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  • 1
    Publication Date: 2007-09-18
    Description: Biological nitrogen fixation, the conversion of atmospheric nitrogen to ammonia for biosynthesis, is exclusively performed by a few bacteria and archaea. Despite the essential importance of biological nitrogen fixation, it has been impossible to quantify the incorporation of nitrogen by individual bacteria or to map the fate of fixed nitrogen in host cells. In this study, with multi-isotope imaging mass spectrometry we directly imaged and measured nitrogen fixation by individual bacteria within eukaryotic host cells and demonstrated that fixed nitrogen is used for host metabolism. This approach introduces a powerful way to study microbes and global nutrient cycles.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lechene, Claude P -- Luyten, Yvette -- McMahon, Gregory -- Distel, Daniel L -- P41 EB001974/EB/NIBIB NIH HHS/ -- New York, N.Y. -- Science. 2007 Sep 14;317(5844):1563-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉National Resource for Imaging Mass Spectrometry, Harvard Medical School, and Brigham and Women's Hospital, 65 Landsdowne Street, Cambridge, MA 02139, USA. cpl@harvard.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/17872448" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bivalvia/*metabolism/*microbiology ; Gammaproteobacteria/*metabolism/ultrastructure ; Gills/metabolism/microbiology/ultrastructure ; Microscopy, Electron, Transmission ; Nitrogen/metabolism ; *Nitrogen Fixation ; Nitrogen Isotopes/metabolism ; Spectrometry, Mass, Secondary Ion ; *Symbiosis
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2012-01-17
    Description: Hair cells of the inner ear are not normally replaced during an animal's life, and must continually renew components of their various organelles. Among these are the stereocilia, each with a core of several hundred actin filaments that arise from their apical surfaces and that bear the mechanotransduction apparatus at their tips. Actin turnover in stereocilia has previously been studied by transfecting neonatal rat hair cells in culture with a beta-actin-GFP fusion, and evidence was found that actin is replaced, from the top down, in 2-3 days. Overexpression of the actin-binding protein espin causes elongation of stereocilia within 12-24 hours, also suggesting rapid regulation of stereocilia lengths. Similarly, the mechanosensory 'tip links' are replaced in 5-10 hours after cleavage in chicken and mammalian hair cells. In contrast, turnover in chick stereocilia in vivo is much slower. It might be that only certain components of stereocilia turn over quickly, that rapid turnover occurs only in neonatal animals, only in culture, or only in response to a challenge like breakage or actin overexpression. Here we quantify protein turnover by feeding animals with a (15)N-labelled precursor amino acid and using multi-isotope imaging mass spectrometry to measure appearance of new protein. Surprisingly, in adult frogs and mice and in neonatal mice, in vivo and in vitro, the stereocilia were remarkably stable, incorporating newly synthesized protein at 〈10% per day. Only stereocilia tips had rapid turnover and no treadmilling was observed. Other methods confirmed this: in hair cells expressing beta-actin-GFP we bleached fiducial lines across hair bundles, but they did not move in 6 days. When we stopped expression of beta- or gamma-actin with tamoxifen-inducible recombination, neither actin isoform left the stereocilia, except at the tips. Thus, rapid turnover in stereocilia occurs only at the tips and not by a treadmilling process.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3267870/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3267870/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhang, Duan-Sun -- Piazza, Valeria -- Perrin, Benjamin J -- Rzadzinska, Agnieszka K -- Poczatek, J Collin -- Wang, Mei -- Prosser, Haydn M -- Ervasti, James M -- Corey, David P -- Lechene, Claude P -- 2P41RR0112553-12/RR/NCRR NIH HHS/ -- F32DC009539/DC/NIDCD NIH HHS/ -- P41EB001974/EB/NIBIB NIH HHS/ -- P41RR14579/RR/NCRR NIH HHS/ -- R01 AR042423/AR/NIAMS NIH HHS/ -- R01 AR042423-08/AR/NIAMS NIH HHS/ -- R01 AR049899/AR/NIAMS NIH HHS/ -- R01 DC000033/DC/NIDCD NIH HHS/ -- R01 DC002281/DC/NIDCD NIH HHS/ -- R01AR049899/AR/NIAMS NIH HHS/ -- R01D K58762/PHS HHS/ -- R01DC00033/DC/NIDCD NIH HHS/ -- R01DC02281/DC/NIDCD NIH HHS/ -- R01DC03463/DC/NIDCD NIH HHS/ -- R01DC04179/DC/NIDCD NIH HHS/ -- R01EY12963/EY/NEI NIH HHS/ -- R01GM47214/GM/NIGMS NIH HHS/ -- R37DK39773/DK/NIDDK NIH HHS/ -- WT079643/Wellcome Trust/United Kingdom -- Howard Hughes Medical Institute/ -- England -- Nature. 2012 Jan 15;481(7382):520-4. doi: 10.1038/nature10745.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Neurobiology, Harvard Medical School and Howard Hughes Medical Institute, Boston, Massachusetts 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22246323" target="_blank"〉PubMed〈/a〉
    Keywords: Actins/metabolism ; Animals ; Animals, Newborn ; Bleaching Agents ; Chickens ; Epithelium/drug effects/metabolism ; Fiducial Markers ; Hair Cells, Auditory, Inner/*cytology ; Homologous Recombination/drug effects ; Mass Spectrometry/*methods ; Mice ; Mice, Inbred C57BL ; Proteins/*metabolism ; Rana catesbeiana ; Stereocilia/*metabolism ; Tamoxifen/pharmacology
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2012-01-17
    Description: Mass spectrometry with stable isotope labels has been seminal in discovering the dynamic state of living matter, but is limited to bulk tissues or cells. We developed multi-isotope imaging mass spectrometry (MIMS) that allowed us to view and measure stable isotope incorporation with submicrometre resolution. Here we apply MIMS to diverse organisms, including Drosophila, mice and humans. We test the 'immortal strand hypothesis', which predicts that during asymmetric stem cell division chromosomes containing older template DNA are segregated to the daughter destined to remain a stem cell, thus insuring lifetime genetic stability. After labelling mice with (15)N-thymidine from gestation until post-natal week 8, we find no (15)N label retention by dividing small intestinal crypt cells after a four-week chase. In adult mice administered (15)N-thymidine pulse-chase, we find that proliferating crypt cells dilute the (15)N label, consistent with random strand segregation. We demonstrate the broad utility of MIMS with proof-of-principle studies of lipid turnover in Drosophila and translation to the human haematopoietic system. These studies show that MIMS provides high-resolution quantification of stable isotope labels that cannot be obtained using other techniques and that is broadly applicable to biological and medical research.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3267887/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3267887/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Steinhauser, Matthew L -- Bailey, Andrew P -- Senyo, Samuel E -- Guillermier, Christelle -- Perlstein, Todd S -- Gould, Alex P -- Lee, Richard T -- Lechene, Claude P -- AG032977/AG/NIA NIH HHS/ -- AG034641/AG/NIA NIH HHS/ -- EB001974/EB/NIBIB NIH HHS/ -- K08 DK090147/DK/NIDDK NIH HHS/ -- MC_U117584237/Medical Research Council/United Kingdom -- R01 AG032977/AG/NIA NIH HHS/ -- R01 AG032977-04/AG/NIA NIH HHS/ -- R01 AG040019/AG/NIA NIH HHS/ -- R01 AG040019-02/AG/NIA NIH HHS/ -- U117584237/Medical Research Council/United Kingdom -- England -- Nature. 2012 Jan 15;481(7382):516-9. doi: 10.1038/nature10734.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medicine, Division of Cardiovascular Medicine, Brigham and Women's Hospital, Boston, Massachusetts 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22246326" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Animals, Newborn ; *Cell Division ; DNA/biosynthesis/genetics/metabolism ; Drosophila melanogaster/cytology ; Enterocytes/cytology ; Fibroblasts/cytology ; Humans ; Intestine, Small/cytology ; Isotope Labeling ; Isotopes ; Leukocytes/cytology ; Lipid Metabolism ; Lymphopoiesis ; Mass Spectrometry/*methods ; Mice ; Mice, Inbred C57BL ; Models, Biological ; Stem Cells/*cytology/*metabolism/pathology ; Templates, Genetic ; Thymidine/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2012-12-12
    Description: Although recent studies have revealed that heart cells are generated in adult mammals, the frequency of generation and the source of new heart cells are not yet known. Some studies suggest a high rate of stem cell activity with differentiation of progenitors to cardiomyocytes. Other studies suggest that new cardiomyocytes are born at a very low rate, and that they may be derived from the division of pre-existing cardiomyocytes. Here we show, by combining two different pulse-chase approaches--genetic fate-mapping with stable isotope labelling, and multi-isotope imaging mass spectrometry--that the genesis of cardiomyocytes occurs at a low rate by the division of pre-existing cardiomyocytes during normal ageing, a process that increases adjacent to areas of myocardial injury. We found that cell cycle activity during normal ageing and after injury led to polyploidy and multinucleation, but also to new diploid, mononucleate cardiomyocytes. These data reveal pre-existing cardiomyocytes as the dominant source of cardiomyocyte replacement in normal mammalian myocardial homeostasis as well as after myocardial injury.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3548046/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3548046/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Senyo, Samuel E -- Steinhauser, Matthew L -- Pizzimenti, Christie L -- Yang, Vicky K -- Cai, Lei -- Wang, Mei -- Wu, Ting-Di -- Guerquin-Kern, Jean-Luc -- Lechene, Claude P -- Lee, Richard T -- AG032977/AG/NIA NIH HHS/ -- AG034641/AG/NIA NIH HHS/ -- AG040019/AG/NIA NIH HHS/ -- EB001974/EB/NIBIB NIH HHS/ -- F32 HL108570/HL/NHLBI NIH HHS/ -- K08 DK090147/DK/NIDDK NIH HHS/ -- P41 EB001974/EB/NIBIB NIH HHS/ -- R01 AG040019/AG/NIA NIH HHS/ -- R21 AG034641/AG/NIA NIH HHS/ -- England -- Nature. 2013 Jan 17;493(7432):433-6. doi: 10.1038/nature11682. Epub 2012 Dec 5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Cardiovascular Division, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Cambridge, Massachusetts 02139, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23222518" target="_blank"〉PubMed〈/a〉
    Keywords: Aging/physiology ; Animals ; Cell Cycle ; DNA/biosynthesis ; Female ; *Heart ; Homeostasis ; Isotope Labeling ; Male ; Mammals ; Mass Spectrometry ; Mice ; Myoblasts, Cardiac/cytology ; Myocardial Infarction/genetics/metabolism/pathology ; Myocardium/*cytology/metabolism/pathology ; Myocytes, Cardiac/*cytology/metabolism ; Polyploidy ; *Regeneration
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 5
    Electronic Resource
    Electronic Resource
    Palo Alto, Calif. : Annual Reviews
    Annual Review of Biophysics and Biomolecular Structure 6 (1977), S. 57-85 
    ISSN: 0084-6589
    Source: Annual Reviews Electronic Back Volume Collection 1932-2001ff
    Topics: Biology , Physics
    Type of Medium: Electronic Resource
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  • 6
    ISSN: 0148-7280
    Keywords: ultramicrochemical analysis ; NADH fluorescence intensity ; energy substrates ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology
    Notes: A noninvasive ultramicrofluorometric method for measuring net uptake of glutamine by single preimplantation mouse embryos is described. A linear relationship was found between fluorescence intensity of NADH produced and glutamine concentration (R2 = 0.985). Single embryos were placed in 20 nl drops of medium containing 0.5 mM glutamine, and the medium was sampled after 2 hr incubation at 37°C. Changes in net glutamine uptake were determined in one-cell, two-cell, and eight-cell embryos and blastocysts incubated in medium containing no energy substrates (glucose, pyruvate, and lactate). The median glutamine uptake increased significantly from 0.480 and 0.270 pmoles/embryo/2 hr at the one-cell and two-cell stages, respectively, to 1.610 pmoles/embryo/2 hr at the blastocyst stage. Mean glutamine uptake was compared in the presence or absence of energy substrates at several developmental stages. A highly significant reduction of glutamine uptake in the presence of substrates was observed at the one-cell and two-cell stages of development. At the eight-cell stage, glutamine uptake was only marginally reduced in the presence of substrates, and no effect was found at the blastocyst stage. These data may partially explain the beneficial effect of glutamine on the culture of early mouse embryos through the two-cell block of development.
    Additional Material: 3 Ill.
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  • 7
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Molecular Reproduction and Development 34 (1993), S. 380-390 
    ISSN: 1040-452X
    Keywords: Preimplantation development ; Osmolyte ; Glutamine ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology
    Notes: The development of outbred mouse (CF1) zygotes in vitro has been studied using medium SOM in which the concentrations of NaCl (85, 105, 125 mM), glutamine (0, 1, 2 mM), and betaine (0, 1, 2 mM) were varied. The effects of the compounds were studied using a 33 factorial experimental arrangement. The inhibitory effect of relatively high concentrations of NaCl and the protective effect of glutamine were confirmed. Betaine, an organic osmolyte, can also protect against the deleterious effects of relatively high concentrations of NaCl. The intracellular contents of potassium and sodium have also been measured in single zygotes using X-ray electron probe spectrometry. When medium SOM contains 85 mM or 125 mM NaCl, the intracellular content of Na rises and the content of K decreases. These changes are partially reduced in the presence of 125 mM NaCl if betaine is also in the medium. Betaine has no effect on the intracellular content of K and Na if the concentration of NaCl is 85 mM. These results suggest that organic osmolytes may be required in embryo culture media to prevent excessive changes in the intracellular ionic concentration. © 1993 Wiley-Liss, Inc.
    Additional Material: 6 Ill.
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  • 8
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Sodium, potassium, iron and sulfur contents of single human red cells were measured using electron microprobe microanalysis. Three preparative procedures were compared, and the most reliable technique was found to be spraying of cells onto polished pyrolytic graphite by atomization. Primary standards were prepared by adjusting the intracellular electrolyte content of red cells, eliminating the need to correct for X-ray absorption. Samples were stable under the electron beam during analysis, and could be stored for long periods of time. Strong correlations were found between the X-ray intensities of iron and sulfur and between potassium and sodium. X-ray intensities of potassium and sodium were found to be directly proportional to internal ionic content. Large populations of single cells could be analyzed and the distribution of their elemental content studied.
    Additional Material: 6 Ill.
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  • 9
    Publication Date: 2003-07-01
    Print ISSN: 0034-6748
    Electronic ISSN: 1089-7623
    Topics: Electrical Engineering, Measurement and Control Technology , Physics
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  • 10
    Publication Date: 2004-07-01
    Print ISSN: 0034-6748
    Electronic ISSN: 1089-7623
    Topics: Electrical Engineering, Measurement and Control Technology , Physics
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