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  • 1
    Publication Date: 2015-06-11
    Description: Retroviral integration is catalysed by a tetramer of integrase (IN) assembled on viral DNA ends in a stable complex, known as the intasome. How the intasome interfaces with chromosomal DNA, which exists in the form of nucleosomal arrays, is currently unknown. Here we show that the prototype foamy virus (PFV) intasome is proficient at stable capture of nucleosomes as targets for integration. Single-particle cryo-electron microscopy reveals a multivalent intasome-nucleosome interface involving both gyres of nucleosomal DNA and one H2A-H2B heterodimer. While the histone octamer remains intact, the DNA is lifted from the surface of the H2A-H2B heterodimer to allow integration at strongly preferred superhelix location +/-3.5 positions. Amino acid substitutions disrupting these contacts impinge on the ability of the intasome to engage nucleosomes in vitro and redistribute viral integration sites on the genomic scale. Our findings elucidate the molecular basis for nucleosome capture by the viral DNA recombination machinery and the underlying nucleosome plasticity that allows integration.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4530500/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4530500/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Maskell, Daniel P -- Renault, Ludovic -- Serrao, Erik -- Lesbats, Paul -- Matadeen, Rishi -- Hare, Stephen -- Lindemann, Dirk -- Engelman, Alan N -- Costa, Alessandro -- Cherepanov, Peter -- P50 GM082251-06/GM/NIGMS NIH HHS/ -- R01 AI070042/AI/NIAID NIH HHS/ -- R01 AI070042-08/AI/NIAID NIH HHS/ -- England -- Nature. 2015 Jul 16;523(7560):366-9. doi: 10.1038/nature14495. Epub 2015 Jun 10.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Chromatin Structure and Mobile DNA, The Francis Crick Institute, Blanche Lane, South Mimms EN6 3LD, UK. ; 1] Architecture and Dynamics of Macromolecular Machines, Clare Hall Laboratories, The Francis Crick Institute, Blanche Lane, South Mimms EN6 3LD, UK [2] National Institute for Biological Standards and Control, Microscopy and Imaging, Blanche Lane, South Mimms EN6 3QG, UK. ; Department of Cancer Immunology and AIDS, Dana-Farber Cancer Institute, 450 Brookline Avenue, Boston, Massachusetts 02215, USA. ; NeCEN, Gorlaeus Laboratory, Einsteinweg 55, Leiden, 2333, the Netherlands. ; Division of Medicine, Imperial College London, St-Mary's Campus, Norfolk Place, London W2 1PG, UK. ; Institute of Virology, Technische Universitat Dresden, Fetscherstr. 74, Dresden 01307, Germany. ; Architecture and Dynamics of Macromolecular Machines, Clare Hall Laboratories, The Francis Crick Institute, Blanche Lane, South Mimms EN6 3LD, UK. ; 1] Chromatin Structure and Mobile DNA, The Francis Crick Institute, Blanche Lane, South Mimms EN6 3LD, UK [2] Division of Medicine, Imperial College London, St-Mary's Campus, Norfolk Place, London W2 1PG, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26061770" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Substitution ; Binding Sites/genetics ; Cryoelectron Microscopy ; DNA/genetics/metabolism/ultrastructure ; Genome/genetics ; Histones/chemistry/metabolism/ultrastructure ; Integrases/metabolism ; Models, Molecular ; Nucleosomes/*chemistry/genetics/ultrastructure/*virology ; Protein Multimerization ; Recombination, Genetic ; Spumavirus/chemistry/genetics/*metabolism/ultrastructure ; *Virus Integration
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Journal of Fluorine Chemistry 58 (1992), S. 276 
    ISSN: 0022-1139
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Journal of Fluorine Chemistry 54 (1991), S. 180 
    ISSN: 0022-1139
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Journal of Fluorine Chemistry 55 (1991), S. 117 
    ISSN: 0022-1139
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Tetrahedron Letters 33 (1992), S. 2817-2820 
    ISSN: 0040-4039
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Zeitschrift für anorganische Chemie 591 (1990), S. 214-220 
    ISSN: 0044-2313
    Keywords: Chemistry ; Inorganic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Reaction of the Two-Component System Trialkylphosphite/Tetrachloromethane with Bifunctional NucleophilesBifunctional nucleophiles such as 1,2-dioles and 2-aminoalcohols react with the two-component system triethylphosphite/tetrachloromethane to cyclic, acyclic and spirocyclic PV compounds. Reaction route and composition of the product mixtures are characterized by the competition of ligand exchange and cyclisation reactions.
    Notes: Bifunktionelle Nucleophile wie 1,2-Diole und 2-Aminoalkohole reagieren mit dem Zweikomponentensystem Triethylphosphit/Tetrachlormethan zu cyclischen, acyclischen und spirocyclischen PV-Verbindungen. Kennzeichnend für den Reaktionsverlauf und die Zusammensetzung der Reaktionsgemische ist die Konkurrenz von Ligandenaustausch- und Ringschlußreaktionen.
    Additional Material: 2 Ill.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Zeitschrift für anorganische Chemie 615 (1992), S. 66-72 
    ISSN: 0044-2313
    Keywords: Fluoridolysis ; oxidative fluorination ; fluorophosphates ; fluorophospholanes ; fluorospirophosphoranes ; triethylamin-HF-adducts ; Chemistry ; Inorganic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Fluorination of Dioxa- and OxazaphospholanesThe fluoridolysis of cyclic esters and esteramides of phosphorous acid (1, 2, 4, 5, 7, 11, and 12,) using the acid fluorination reagent Et3N · nHF (n 〉 1) or an excess of a basic composed agent (n 〈 1) yields in all cases HPF5- (3,). With stoichiometric amounts of fluoride, however, the fluorophospholanes (4,) and (5,) as well as fac.- and mer.-o- (6a, 6b,) and the spirocyclic fluorohydridophosphate (8,) are obtained. (13,) reacts to (14,) and the spirocyclic compound (15,) gives (16,). The fluorophosphoranes (18,), (19,), and (21,) are obtained by oxidative fluorination of the spiro- or bicyclic P—H compounds 11, 12, and 20, with CCl4/Et3N · nHF (n 〈 1). The oxidative fluorination of the cyclic triesters of phosphorous acid 7, and 23, leads to the cyclic fluorophosphates (22,) and 16, as well as 6., The compounds 18, 19, and 22, are also formed by oxidative fluorination of elemental phosphorus, P4, in the presence of the corresponding bifunctional nucleophile.
    Notes: Die Fluoridolyse cyclischer Ester und Esteramide der phosphorigen Säure (1, 2, 4, 5, 7, 11, und 12,) mit dem sauren Fluorierungsagens Et3N · nHF (n 〉 1) ergibt ebenso wie mit überschüssigem basischen Fluorierungsmittel (n 〈 1) in allen Fällen HPF5- (3). Mit stöchiometrischen Mengen Fluorid werden dagegen die Fluorphospholane (4,) und (5,) sowie fac.- und mer.-o- (6a, 6b,) und das spirocyclische Fluorohydridophosphat (8,) erhalten. (13,) reagiert zu (14,) und die Spiroverbindung (15,) ergibt (16,). Durch oxidative Fluorierung mit der Reagenzkombination · nHF (n 〈 1) werden aus den spiro- bzw. bicyclischen P—H-Verbindungen 11, 12, und 20, die Fluorphosphorane (18,), (19,) und (21) erhalten. Die oxidative Fluorierung cyclischer Triester der phosphorigen Säure (7, 23,) führt zu den cyclischen Fluorophosphaten (22,) und 16, sowie 6., Die Verbindungen 18, 19, und 22, entstehen auch bei der oxidativen Fluorierung von P4 in Gegenwart des entsprechenden bifunktionellen Nucleophils.
    Additional Material: 4 Tab.
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  • 8
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Zeitschrift für anorganische Chemie 606 (1991), S. 219-227 
    ISSN: 0044-2313
    Keywords: Phosphorus ; oxidative degradation ; triethylammonium tris(o-phenylenedioxo)phosphate ; Chemistry ; Inorganic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: On the Oxidative Degradation of Elemental Phosphorus, P4, with CCl4 and 1.2-DinucleophilesIn the presence of tertiary amins the interaction of elemental phosphorus with CCl4 and bifunctionally protic nucleophiles such as 1.2-dioles, pyrocatechol, and 2-aminoalcohols leads to an oxidative degradation of P4. Depending on the reaction conditions acyclic as well as cyclic and even spirocyclic phosphorus(III) and phosphorus(V) compounds are obtained in variable proportions. The formation of the phosphorus(V) spiro compounds exclusively occurs by oxidizing spirocyclic phosphorus(III) compounds in the way of the Atherton-Todd reaction. A procedure for preparing triethylammonium tris(o-phenylenedioxo)phosphate, 8, directly from P4, CCl4, and pyrocatechol is given.
    Notes: Farbloser Phosphor, P4, wird in Gegenwart eines tertiären Amins auch durch Tetrachlormethan und difunktionelle protische Nucleophile wie 1,2-Diole, Brenzcatechol und β-Aminoalkohole oxydativ abgebaut. In Abhängigkeit von der Reaktionsführung und der Art und Konzentration des eingesetzten Nucleophils werden sowohl acyclische als auch cyclische und sogar spirocyclische Phosphor(III)- und Phosphor(V)-Verbindungen in unterschiedlichen Mengenverhältnissen erhalten. Die Bildung der Phosphor(V)-Spiroverbindungen erfolgt ausschließlich durch Oxydation spirocyclischer Phosphor(III)-Verbindungen im Sinne einer Atherton-Todd-Reaktion. Für Triethylammonium-tris(o-phenylendioxy)phosphat, 8, wird eine Direktsynthese aus P4, CCl4 und Brenzcatechol angegeben.
    Additional Material: 4 Tab.
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