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  • 1
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    PANGAEA
    In:  Supplement to: Endo, H; Sugie, Koji; Yoshimura, T; Suzuki, Koji (2015): Effects of CO2 and iron availability on rbcL gene expression in Bering Sea diatoms. Biogeosciences, 12(7), 2247-2259, https://doi.org/10.5194/bg-12-2247-2015
    Publication Date: 2024-03-15
    Description: Iron (Fe) can limit phytoplankton productivity in approximately 40% of the global ocean, including in high-nutrient, low-chlorophyll (HNLC) waters. However, there is little information available on the impact of CO2-induced seawater acidification on natural phytoplankton assemblages in HNLC regions. We therefore conducted an on-deck experiment manipulating CO2 and Fe using Fe-deficient Bering Sea water during the summer of 2009. The concentrations of CO2 in the incubation bottles were set at 380 and 600 ppm in the non-Fe-added (control) bottles and 180, 380, 600, and 1000 ppm in the Fe-added bottles. The phytoplankton assemblages were primarily composed of diatoms followed by haptophytes in all incubation bottles as estimated by pigment signatures throughout the 5-day (control) or 6-day (Fe-added treatment) incubation period. At the end of incubation, the relative contribution of diatoms to chlorophyll a biomass was significantly higher in the 380 ppm CO2 treatment than in the 600 ppm treatment in the controls, whereas minimal changes were found in the Fe-added treatments. These results indicate that, under Fe-deficient conditions, the growth of diatoms could be negatively affected by the increase in CO2 availability. To further support this finding, we estimated the expression and phylogeny of rbcL (which encodes the large subunit of RuBisCO) mRNA in diatoms by quantitative reverse transcription polymerase chain reaction (PCR) and clone library techniques, respectively. Interestingly, regardless of Fe availability, the transcript abundance of rbcL decreased in the high CO2 treatments (600 and 1000 ppm). The present study suggests that the projected future increase in seawater pCO2 could reduce the RuBisCO transcription of diatoms, resulting in a decrease in primary productivity and a shift in the food web structure of the Bering Sea.
    Keywords: 19-Hexanoyloxyfucoxanthin; 19-Hexanoyloxyfucoxanthin, standard deviation; Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Bering_Sea_OA; Bicarbonate ion; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Class; Contribution; Day of experiment; Deoxyribonucleic acid, complementary; Deoxyribonucleic acid, complementary, standard deviation; Entire community; EXP; Experiment; Family; FIA with chemiluminescence detection; Fucoxanthin; Fucoxanthin, standard deviation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gene copies; Gene copies, standard deviation; Gene expression (incl. proteomics); High Performance Liquid Chromatography (HPLC); HPLC/CHEMTAX (Mackey et al. 1996); Iron, dissolved; Iron, dissolved, standard deviation; Laboratory experiment; Micro-nutrients; Nitrate; Nitrate, standard deviation; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Open ocean; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Phosphate; Phosphate, standard deviation; Potentiometric titration; Quantitative reverse transcription polymerase chain reaction (qRT-PCR); Real-time quantitative polymerase chain reaction (qPCR); Salinity; Silicate; Silicate, standard deviation; Spectrophotometric; Temperate; Temperature, water; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 7562 data points
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  • 2
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    PANGAEA
    In:  Supplement to: Endo, H; Sugie, Koji; Yoshimura, T; Suzuki, Koji (2016): Response of spring diatoms to CO2 availability in the Western North Pacific as determined by next-generation sequencing. PLoS ONE, 11(4), e0154291, https://doi.org/10.1371/journal.pone.0154291
    Publication Date: 2024-03-15
    Description: Next-generation sequencing (NGS) technologies have enabled us to determine phytoplankton community compositions at high resolution. However, few studies have adopted this approach to assess the responses of natural phytoplankton communities to environmental change. Here, we report the impact of different CO2 levels on spring diatoms in the Oyashio region of the western North Pacific as estimated by NGS of the diatom-specific rbcL gene (DNA), which encodes the large subunit of RubisCO. We also examined the abundance and composition of rbcL transcripts (cDNA) in diatoms to assess their physiological responses to changing CO2 levels. A short-term (3-day) incubation experiment was carried out on-deck using surface Oyashio waters under different pCO2 levels (180, 350, 750, and 1000 µatm) in May 2011. During the incubation, the transcript abundance of the diatom-specific rbcL gene decreased with an increase in seawater pCO2 levels. These results suggest that CO2 fixation capacity of diatoms decreased rapidly under elevated CO2 levels. In the high CO2 treatments (750 and 1000 µatm), diversity of diatom-specific rbcL gene and its transcripts decreased relative to the control treatment (350µatm), as well as contributions of Chaetocerataceae, Thalassiosiraceae, and Fragilariaceae to the total population, but the contributions of Bacillariaceae increased. In the low CO2 treatment, contributions of Bacillariaceae also increased together with other eukaryotes. These suggest that changes in CO2 levels can alter the community composition of spring diatoms in the Oyashio region. Overall, the NGS technology provided us a deeper understanding of the response of diatoms to changes in CO2 levels in terms of their community composition, diversity, and photosynthetic physiology.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Bicarbonate ion; Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; CHEMTAX (Lewitus et al., 2005); Chlorophyll a; Chlorophyll a, standard deviation; Community composition and diversity; Confidence interval; Containers and aquaria (20-1000 L or 〈 1 m**2); Contribution; Entire community; EXP; Experiment; Fluorescence-based quantitative real-time PCR (qPCR); Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Group; Growth/Morphology; Growth rate; Growth rate, standard deviation; High Performance Liquid Chromatography (HPLC); Incubation duration; Laboratory experiment; Maximum photochemical quantum yield of photosystem II; Maximum photochemical quantum yield of photosystem II, standard deviation; Next-generation sequencing (NGS); Nitrate; Nitrate, standard deviation; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Open ocean; Operational taxonomic unit; Oyashio; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; Percentage; pH; pH, standard deviation; Phosphate; Phosphate, standard deviation; Potentiometric titration; rbcL gene, copy number; rbcL gene, copy number, standard deviation; rbcL transcript, copy number; rbcL transcript, copy number, standard deviation; Salinity; Shannon Diversity Index; Silicate; Silicate, standard deviation; Simpson index of diversity; Taxon/taxa; Temperate; Temperature, water; Treatment; Type
    Type: Dataset
    Format: text/tab-separated-values, 8270 data points
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  • 3
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    PANGAEA
    In:  Supplement to: Sugie, Koji; Endo, H; Suzuki, Koji; Nishioka, Jun; Kiyosawa, H; Yoshimura, T (2013): Synergistic effects of pCO2 and iron availability on nutrient consumption ratio of the Bering Sea phytoplankton community. Biogeosciences, 10(10), 6309-6321, https://doi.org/10.5194/bg-10-6309-2013
    Publication Date: 2024-03-15
    Description: Little is known concerning the effect of CO2 on phytoplankton ecophysiological processes under nutrient and trace element-limited conditions, because most CO2 manipulation experiments have been conducted under elements-replete conditions. To investigate the effects of CO2 and iron availability on phytoplankton ecophysiology, we conducted an experiment in September 2009 using a phytoplankton community in the iron limited, high-nutrient, low-chlorophyll (HNLC) region of the Bering Sea basin . Carbonate chemistry was controlled by the bubbling of the several levels of CO2 concentration (180, 380, 600, and 1000 ppm) controlled air, and two iron conditions were established, one with and one without the addition of inorganic iron. We demonstrated that in the iron-limited control conditions, the specific growth rate and the maximum photochemical quantum efficiency (Fv/Fm) of photosystem (PS) II decreased with increasing CO2 levels, suggesting a further decrease in iron bioavailability under the high-CO2 conditions. In addition, biogenic silica to particulate nitrogen and biogenic silica to particulate organic carbon ratios increased from 2.65 to 3.75 and 0.39 to 0.50, respectively, with an increase in the CO2 level in the iron-limited controls. By contrast, the specific growth rate, Fv/Fm values and elemental compositions in the iron-added treatments did not change in response to the CO2 variations, indicating that the addition of iron canceled out the effect of the modulation of iron bioavailability due to the change in carbonate chemistry. Our results suggest that high-CO2 conditions can alter the biogeochemical cycling of nutrients through decreasing iron bioavailability in the iron-limited HNLC regions in the future.
    Keywords: Alkalinity, total; Ammonium; Aragonite saturation state; Bering_Sea_OA; Bicarbonate ion; Biogenic silica; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, organic, particulate; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chlorophyll a; Community composition and diversity; Coulometric titration; Day of experiment; Entire community; EXP; Experiment; Fluorescence intensity; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Iron, dissolved; Laboratory experiment; Maximum photochemical quantum yield of photosystem II; Maximum photochemical quantum yield of photosystem II, standard deviation; Micro-nutrients; Nitrate and Nitrite; Nitrogen, total, particulate; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Open ocean; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; Percentage; pH; Phosphate; Potentiometric titration; Primary production/Photosynthesis; Salinity; Silicate; Species; Temperate; Temperature, water; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 7241 data points
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  • 4
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    PANGAEA
    In:  Supplement to: Endo, H; Hattori, Hiroshi; Mishima, Tsubasa; Hashida, Gen; Sasaki, H; Nishioka, Jun; Suzuki, Koji (2017): Phytoplankton community responses to iron and CO2 enrichment in different biogeochemical regions of the Southern Ocean. Polar Biology, 40(11), 2143-2159, https://doi.org/10.1007/s00300-017-2130-3
    Publication Date: 2024-03-15
    Description: The ongoing rise in atmospheric CO2 concentration is causing rapid increases in seawater pCO2levels. However, little is known about the potential impacts of elevated CO2 availability on the phytoplankton assemblages in the Southern Ocean's oceanic regions. Therefore, we conducted four incubation experiments using surface seawater collected from the subantarctic zone (SAZ) and the subpolar zone (SPZ) in the Australian sector of the Southern Ocean during the austral summer of 2011-2012. For incubations, FeCl3 solutions were added to reduce iron (Fe) limitation for phytoplankton growth. Ambient and high (~750 µatm) CO2 treatments were then prepared with and without addition of CO2-saturated seawater, respectively. Non-Fe-added (control) treatments were also prepared to assess the effects of Fe enrichment (overall, control, Fe-added, and Fe-and-CO2-added treatments). In the initial samples, the dominant phytoplankton taxa shifted with latitude from haptophytes to diatoms, likely reflecting silicate availability in the water. Under Fe-enriched conditions, increased CO2 level significantly reduced the accumulation of biomarker pigments in haptophytes in the SAZ and AZ, whereas a significant decrease in diatom markers was only detected in the SAZ. The CO2-related changes in phytoplankton community composition were greater in the SAZ, most likely due to the decrease in coccolithophore biomass. Our results suggest that an increase in CO2, if it coincides with Fe enrichment, could differentially affect the phytoplankton community composition in different geographical regions of the Southern Ocean, depending on the locally dominant taxa and environmental conditions.
    Keywords: 19-Hexanoyloxyfucoxanthin; Alkalinity, total; Alkalinity, total, standard deviation; Antarctic; Aragonite saturation state; Bicarbonate ion; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cell density; Chlorophyll a; Community composition and diversity; Entire community; Event label; EXP; Experiment; Fucoxanthin; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Initial slope of the photosynthesis-irradiance curve; Inorganic toxins; Laboratory experiment; Light saturated maximum photosynthetic rate; Light saturated maximum photosynthetic rate per Chlorophyll a; Light saturation; Maximum photochemical quantum yield of photosystem II; OA-ICC; Ocean Acidification International Coordination Centre; Open ocean; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; Percentage; pH; pH, standard deviation; Polar; Primary production/Photosynthesis; rbcL gene, copy number, normalized; Replicate; Salinity; Temperate; Temperature, water; Treatment; Type; UM_11_7_cruise_C02; UM_11_7_cruise_C07; UM_11_7_cruise_D07; UM_11_7_cruise_D13
    Type: Dataset
    Format: text/tab-separated-values, 1456 data points
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  • 5
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    PANGAEA
    In:  Supplement to: Endo, H; Yoshimura, T; Kataoka, Takafumi; Suzuki, Koji (2013): Effects of CO2 and iron availability on phytoplankton and eubacterial community compositions in the northwest subarctic Pacific. Journal of Experimental Marine Biology and Ecology, 439, 160-175, https://doi.org/10.1016/j.jembe.2012.11.003
    Publication Date: 2024-03-15
    Description: On-deck CO2-Fe-manipulated incubation experiments were conducted using surface seawater collected from the Western Subarctic Gyre of the NW Pacific in the summer of 2008 to elucidate the impacts of ocean acidification and Fe enrichment on the abundance and community composition of phytoplankton and eubacteria in the study area. During the incubation, excluding the initial period, the mean partial pressures of CO2 in non-Fe-added bottles were 230, 419, 843, and 1124 µatm, whereas those in Fe-added treatments were 152, 394, 791, and 1008 µatm. Changes in the abundance and community composition of phytoplankton were estimated using HPLC pigment signatures with the program CHEMTAX and flow cytometry. A DGGE fingerprint technique targeting 16S rRNA gene fragments was also used to estimate changes in eubacterial phylotypes during incubation. The Fe addition induced diatom blooms, and subsequently stimulated the growth of heterotrophic bacteria such as Roseobacter, Phaeobacter, and Alteromonas in the post-bloom phase. In both the Fe-limited and Fe-replete treatments, concentrations of 19'-hexanoyloxyfucoxanthin, a haptophyte marker, and the cell abundance of coccolithophores decreased at higher CO2 levels (750 and 1000 ppm), whereas diatoms exhibited little response to the changes in CO2 availability. The abundances of Synechococcus and small eukaryotic phytoplankton (〈10 µm) increased at the higher CO2 levels. DGGE band positions revealed that Methylobacterium of Alphaproteobacteria occurred solely at lower CO2 levels (180 and 380 ppm) during the post-bloom phase. These results suggest that increases in CO2 level could affect not only the community composition of phytoplankton but also that of eubacteria. As these microorganisms play critical roles in the biological carbon pump and microbial loop, our results indicate that the progression of ocean acidification can alter the biogeochemical processes in the study area.
    Keywords: 19-hexanoyloxyfucoxanthin, growth; 19-Hexanoyloxyfucoxanthin, growth, standard deviation; AA; Alkalinity, total; Aragonite saturation state; Autoanalyzer; Bacteria, heterotrophic; Bacteria, heterotrophic, standard deviation; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; CHEMTAX (Lewitus et al., 2005); Chlorophyll a; Chlorophyll a, standard deviation; Chlorophytes; Community composition and diversity; Coulometric titration; Cryptophytes; Cyanobacteria; DATE/TIME; DEPTH, water; Diatoms; Dinophytes; Entire community; Fucoxanthin, growth; Fucoxanthin, growth, standard deviation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Haptophytes; High Performance Liquid Chromatography (HPLC); Incubation duration; Laboratory experiment; Maximum photochemical quantum yield of photosystem II; Maximum photochemical quantum yield of photosystem II, standard deviation; Micro-nutrients; Nitrate; Nitrogen/Phosphorus uptake ratio; Nitrogen/Phosphorus uptake ratio, standard deviation; North Atlantic; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Open ocean; PAM (PhytoPAM, Phyto-ED Walz, PPAA0138); Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagophytes; Pelagos; pH; Phosphate; Pigments, Turner fluorometer; Potentiometric titration; Prasinophytes; Primary production/Photosynthesis; Salinity; Silicate; Silicon/Nitrogen uptake ratio; Silicon/Nitrogen uptake ratio, standard deviation; Synechococcus spp.; Synechococcus spp., standard deviation; Temperate; Temperature, water; Treatment; Ultraphytoplankton, eukaryotic; Ultraphytoplankton, eukaryotic, standard deviation; Water sample; WS; WSG_water
    Type: Dataset
    Format: text/tab-separated-values, 1965 data points
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  • 6
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 115 (2001), S. 9563-9577 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Neutron Spin Echo and Dynamic Light Scattering techniques are used for an extensive investigation of the bicontinuous phase in water/decane microemulsions. The dynamical behavior of different surfactant systems, decyl polyglycol ether (C10E4), C10E4 mixed with polyethylenepropylene/polyethyleneoxide amphiphilic block-copolymers-(PEPx/PEOy), and sodium-bisethylhexylsulfosuccinate (AOT) is investigated under comparable conditions. At scattering wave numbers q large compared to the inverse of the structure length scale, q0=2π/d, always stretched exponential relaxations ∝e−(Γqt)β with Γq∝q3 are found, as predicted theoretically. The relaxation rate increases almost linearly as function of the bicontinuous structure correlation scale—ξ(similar, equals)d/2. The apparent bare bending modulus κ determined by fitting theoretical predictions to the experimental high-q data yields values of about 1.3kBT—as inferred from previous small angle neutron scattering (SANS) studies and from other methods. The effect of increasing rigidity of the surfactant layers by anchoring amphiphilic block-copolymers, predicted theoretically and revealed experimentally in structural investigations, could not be clearly resolved due to its small influence on the dynamics. At structural length scales, the relaxation rate in water–oil contrast shows a minimum corresponding to the maximum of the static structure factor. At length scales much larger than the typical structure length the relaxation is single-exponential with a q2 dependent rate. In this regime we find indications of the additional membrane interaction due to the presence of block-copolymers. © 2001 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 115 (2001), S. 580-600 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The effect of amphiphilic diblock copolymers of several molecular weights on the structure and phase behavior of ternary amphiphilic systems (water, oil, and nonionic surfactant) is investigated. Small amounts of amphiphilic block copolymer polyethyleneoxide–polyethylpropylene lead to a dramatic decrease of the amount of total surfactant needed to solubilize given equal volumes of water and oil in a bicontinuous microemulsion. Neutron scattering experiments employing a high-precision two-dimensional contrast variation technique demonstrate that the polymer is distributed uniformly on the surfactant membrane. Based on these observations, we propose a mechanism for the enhancement of swelling behavior, which is due to the variation of the membrane curvature elasticity by polymer mushrooms anchored to the interface. © 2001 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochemical and Biophysical Research Communications 49 (1972), S. 1241-1248 
    ISSN: 0006-291X
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochemical and Biophysical Research Communications 127 (1985), S. 896-902 
    ISSN: 0006-291X
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochemical and Biophysical Research Communications 52 (1973), S. 254-262 
    ISSN: 0006-291X
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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