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  • 1
    Publication Date: 2015-06-13
    Description: We derive age constraints for 1639 red giants in the APOKASC sample for which seismic parameters from Kepler , as well as effective temperatures, metallicities and [α/Fe] values from APOGEE DR12 (Apache Point Observatory Galactic Evolution Experiment Data Release 12) are available. We investigate the relation between age and chemical abundances for these stars, using a simple and robust approach to obtain ages. We first derive stellar masses using standard seismic scaling relations, then determine the maximum possible age for each star as function of its mass and metallicity, independently of its evolutionary stage. While the overall trend between maximum age and chemical abundances is a declining fraction of young stars with increasing [α/Fe], at least 14 out of 241 stars with [α/Fe] 〉0.13 are younger than 6 Gyr. Five stars with [α/Fe] ≥0.2 have ages below 4 Gyr. We examine the effect of modifications in the standard seismic scaling relations, as well as the effect of very low helium fractions, but these changes are not enough to make these stars as old as usually expected for α-rich stars (i.e. ages greater than 8–9 Gyr). Such unusual α-rich young stars have also been detected by other surveys, but defy simple explanations in a galaxy evolution context.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
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  • 2
    Publication Date: 2008-01-05
    Description: We used authentication tests developed for ancient DNA to evaluate claims by Asara et al. (Reports, 13 April 2007, p. 280) of collagen peptide sequences recovered from mastodon and Tyrannosaurus rex fossils. Although the mastodon samples pass these tests, absence of amino acid composition data, lack of evidence for peptide deamidation, and association of alpha1(I) collagen sequences with amphibians rather than birds suggest that T. rex does not.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2694913/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2694913/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Buckley, Mike -- Walker, Angela -- Ho, Simon Y W -- Yang, Yue -- Smith, Colin -- Ashton, Peter -- Oates, Jane Thomas -- Cappellini, Enrico -- Koon, Hannah -- Penkman, Kirsty -- Elsworth, Ben -- Ashford, Dave -- Solazzo, Caroline -- Andrews, Phillip -- Strahler, John -- Shapiro, Beth -- Ostrom, Peggy -- Gandhi, Hasand -- Miller, Webb -- Raney, Brian -- Zylber, Maria Ines -- Gilbert, M Thomas P -- Prigodich, Richard V -- Ryan, Michael -- Rijsdijk, Kenneth F -- Janoo, Anwar -- Collins, Matthew J -- 076905/Wellcome Trust/United Kingdom -- Wellcome Trust/United Kingdom -- New York, N.Y. -- Science. 2008 Jan 4;319(5859):33; author reply 33. doi: 10.1126/science.1147046.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉BioArch, Departments of Biology, Archaeology, Chemistry and Technology Facility, University of York, Post Office Box 373, York YO10 5YW, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18174420" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; Bone and Bones/*chemistry ; Collagen/*chemistry ; *Dinosaurs ; *Elephants ; *Fossils ; Mass Spectrometry ; Phylogeny
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2014-07-22
    Description: During the blood stages of malaria, several hundred parasite-encoded proteins are exported beyond the double-membrane barrier that separates the parasite from the host cell cytosol. These proteins have a variety of roles that are essential to virulence or parasite growth. There is keen interest in understanding how proteins are exported and whether common machineries are involved in trafficking the different classes of exported proteins. One potential trafficking machine is a protein complex known as the Plasmodium translocon of exported proteins (PTEX). Although PTEX has been linked to the export of one class of exported proteins, there has been no direct evidence for its role and scope in protein translocation. Here we show, through the generation of two parasite lines defective for essential PTEX components (HSP101 or PTEX150), and analysis of a line lacking the non-essential component TRX2 (ref. 12), greatly reduced trafficking of all classes of exported proteins beyond the double membrane barrier enveloping the parasite. This includes proteins containing the PEXEL motif (RxLxE/Q/D) and PEXEL-negative exported proteins (PNEPs). Moreover, the export of proteins destined for expression on the infected erythrocyte surface, including the major virulence factor PfEMP1 in Plasmodium falciparum, was significantly reduced in PTEX knockdown parasites. PTEX function was also essential for blood-stage growth, because even a modest knockdown of PTEX components had a strong effect on the parasite's capacity to complete the erythrocytic cycle both in vitro and in vivo. Hence, as the only known nexus for protein export in Plasmodium parasites, and an essential enzymic machine, PTEX is a prime drug target.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Elsworth, Brendan -- Matthews, Kathryn -- Nie, Catherine Q -- Kalanon, Ming -- Charnaud, Sarah C -- Sanders, Paul R -- Chisholm, Scott A -- Counihan, Natalie A -- Shaw, Philip J -- Pino, Paco -- Chan, Jo-Anne -- Azevedo, Mauro F -- Rogerson, Stephen J -- Beeson, James G -- Crabb, Brendan S -- Gilson, Paul R -- de Koning-Ward, Tania F -- England -- Nature. 2014 Jul 31;511(7511):587-91. doi: 10.1038/nature13555. Epub 2014 Jul 16.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Macfarlane Burnet Institute for Medical Research and Public Health, Melbourne, 3004, Australia [2] Monash University, Clayton, Victoria, 3800, Australia [3]. ; 1] Deakin University, Waurn Ponds, 3216, Australia [2]. ; Macfarlane Burnet Institute for Medical Research and Public Health, Melbourne, 3004, Australia. ; Deakin University, Waurn Ponds, 3216, Australia. ; 1] Macfarlane Burnet Institute for Medical Research and Public Health, Melbourne, 3004, Australia [2] Monash University, Clayton, Victoria, 3800, Australia. ; National Center for Genetic Engineering and Biotechnology (BIOTEC), Pathum Thani 12120, Thailand. ; The University of Geneva, 1211 Geneva 4, Switzerland. ; The University of Melbourne, Parkville, Victoria, 3010 Australia. ; 1] Macfarlane Burnet Institute for Medical Research and Public Health, Melbourne, 3004, Australia [2] Monash University, Clayton, Victoria, 3800, Australia [3] The University of Melbourne, Parkville, Victoria, 3010 Australia. ; 1] Macfarlane Burnet Institute for Medical Research and Public Health, Melbourne, 3004, Australia [2] Monash University, Clayton, Victoria, 3800, Australia [3] The University of Melbourne, Parkville, Victoria, 3010 Australia [4].〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25043043" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Erythrocytes/metabolism/parasitology ; Heat-Shock Proteins/genetics/*metabolism ; Humans ; Life Cycle Stages/physiology ; Malaria/*parasitology ; Multiprotein Complexes/metabolism ; Plasmodium falciparum/*genetics/*metabolism ; Protein Transport/genetics ; Protozoan Proteins/genetics/*metabolism ; Vacuoles/metabolism/parasitology
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2013-10-19
    Description: : High-quality draft genomes are now easy to generate, as sequencing and assembly costs have dropped dramatically. However, building a user-friendly searchable Web site and database for a newly annotated genome is not straightforward. Here we present Badger, a lightweight and easy-to-install genome exploration environment designed for next generation non-model organism genomes. Availability: Badger is released under the GPL and is available at http://badger.bio.ed.ac.uk/ . We show two working examples: (i) a test dataset included with the source code, and (ii) a collection of four filarial nematode genomes. Contact: mark.blaxter@ed.ac.uk
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
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  • 5
    Publication Date: 2013-08-11
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
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