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  • 1
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 33 (1988), S. 187-194 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Some aspects of the catalytic mechanism of the serine proteases were submitted to ab initio RHF MO studies at a 3-21G basis set level. Analytical gradients were used to optimize the geometry of the molecular partners and to sense the interactions among them when they make up for the active site in chymotrypsin. Reaction fields of graded strengths were used to sense the response of the active site to protein surrounding effects. The catalytic triad (Asp-His-Ser) is reduced to a model dyad represented by ammonia and methyl alcohol. Methyl acetate represents a substrate. One water molecule is added to the model as a local solvation effect. (This molecule plays a central role in the rupture of the acylated enzyme, which was not studied here). The reaction pathways of MeAc interacting with the alcohol and alcoholate were studied to determine the intrinsic properties of this system in the present level of wave function representation. The presence of the dyad alters the interaction potential of the reacting system. The canonical form in vacuo is significantly more stable than the diionic one. The reaction field produces stabilizing effects favoring the catalytic diionic form. The effect of the tetrahedralization in the substrate has been studied. A planar substrate is strongly repelled at distances shorter than 3.0 Å, whereas a tetrahedral substrate can approach the catalytic dyad in the native configuration without apparent steric hindrance.
    Additional Material: 6 Tab.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 117-128 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The requirements for H2-antagonist activity so far identified for most of the known antagonists of histamine are the presence of a heterocyclic ring containing a basic center linked via a methylene chain to a substituted guanidine or thiourea polar side chain. Metiamide is a potent H2 antagonist (pA2=6.06). We have used the ab initio Hartree-Fock (HF) method in order to study the conformational properties of the N3(SINGLE BOND)H tautomers of metiamide molecule and histamine monocation. Three basis set (the 3-21G*, 6-31G**, and 6-31+G**) were used, the results compared, and the geometric parameters fully optimized. Our results indicate the preference of metiamide for a folded conformation with an intramolecular hydrogen bonding between the imidazole ring and one of the NH groups. The optimized geometrical parameters and charge distributions of both molecules, using the Mulliken, and natural bond order (NBO) analysis, are given and discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 117-128, 1998
    Additional Material: 5 Ill.
    Type of Medium: Electronic Resource
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