increasing concentration(s) of aqueous toxicants. Glutaraldehyde and hydrochloric acid (HCl), components used in hydraulic fracturing and shale acidization, triggered significant toxicological responses in as little as 4 h. Conversely, P. lunula was not affected by the presence of arsenic, selenium, barium, and strontium, naturally occurring heavy metal ions potentially associated with unconventional drilling activities. If exogenous compounds, such as glutaraldehyde and HCl, are thought to have been introduced into groundwater, quantification of P. lunula bioluminescence after exposure to water samples can serve as a cost-effective detection and risk assessment tool to rapidly assess the impact of putative contamination events attributed to unconventional drilling activity.
    Print ISSN: 2090-9063
    Topics: Chemistry and Pharmacology
    Published by Hindawi
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