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  • 1
    Publication Date: 2016-06-06
    Description: Relativistic reflection models of the X-ray spectrum of the ‘complex’ Narrow Line Seyfert 1 (NLS1) 1H 0707–495 require a high-spin, moderate-inclination, low-mass black hole. With these parameters fixed, the observed optical/UV emission directly determines the mass accretion rate through the outer disc and hence predicts the bolometric luminosity. This is 140–260 times the Eddington limit. Such a disc should power a strong wind, and winds are generically expected to be clumpy. Changing inclination angle with respect to a clumpy wind structure gives a possible explanation for the otherwise puzzling difference between ‘complex’ NLS1 such as 1H 0707–495 and ‘simple’ ones like PG 1244+026. Lines of sight which intercept the wind show deep absorption features at iron from the hot phase of the wind, together with stochastic dips and complex absorption when the clumps occult the X-ray source (complex NLS1), whereas both these features are absent for more face-on inclination (simple NLS1). This geometry is quite different from the clean view of a flat disc which is assumed for the spin measurements in relativistic reflection models, so it is possible that even 1H 0707–495 has low spin. If so, this re-opens the simplest and hence very attractive possibility that high black hole spin is a necessary and sufficient condition to trigger highly relativistic (bulk Lorentz factor ~10–15) jets.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
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  • 2
    Publication Date: 2013-08-22
    Description: We show that disc continuum fitting can be used to constrain black hole spin in a subclass of narrow-line Seyfert 1 (NLS1) active galactic nuclei as their low mass and high mass accretion rate means that the disc peaks at energies just below the soft X-ray bandpass. We apply the technique to the NLS1 PG1244+026, where the optical/UV/X-ray spectrum is consistent with being dominated by a standard disc component. This gives a best estimate for black hole spin which is low, with a firm upper limit of a *  〈0.86. This contrasts with the recent X-ray determinations of (close to) maximal black hole spin in other NLS1 based on relativistic smearing of the iron profile. While our data on PG1244+026 do not have sufficient statistics at high energy to give a good measure of black hole spin from the iron line profile, cosmological simulations predict that black holes with similar masses have similar growth histories and so should have similar spins. This suggests that there is a problem either in our understanding of disc spectra, or/and X-ray reflection or/and the evolution of black hole spin.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
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  • 3
    Publication Date: 2013-12-27
    Description: RE J2248–511 is one of only 14 non-blazar active galactic nuclei (AGN) detected in the far-ultraviolet (FUV) by the ROSAT Wide Field Camera implying a large ultrasoft X-ray flux. This soft X-ray excess is strongly variable on year time-scales, a common property of narrow-line Seyfert 1s, yet its optical line widths classify this source as a broad-lined Seyfert 1 (BLS1). We use four nearly simultaneous optical–X-ray spectral energy distributions (SEDs) spanning 7 yr to study the spectral shape and long-term variability of RE J2248–511. Here we show that the continuum SED for the brightest epoch data set is consistent with the mean SED of a standard quasar, and matches well to that from an XMM –Sloan Digital Sky Survey sample of AGN with 〈 M /M 〉 ~ 10 8 and 〈 L / L Edd 〉 ~ 0.2. All the correlated optical and soft X-ray variability can be due entirely to a major absorption event. The only remarkable aspect of this AGN is that there is no measurable intrinsic X-ray absorption column in the brightest epoch data set. The observed FUV flux is determined by the combination of this and the fact that the source lies within a local absorption ‘hole’. RE J2248–511, whose variable, ultrasoft X-ray flux once challenged its BLS1 classification, demonstrates that characterization of such objects requires multi-epoch, multiwavelength campaigns.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
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  • 4
    Publication Date: 2015-05-30
    Description: We present a simple stochastic quadrant model for calculating the transport and deposition of heavy particles in a fully developed turbulent boundary layer based on the statistics of wall-normal fluid velocity fluctuations obtained from a fully developed channel flow. Individual particles are tracked through the boundary layer via their interactions with a succession of random eddies found in each of the quadrants of the fluid Reynolds shear stress domain in a homogeneous Markov chain process. In this way, we are able to account directly for the influence of ejection and sweeping events as others have done but without resorting to the use of adjustable parameters. Deposition rate predictions for a wide range of heavy particles predicted by the model compare well with benchmark experimental measurements. In addition, deposition rates are compared with those obtained from continuous random walk models and Langevin equation based ejection and sweep models which noticeably give significantly lower deposition rates. Various statistics related to the particle near wall behavior are also presented. Finally, we consider the model limitations in using the model to calculate deposition in more complex flows where the near wall turbulence may be significantly different.
    Print ISSN: 1070-6631
    Electronic ISSN: 1089-7666
    Topics: Physics
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  • 5
    Publication Date: 2016-07-14
    Description: Pentameroides is a large-shelled pentameride brachiopod, which was widespread throughout Laurentia in the early Silurian (Telychian). Evolving from Pentamerus in the early Telychian, it dispersed from its subtropical – high tropical origin to subequatorial intracratonic seas by the late Llandovery. In this study, large collections of reef-dwelling Pentameroides septentrionalis from the Attawapiskat Formation, Akimiski Island, Nunavut, and level-bottom-inhabiting Pentameroides subrectus from the Fossil Hill Formation, Manitoulin Island, Ontario, and the Jupiter Formation, Anticosti Island, Quebec, were biometrically analyzed for seven external morphological features. Bivariate and ordination analysis (principal components analysis) revealed that P. septentrionalis has a more globose, more biconvex shell with a larger ventral umbo than P. subrectus . These morphological differences, coupled with their excellent preservation in shallow-water reefal environments, suggest that P. septentrionalis was adapted to a relatively low-turbulence, hurricane-free, nutrient-stressed environment near the equator (〈10°S) while P. subrectus lived in storm-dominated higher tropical latitudes (~15°S–25°S). This interpretation is corroborated by the morphology of level-bottom-dwelling Harpidium and Sulcipentamerus from the paleoequatorial lower Silurian of North Greenland, which exhibit morphological features similar to those of P. septentrionalis , even though they did not inhabit a reefal environment. Principal components analysis reveals that P. septentrionalis resembles P. subrectus in early ontogeny, suggesting that P. septentrionalis evolved from P. subrectus as it moved northwards from high tropical to near-equatorial settings.
    Print ISSN: 0008-4077
    Electronic ISSN: 1480-3313
    Topics: Geosciences
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  • 6
    Publication Date: 2015-04-19
    Description: We study genome-wide nucleotide diversity in three subspecies of extant chimpanzees using exome capture. After strict filtering, Single Nucleotide Polymorphisms and indels were called and genotyped for greater than 50% of exons at a mean coverage of 35 x per individual. Central chimpanzees ( Pan troglodytes troglodytes ) are the most polymorphic (nucleotide diversity, w = 0.0023 per site) followed by Eastern ( P. t. schweinfurthii ) chimpanzees ( w = 0.0016) and Western ( P. t. verus ) chimpanzees ( w = 0.0008). A demographic scenario of divergence without gene flow fits the patterns of autosomal synonymous nucleotide diversity well except for a signal of recent gene flow from Western into Eastern chimpanzees. The striking contrast in X-linked versus autosomal polymorphism and divergence previously reported in Central chimpanzees is also found in Eastern and Western chimpanzees. We show that the direction of selection statistic exhibits a strong nonmonotonic relationship with the strength of purifying selection S , making it inappropriate for estimating S . We instead use counts in synonymous versus nonsynonymous frequency classes to infer the distribution of S coefficients acting on nonsynonymous mutations in each subspecies. The strength of purifying selection we infer is congruent with the differences in effective sizes of each subspecies: Central chimpanzees are undergoing the strongest purifying selection followed by Eastern and Western chimpanzees. Coding indels show stronger selection against indels changing the reading frame than observed in human populations.
    Electronic ISSN: 1759-6653
    Topics: Biology
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  • 7
    Publication Date: 2016-01-07
    Description: BioGPS ( http://biogps.org ) is a centralized gene-annotation portal that enables researchers to access distributed gene annotation resources. This article focuses on the updates to BioGPS since our last paper (2013 database issue). The unique features of BioGPS, compared to those of other gene portals, are its community extensibility and user customizability. Users contribute the gene-specific resources accessible from BioGPS (‘plugins’), which helps ensure that the resource collection is always up-to-date and that it will continue expanding over time (since the 2013 paper, 162 resources have been added, for a 34% increase in the number of resources available). BioGPS users can create their own collections of relevant plugins and save them as customized gene-report pages or ‘layouts’ (since the 2013 paper, 488 user-created layouts have been added, for a 22% increase in the number of layouts). In addition, we recently updated the most popular plugin, the ‘Gene expression/activity chart’, to include ~6000 datasets (from ~2000 datasets) and we enhanced user interactivity. We also added a new ‘gene list’ feature that allows users to save query results for future reference.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 8
    Publication Date: 2019
    Description: 〈p〉The regeneration of tooth enamel, the hardest biological tissue, remains a considerable challenge because its complicated and well-aligned apatite structure has not been duplicated artificially. We herein reveal that a rationally designed material composed of calcium phosphate ion clusters can be used to produce a precursor layer to induce the epitaxial crystal growth of enamel apatite, which mimics the biomineralization crystalline-amorphous frontier of hard tissue development in nature. After repair, the damaged enamel can be recovered completely because its hierarchical structure and mechanical properties are identical to those of natural enamel. The suggested phase transformation–based epitaxial growth follows a promising strategy for enamel regeneration and, more generally, for biomimetic reproduction of materials with complicated structure.〈/p〉
    Electronic ISSN: 2375-2548
    Topics: Natural Sciences in General
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  • 9
  • 10
    Publication Date: 2015-07-01
    Description: In diverse classes of organic optoelectronic devices, controlling charge injection, extraction, and blocking across organic semiconductor–inorganic electrode interfaces is crucial for enhancing quantum efficiency and output voltage. To this end, the strategy of inserting engineered interfacial layers (IFLs) between electrical contacts and organic semiconductors has significantly advanced organic light-emitting diode...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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