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  • 1
    Publication Date: 2012-02-01
    Description: Following infection with Epstein–Barr virus (EBV), the virus is carried for life in the memory B-cell compartment in a silent state (latency I/0). These cells do not resemble the proliferating lymphoblastoid cells (LCLs) (latency III) that are generated after infection. It is of fundamental significance to identify how the different EBV expression patterns are established in the latently infected cell. In view of the prompt activatability of CD4+ T cells in primary EBV infection, and their role in B-cell differentiation, we studied the involvement of CD4+ T cells in the regulation of EBV latency. Lymphoblastoid cell lines (LCLs) were cocultured with autologous or allogeneic CD4+ T cells. Activated T cells influenced the expression of two key viral proteins that determine the fate of the infected B cell. EBNA2 was down-regulated, whereas LMP1 was unregulated and the cells proliferated less. This was paralleled by the down-regulation of the latency III promoter (Cp). Experiments performed in the transwell system showed that this change does not require cell contact, but it is mediated by soluble factors. Neutralizing experiments proved that the up-regulation of LMP1 is, to some extent, mediated by IL21, but this cytokine was not responsible for EBNA2 down-regulation. This effect was partly mediated by soluble CD40L. We detected similar regulatory functions of T cells in in vitro-infected lymphocyte populations. In conclusion, our results revealed an additional mechanism by which CD4+ T cells can control the EBV-induced B-cell proliferation.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Archives of microbiology 120 (1979), S. 61-66 
    ISSN: 1432-072X
    Keywords: Clostridium cochlearium ; Clostridium tetanomorphum ; Glutamate fermentation ; Anaerobic mixed cultures
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Clostridium cochlearium could be reproducibly enriched in an L-aspartate- and L-glutamate-limited, anaerobic chemostat inoculated with anaerobic sludge. L-glutamate, L-glutamine and L-histidine were the only fermentable substrates. Less specialised clostridia of the C. tetanomorphum type could only be isolated from batch enrichments with L-glutamate and L-aspartate as energy sources. Competition experiments with C. cochlearium and C. tetanomorphum in a L-glutamate-limited chemostat resulted in the selective elimination of the latter species. Addition of glucose to the medium resulted in coexistence of both species. The molar growth yields for L-glutamate at different dilution rates at 30°C were determined for both species. The maximum specific growth rates on L-glutamate were 0.55 h-1 for C. cochlearium and 0.35 h-1 for C. tetanomorphum.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] After the finding that pERT87 probes detect deletions in 7% of the DMD patients10 , additional probes were isolated which raised the deletion fraction to between 11 and 17% (ref. 13 and Table 1). The use of rare cutting restriction enzymes in combination with pulsed field gradient (PFG) (ref. 14) ...
    Type of Medium: Electronic Resource
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  • 4
    Publication Date: 2013-10-01
    Description: Increasing ocean temperatures and strengthening boundary currents have caused the poleward migration of many marine species. Cubozoan jellyfish known to cause Irukandji syndrome have historically been confined to tropical waters but may be expanding into sub-tropical regions. Here we examine the interactive effects of warming and acidification on the population dynamics of polyps of an Irukandji jellyfish, Alatina nr mordens, and the formation of statoliths in newly metamorphosed medusae, to determine if this jellyfish could tolerate future conditions predicted for southeast Queensland (SEQ), Australia. Two experiments, examining the orthogonal factors of temperature and pH were undertaken. Experiment 1 mimicked the current, ca. 2050 and ca. 2100 summer temperature and pH conditions predicted for SEQ using A1F1 scenarios (temperature: 25, 27, 29°C; pH: 7.9, 7.8, 7.6) and Experiment 2 mimicked current and future winter conditions (18 and 22°C, pH 7.9, 7.8, 7.6). All polyps in Experiment 1 survived and budded. Fewer polyps budded in the lower pH treatments but patterns varied slightly among temperature treatments. Statoliths at pH 7.6 were 24% narrower than those at pH 7.8 and 7.9. Most polyps survived the winter conditions mimicked by Experiment 2 but only polyps in the 22°C, pH 7.9 treatment increased significantly. The current absence of A . nr mordens medusae in SEQ, despite the polyps’ ability to tolerate the current temperature and pH conditions, suggests that ecological, rather than abiotic factors currently limit their distribution. Observations that budding was lower under low pH treatments suggest that rates of asexual reproduction will likely be much slower in the future. We consider that A . nr mordens polyps are likely to tolerate future conditions but are unlikely to thrive in the long term. However, if polyps can overcome potential ecological boundaries and acidification proceeds slowly A . nr mordens could expand polewards in the short-term. This article is protected by copyright. All rights reserved.
    Print ISSN: 1354-1013
    Electronic ISSN: 1365-2486
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Geography
    Published by Wiley
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  • 5
    Publication Date: 2016-03-09
    Description: While elasticity is a defining characteristic of the Earth's lithosphere, it is often ignored in numerical models of long-term tectonic processes in favour of a simpler viscoplastic description. Here we assess the consequences of this assumption on a well-studied geodynamic problem: the growth of normal faults at an extensional plate boundary. We conduct 2-D numerical simulations of extension in elastoplastic and viscoplastic layers using a finite difference, particle-in-cell numerical approach. Our models simulate a range of faulted layer thicknesses and extension rates, allowing us to quantify the role of elasticity on three key observables: fault-induced topography, fault rotation, and fault life span. In agreement with earlier studies, simulations carried out in elastoplastic layers produce rate-independent lithospheric flexure accompanied by rapid fault rotation and an inverse relationship between fault life span and faulted layer thickness. By contrast, models carried out with a viscoplastic lithosphere produce results that may qualitatively resemble the elastoplastic case, but depend strongly on the product of extension rate and layer viscosity U x L . When this product is high, fault growth initially generates little deformation of the footwall and hanging wall blocks, resulting in unrealistic, rigid block-offset in topography across the fault. This configuration progressively transitions into a regime where topographic decay associated with flexure is fully accommodated within the numerical domain. In addition, high U x L favours the sequential growth of multiple short-offset faults as opposed to a large-offset detachment. We interpret these results by comparing them to an analytical model for the fault-induced flexure of a thin viscous plate. The key to understanding the viscoplastic model results lies in the rate-dependence of the flexural wavelength of a viscous plate, and the strain rate dependence of the force increase associated with footwall and hanging wall bending. This behaviour produces unrealistic deformation patterns that can hinder the geological relevance of long-term rifting models that assume a viscoplastic rheology.
    Keywords: Geodynamics and Tectonics
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
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  • 6
    Publication Date: 2015-05-30
    Description: We report on simultaneous observations of the magnetar SGR J1745–2900 at frequencies = 2.54–225 GHz using the Nançay 94-m equivalent, Effelsberg 100-m, and IRAM 30-m radio telescopes. We detect SGR J1745–2900 up to 225 GHz, the highest radio frequency detection of pulsed emission from a neutron star to date. Strong single pulses are also observed from 4.85 up to 154 GHz. At the millimetre band we see significant flux density and spectral index variabilities on time scales of tens of minutes, plus variability between days at all frequencies. Additionally, SGR J1745–2900 was observed at a different epoch at frequencies = 296–472 GHz using the APEX 12-m radio telescope, with no detections. Over the period MJD 56859.83-56862.93 the fitted spectrum yields a spectral index of 〈α〉 = –0.4 ± 0.1 for a reference flux density 〈 S 154 〉 = 1.1 ± 0.2 mJy (with S α ), a flat spectrum alike those of the other radio-loud magnetars. These results show that strongly magnetized neutron stars can be effective radio emitters at frequencies notably higher to what was previously known and that pulsar searches in the Galactic Centre are possible in the millimetre band.
    Print ISSN: 1745-3925
    Electronic ISSN: 1745-3933
    Topics: Physics
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  • 7
    Publication Date: 2016-08-11
    Description: The NF-κB signaling cascade relays external signals essential for B-cell growth and survival. This cascade is frequently hijacked by cancers that arise from the malignant transformation of germinal center (GC) B cells, underscoring the importance of deciphering the function of NF-κB in these cells. The NF-κB signaling cascade is comprised...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 8
    Publication Date: 2016-09-07
    Description: T helper 17 (TH17) cells represent a discrete TH cell subset instrumental in the immune response to extracellular bacteria and fungi. However, TH17 cells are considered to be detrimentally involved in autoimmune diseases like multiple sclerosis (MS). In contrast to TH17 cells, regulatory T (Treg) cells were shown to be...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 9
    Publication Date: 2015-04-10
    Description: We present optical and near-infrared (NIR) photometry of 28 gamma-ray bursts (GRBs) detected by the Swift satellite and rapidly observed by the Reionization and Transients Infrared/Optical (RATIR) camera. We compare the optical flux at fiducial times of 5.5 and 11 h after the high-energy trigger to that in the X-ray regime to quantify optical darkness. 46 ± 9 per cent (13/28) of all bursts in our sample and 55 ± 10 per cent (13/26) of long GRBs are optically dark, which is statistically consistently with previous studies. Fitting RATIR optical and NIR spectral energy distributions of 19 GRBs, most (6/7) optically dark GRBs either occur at high redshift ( z  〉 4.5) or have a high dust content in their host galaxies ( A V  〉 0.3). Performing Kolmogorov–Smirnov tests, we compare the RATIR sample to those previously presented in the literature, finding our distributions of redshift, optical darkness, host dust extinction and X-ray-derived column density to be consistent. The one reported discrepancy is with host galaxy dust content in the BAT6 sample, which appears inconsistent with our sample and other previous literature. Comparing X-ray-derived host galaxy hydrogen column densities to host galaxy dust extinction, we find that GRBs tend to occur in host galaxies with a higher metal-to-dust ratio than our own Galaxy, more akin to the Large and Small Magellanic Clouds. Finally, to mitigate time evolution of optical darkness, we measure β OX, rest at a fixed rest-frame time, t rest  = 1.5 h and fixed rest-frame energies in the X-ray and optical regimes. Choosing to evaluate optical flux at rest = 0.25 μm, we remove high redshift as a source of optical darkness, demonstrating that optical darkness must result from either high redshift, dust content in the host galaxy along the GRB sight line, or a combination of the two.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
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  • 10
    Publication Date: 2012-04-05
    Description: Synoptic messages (SYNOP) exchanged internationally for operational weather forecasting are regularly used to extend validated (quality controlled) daily climate time series to the present day, despite differences in measuring intervals and lack of validation. Here we focus on the effect of this on derived climate indices of extremes in Europe. Validated time series are taken from the European Climate Assessment & Dataset (ECA&D). Validated data and SYNOP over the period 01 April 1982 to 31 December 2004 are compared. The distribution of the difference series of validated data and SYNOP is skewed. Generally, minimum temperatures are lower or equal in the validated series, while maximum temperatures are higher or equal. This is at least partly due to the 24-hour (validated data) versus 12-hour (SYNOP) measuring intervals. The precipitation results are dependent on the difference between the measuring intervals of both time series. Time series of indices of extremes exhibit a non-climatic inhomogeneity for several indices when SYNOP are used to extend the validated series, leading to spurious trends. The sizes of the trends in pure validated and pure SYNOP series are generally in good agreement, but the absolute values of the indices show an offset. Accepting a trend error of 10%, the averaged winter minimum and maximum temperature and the number of tropical nights (minimum temperature 〉20°C) in summer allow only a very small fraction of SYNOP in the extended series (about 5–10%), while for the other indices studied here a larger fraction can be used (up to 50%).
    Print ISSN: 0148-0227
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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