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  • 1
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    Unknown
    PANGAEA
    In:  Supplement to: Venello, Theresa A; Calosi, Piero; Turner, Lucy M; Findlay, Helen S (2018): Overwintering individuals of the Arctic krill Thysanoessa inermis appear tolerant to short-term exposure to low pH conditions. Polar Biology, 41(2), 341-352, https://doi.org/10.1007/s00300-017-2194-0
    Publication Date: 2024-03-15
    Description: Areas of the Arctic Ocean are already experiencing seasonal variation in low pH/elevated pCO2and are predicted to be the most affected by future ocean acidification (OA). Krill play a fundamental ecological role within Arctic ecosystems, serving as a vital link in the transfer of energy from phytoplankton to higher trophic levels. However, little is known of the chemical habitat occupied by Arctic invertebrate species, and of their responses to changes in seawater pH. Therefore, understanding krill's responses to low pH conditions has important implications for the prediction of how Arctic marine communities may respond to future ocean change. Here, we present natural seawater carbonate chemistry conditions found in the late polar winter (April) in Kongsfjord, Svalbard (79°North) as well as the response of the Arctic krill, Thysanoessa inermis, exposed to a range of low pH conditions. Standard metabolic rate (measured as oxygen consumption) and energy metabolism markers (incl. adenosine triphosphate (ATP) and l-lactate) of T. inermis were examined. We show that after a 7 days experiment with T. inermis, no significant effects of low pH on MO2, ATP and l-lactate were observed. Additionally, we report carbonate chemistry from within Kongsfjord, which showed that the more stratified inner fjord had lower total alkalinity, higher dissolved inorganic carbon, pCO2 and lower pH than the well-mixed outer fjord. Consequently, our results suggest that overwintering individuals of T. inermis may possess sufficient ability to tolerate short-term low pH conditions due to their migratory behaviour, which exposes T. inermis to the naturally varying carbonate chemistry observed within Kongsfjord, potentially allowing T. inermis to tolerate future OA scenarios.
    Keywords: Adenosine 5-Triphosphate, standard deviation; Adenosine triphosphate, per wet mass; Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Arctic; Arthropoda; Bicarbonate ion; Body mass; Body mass, standard deviation; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Kongsfjord_centremost; Laboratory experiment; Lactate; Lactate, standard deviation; OA-ICC; Ocean Acidification International Coordination Centre; Open ocean; Other metabolic rates; Oxygen consumption, per mass; Oxygen consumption, standard deviation; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Polar; Potentiometric; Potentiometric titration; Registration number of species; Replicates; Respiration; Salinity; Salinity, standard deviation; Single species; Species; Temperature, water; Temperature, water, standard deviation; Thysanoessa inermis; Type; Uniform resource locator/link to reference; Zooplankton
    Type: Dataset
    Format: text/tab-separated-values, 172 data points
    Location Call Number Expected Availability
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  • 2
    Publication Date: 2024-03-15
    Description: Physiological responses to temperature are known to be a major determinant of species distributions and can dictate the sensitivity of populations to global warming. In contrast, little is known about how other major global change drivers, such as ocean acidification (OA), will shape species distributions in the future. Here, by integrating population genetics with experimental data for growth and mineralization, physiology and metabolomics, we demonstrate that the sensitivity of populations of the gastropod Littorina littorea to future OA is shaped by regional adaptation. Individuals from populations towards the edges of the natural latitudinal range in the Northeast Atlantic exhibit greater shell dissolution and the inability to upregulate their metabolism when exposed to low pH, thus appearing most sensitive to low seawater pH. Our results suggest that future levels of OA could mediate temperature-driven shifts in species distributions, thereby influencing future biogeography and the functioning of marine ecosystems.
    Keywords: Adenosine 5-Triphosphate; Alkalinity, total; Alkalinity, total, standard error; Animalia; Aragonite saturation state; Aragonite saturation state, standard error; Benthic animals; Benthos; Bicarbonate ion; Bicarbonate ion, standard error; Calcification/Dissolution; Calcite saturation state; Calcite saturation state, standard error; Calcium; Calcium/Strontium ratio; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard error; Carbonate ion; Carbonate ion, standard error; Carbonate system computation flag; Carbon dioxide; Change; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Experiment duration; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Laboratory experiment; Latitude, additional; Littorina littorea; Magnesium; Magnesium/Calcium ratio; Magnesium/Strontium ratio; Mollusca; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Oxygen; Oxygen, standard error; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error; pH; pH, standard error; Polar; Potassium; Potentiometric; Potentiometric titration; Registration number of species; Respiration; Respiration rate, oxygen, per wet mass; Salinity; Salinity, standard error; Single species; Species; Strontium; Temperate; Temperature, water; Temperature, water, standard error; Treatment; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 7410 data points
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  • 3
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    Unknown
    PANGAEA
    In:  Supplement to: Turner, Lucy M; Ricevuto, Elena; Massa Gallucci, Alexia; Lorenti, Maurizio; Gambi, Maria Cristina; Calosi, Piero (2016): Metabolic responses to high pCO2 conditions at a CO2 vent site in juveniles of a marine isopod species assemblage. Marine Biology, 163(10), https://doi.org/10.1007/s00227-016-2984-x
    Publication Date: 2024-03-15
    Description: We are starting to understand the relationship between metabolic rate responses and species' ability to respond to exposure to high pCO2. However, most of our knowledge has come from investigations of single species. The examination of metabolic responses of closely related species with differing distributions around natural elevated CO2 areas may be useful to inform our understanding of their adaptive significance. Furthermore, little is known about the physiological responses of marine invertebrate juveniles to high pCO2, despite the fact they are known to be sensitive to other stressors, often acting as bottlenecks for future species success. We conducted an in situ transplant experiment using juveniles of isopods found living inside and around a high pCO2 vent (Ischia, Italy): the CO2 'tolerant' Dynamene bifida and 'sensitive' Cymodoce truncata and Dynamene torelliae. This allowed us to test for any generality of the hypothesis that pCO2 sensitive marine invertebrates may be those that experience trade-offs between energy metabolism and cellular homoeostasis under high pCO2 conditions. Both sensitive species were able to maintain their energy metabolism under high pCO2 conditions, but in C. truncata this may occur at the expense of [carbonic anhydrase], confirming our hypothesis. By comparison, the tolerant D. bifida appeared metabolically well adapted to high pCO2, being able to upregulate ATP production without recourse to anaerobiosis. These isopods are important keystone species; however, given they differ in their metabolic responses to future pCO2, shifts in the structure of the marine ecosystems they inhabit may be expected under future ocean acidification conditions.
    Keywords: Adenosine 5-Triphosphate, standard error; Adenosine triphosphate, per unit protein; Alkalinity, total; Alkalinity, total, standard error; Animalia; Aragonite saturation state; Aragonite saturation state, standard error; Arthropoda; Benthic animals; Benthos; Bicarbonate ion; Bicarbonate ion, standard error; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calcite saturation state, standard error; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard error; Carbonate ion; Carbonate ion, standard error; Carbonate system computation flag; Carbon dioxide; Carbonic anhydrase activity, per protein; Carbonic anhydrase activity, standard error; Castello_Aragonese_south; CO2 vent; Coast and continental shelf; Cymodoce truncata; Dynamene bifida; Dynamene torelliae; Event label; EXP; Experiment; Field experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); L-lactate; L-lactate, standard error; Mediterranean Sea; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error; pH; pH, standard error; Registration number of species; Replicates; Salinity; Salinity, standard error; San_Pietro_promontory; Single species; Species; St_Anna_rocks; Station label; Survival; Temperate; Temperature, water; Temperature, water, standard error; Treatment; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 930 data points
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  • 4
    Publication Date: 2024-04-20
    Description: Platynereis spp. were collected via snorkelling or scuba from either inside (40°43′53″N, 13°57′47″E) or outside (40°43'33.33N, 13°57'36.38E and 40°44′48″N, 13°56′39″E) the carbon dioxide (CO2) vent on the island of Ischia (Italy) and used in a reciprocal transplant experiment. The effect of exposure to high or low partial pressures of CO2 (pCO2) conditions on the metabolome (metabolome, and lipidome) of worms from different pCO2 regimes was investigated to understand the effect of exposure to different pCO2 conditions on the cellular physiological response. This experiment was conducted between 04/09/2013 and 16/09/2013. The experiment was staggered during this time so all worms could be processed. After five days exposure to either low or high CO2 conditions worms were snap frozen in liquid nitrogen and shipped to the University of Birmingham for metabolomic analysis which was finalised on 21/01/2016. Metabolomic profiles of worms were characterised using a mass spectrometry approach. A standard mass spectrometry based metabolomics workflow was used to analyse both the polar and lipid extracts from the samples (Kirwan et al. 2014). Raw mass spectral data were processed using the SIM-stitching algorithm, using an in-house Matlab script. The data matrices were normalized using the PQN algorithm. Missing values were imputed using the KNN algorithm. The resulting data matrix was analysed using univariate statistics, described below. The same matrix was transformed using the generalised logarithm to stabilise the technical variance across the measured peaks prior to analysis using multivariate statistics. Signals were putatively annotated with empirical formulae calculated by the MIPack software (Weber et al. 2010), searching the KEGG (Kanehisa et al. 2012) and LipidMaps (Fahy et al. 2007) databases, and confirmed by performing calculations based on the original spectra in Xcalibur 2.0.7 (Thermo Fisher Scientific).
    Keywords: ASSEMBLE_Plus; Association of European Marine Biological Laboratories Expanded; Binary Object; Binary Object (File Size); Castello_Aragonese_A1; Castello_Aragonese_A2; Castello_Aragonese_A3; Castello Aragonese; EXP; Experiment; File content; Punta_San_Pietro_C1; Punta_San_Pietro_C2; Punta_San_Pietro_C3; Punta San Pietro
    Type: Dataset
    Format: text/tab-separated-values, 12 data points
    Location Call Number Expected Availability
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  • 5
    Publication Date: 2024-04-20
    Description: Platynereis spp. were collected via snorkelling or scuba from either inside (40°43′53″N, 13°57′47″E) (stations A1-A3) or outside (40°43'33.33"N, 13°57'36.38"E and 40°44′48″N, 13°56′39″E) (stations C1-C3) the carbon dioxide (CO2) vent on the island of Ischia (Italy) and used in a reciprocal transplant experiment between 04/09/2013 and 16/09/2013. The effect of exposure to high or low partial pressures of CO2 (pCO2) conditions on the proteome and metabolome (metabolome, and lipidome) of worms from different pCO2 regimes was investigated to understand the effect of exposure to different pCO2 conditions on the cellular physiological response. Before and during the transplant experiment water samples were taken to characterise the physio-chemical parameters of sea water used when exposing the worms to: (i) low pCO2 conditions (‘control’ stations C1, C2 and C3) and (ii) high pCO2 conditions (‘acidified’ stations A1, A2, A3). Salinity, temperature, pH NBS (Mettler-Toledo pH meter, Beaumont Leys, UK), total alkalinity (TA) (AS-ALK2, Apollo SciTech, Bogart, USA), dissolved inorganic carbon (DIC), carbon dioxide partial pressure (pCO2), bicarbonate and carbonate ion concentration ([HCO3–] and [CO32–), calcite and aragonite saturation state (Ωcal and Ωara) are provided.
    Keywords: Alkalinity, total; Aragonite saturation state; ASSEMBLE_Plus; Association of European Marine Biological Laboratories Expanded; Bicarbonate ion; Calcite saturation state; Carbon, inorganic, dissolved; Carbonate ion; Carbon dioxide, partial pressure; Castello_Aragonese_A1; Castello_Aragonese_A2; Castello_Aragonese_A3; Castello Aragonese; DATE/TIME; DEPTH, water; Event label; EXP; Experiment; Genus, unique identification; Genus, unique identification (Semantic URI); Genus, unique identification (URI); LATITUDE; Location; LONGITUDE; Method comment; pH; pH meter, Mettler Toledo, Beaumont Leys, UK; Punta_San_Pietro_C1; Punta_San_Pietro_C2; Punta_San_Pietro_C3; Punta San Pietro; Salinity; Species; Station label; Temperature, water; Total Alkalinity Titrator, AS-ALK2, Apollo SciTech, Bogart, USA
    Type: Dataset
    Format: text/tab-separated-values, 3932 data points
    Location Call Number Expected Availability
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  • 6
    Publication Date: 2024-04-20
    Description: Platynereis spp. were collected via snorkelling or scuba from either inside (40°43′53″N, 13°57′47″E) (stations A1-A3) or outside (40°43'33.33"N, 13°57'36.38"E and 40°44′48″N, 13°56′39″E) (stations C1-C3) the carbon dioxide (CO2) vent on the island of Ischia (Italy) and used in a reciprocal transplant experiment. The effect of exposure to high or low partial pressures of CO2 (pCO2) conditions on the proteome of worms from different pCO2 regimes was investigated to understand the effect of exposure to different pCO2 conditions on the cellular physiological response. This experiment was conducted between 04/09/2013 and 16/09/2013. The experiment was staggered during this time so all worms could be processed. After five days exposure to either low or high CO2 conditions worms were snap frozen in liquid nitrogen and shipped to the University of Hong Kong for proteomic analysis which was finalised on 02/08/2015. Proteomic profiles of worms were characterised using a liquid chromatography-mass spectrometry/mass spectrometry triple time of flight (LC-MS/ MS Triple TOF) approach.
    Keywords: ASSEMBLE_Plus; Association of European Marine Biological Laboratories Expanded; Castello_Aragonese_A1; Castello_Aragonese_A2; Castello_Aragonese_A3; Castello Aragonese; EXP; Experiment; Punta_San_Pietro_C1; Punta_San_Pietro_C2; Punta_San_Pietro_C3; Punta San Pietro
    Type: Dataset
    Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet, 127.9 kBytes
    Location Call Number Expected Availability
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  • 7
    Publication Date: 2017-08-04
    Print ISSN: 0722-4060
    Electronic ISSN: 1432-2056
    Topics: Biology
    Published by Springer
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  • 8
  • 9
  • 10
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