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  • 1
    Publication Date: 2017-09-01
    Description: This paper, the second of three, investigates submesoscale dynamics in the northern Gulf of Mexico under the influence of the Mississippi–Atchafalaya River system, using numerical simulations at 500-m horizontal resolution with climatological atmospheric forcing. The Turner angle Tu, a measure of the relative effect of temperature and salinity on density, is examined with respect to submesoscale current generation in runs with and without riverine forcing. Surface Tu probability density functions in solutions including rivers show a temperature-dominated signal offshore, associated with Loop Current water, and a nearshore salinity-dominated signal, associated with fresh river water, without a clear compensating signal, as often found instead in the ocean’s mixed layer. The corresponding probability distribution functions in the absence of rivers differ, illustrating the key role played by the freshwater output in determining temperature–salinity distributions in the northern Gulf of Mexico during both winter and summer. A quantity referred to as temperature–salinity covariance is proposed to determine what fraction of the available potential energy that is released during the generation of submesoscale circulations leads to the destruction of density gradients while leaving spice gradients untouched, thereby leading to compensation. It is shown that the fresh river fronts to the east of the Bird’s Foot can evolve toward compensation in concert with a gradual release of available potential energy. It is further demonstrated that, during winter, the cross-shelf freshwater transport mechanism to the west of the Bird’s Foot is well approximated by a diffusive process, whereas to the east is better represented by a ballistic process associated with the Mississippi water that converges in a jetlike pattern.
    Print ISSN: 0022-3670
    Electronic ISSN: 1520-0485
    Topics: Geosciences , Physics
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  • 2
    Publication Date: 2017-05-19
    Description: The distribution and strength of submesoscale (SM) surface layer fronts and filaments generated through mixed layer baroclinic energy conversion and submesoscale coherent vortices (SCVs) generated by topographic drag are analyzed in numerical simulations of the near-surface southwestern Pacific, north of 16°S. In the Coral Sea a strong seasonal cycle in the surface heat flux leads to a winter SM “soup” consisting of baroclinic mixed layer eddies (MLEs), fronts, and filaments similar to those seen in other regions farther away from the equator. However, a strong wind stress seasonal cycle, largely in sync with the surface heat flux cycle, is also a source of SM processes. SM restratification fluxes show distinctive signatures corresponding to both surface cooling and wind stress. The winter peak in SM activity in the Coral Sea is not in phase with the summer dominance of the mesoscale eddy kinetic energy in the region, implying that local surface layer forcing effects are more important for SM generation than the nonlocal eddy deformation field. In the topographically complex Solomon and Bismarck Seas, a combination of equatorial proximity and boundary drag generates SCVs with large-vorticity Rossby numbers (Ro ~ 10). River outflows in the Bismarck and Solomon Seas make a contribution to SM generation, although they are considerably weaker than the topographic effects. Mean to eddy kinetic energy conversions implicate barotropic instability in SM topographic wakes, with the strongest values seen north of the Vitiaz Strait along the coast of Papua New Guinea.
    Print ISSN: 0022-3670
    Electronic ISSN: 1520-0485
    Topics: Geosciences , Physics
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  • 3
    Publication Date: 2020-06-01
    Description: We present in situ and remote observations of a Mississippi plume front in the Louisiana Bight. The plume propagated freely across the bight, rather than as a coastal current. The observed cross-front circulation pattern is typical of density currents, as are the small width (≈100 m) of the plume front and the presence of surface frontal convergence. A comparison of observations with stratified density current theory is conducted. Additionally, subcritical to supercritical transitions of frontal propagation speed relative to internal gravity wave (IGW) speed are demonstrated to occur. That is in part due to IGW speed reduction with decrease in seabed depth during the frontal propagation toward the shore. Theoretical steady-state density current propagation speed is in good agreement with the observations in the critical and supercritical regimes but not in the inherently unsteady subcritical regime. The latter may be due to interaction of IGW with the front, an effect previously demonstrated only in laboratory and numerical experiments. In the critical regime, finite-amplitude IGWs form and remain locked to the front. A critical to supercritical transition eventually occurs as the ambient conditions change during frontal propagation, after which IGWs are not supported at the front. The subcritical (critical) to critical (supercritical) transition is related to Froude number ahead (under) the front, consistently with theory. Finally, we find that the front-locked IGW (critical) regime is itself dependent on significant nonlinear speed enhancement of the IGW by their growth to finite amplitude at the front.
    Print ISSN: 0022-3670
    Electronic ISSN: 1520-0485
    Topics: Geosciences , Physics
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  • 4
    Publication Date: 2014-05-30
    Description: The Reynolds stress induced by anisotropically forcing an unbounded Couette flow, with uniform shear γ, on a β plane, is calculated in conjunction with the eddy diffusivity of a coevolving passive tracer. The flow is damped by linear drag on a time scale μ−1. The stochastic forcing is white noise in time and its spatial anisotropy is controlled by a parameter α that characterizes whether eddies are elongated along the zonal direction (α 〈 0), are elongated along the meridional direction (α 〉 0), or are isotropic (α = 0). The Reynolds stress varies linearly with α and nonlinearly and nonmonotonically with γ, but the Reynolds stress is independent of β. For positive values of α, the Reynolds stress displays an “antifrictional” effect (energy is transferred from the eddies to the mean flow); for negative values of α, it displays a frictional effect. When γ/μ ≪ 1, these transfers can be identified as negative and positive eddy viscosities, respectively. With γ = β = 0, the meridional tracer eddy diffusivity is , where υ′ is the meridional eddy velocity. In general, nonzero β and γ suppress the eddy diffusivity below . When the shear is strong, the suppression due to γ varies as γ−1 while the suppression due to β varies between β−1 and β−2 depending on whether the shear is strong or weak, respectively.
    Print ISSN: 0022-4928
    Electronic ISSN: 1520-0469
    Topics: Geography , Geosciences , Physics
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  • 5
    Publication Date: 2012-05-01
    Description: Zonostrophic instability leads to the spontaneous emergence of zonal jets on a β plane from a jetless basic-state flow that is damped by bottom drag and driven by a random body force. Decomposing the barotropic vorticity equation into the zonal mean and eddy equations, and neglecting the eddy–eddy interactions, defines the quasilinear (QL) system. Numerical solution of the QL system shows zonal jets with length scales comparable to jets obtained by solving the nonlinear (NL) system. Starting with the QL system, one can construct a deterministic equation for the evolution of the two-point single-time correlation function of the vorticity, from which one can obtain the Reynolds stress that drives the zonal mean flow. This deterministic system has an exact nonlinear solution, which is an isotropic and homogenous eddy field with no jets. The authors characterize the linear stability of this jetless solution by calculating the critical stability curve in the parameter space and successfully comparing this analytic result with numerical solutions of the QL system. But the critical drag required for the onset of NL zonostrophic instability is sometimes a factor of 6 smaller than that for QL zonostrophic instability. Near the critical stability curve, the jet scale predicted by linear stability theory agrees with that obtained via QL numerics. But on reducing the drag, the emerging QL jets agree with the linear stability prediction at only short times. Subsequently jets merge with their neighbors until the flow matures into a state with jets that are significantly broader than the linear prediction but have spacing similar to NL jets.
    Print ISSN: 0022-4928
    Electronic ISSN: 1520-0469
    Topics: Geography , Geosciences , Physics
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  • 6
    Publication Date: 2019-06-01
    Description: Oceanic surface submesoscale currents are characterized by anisotropic fronts and filaments with widths from 100 m to a few kilometers; an O(1) Rossby number; and large magnitudes of lateral buoyancy and velocity gradients, cyclonic vorticity, and convergence. We derive an asymptotic model of submeoscale frontogenesis—the rate of sharpening of submesoscale gradients—and show that in contrast with “classical” deformation frontogenesis, the near-surface convergent motions, which are associated with the ageostrophic secondary circulation, determine the gradient sharpening rates. Analytical solutions for the inviscid Lagrangian evolution of the gradient fields in the proposed asymptotic regime are provided, and emphasize the importance of ageostrophic motions in governing frontal evolution. These analytical solutions are further used to derive a scaling relation for the vertical buoyancy fluxes that accompany the gradient sharpening process. Realistic numerical simulations and drifter observations in the northern Gulf of Mexico during winter confirm the applicability of the asymptotic model to strong frontogenesis. Careful analysis of the numerical simulations and field measurements demonstrates that a subtle balance between boundary layer turbulence, pressure, and Coriolis effects (e.g., turbulent thermal wind; Gula et al. 2014) leads to the generation of the surface convergent motions that drive frontogenesis in this region. Because the asymptotic model makes no assumptions about the physical mechanisms that initiate the convergent frontogenetic motions, it is generic for submesoscale frontogenesis of O(1) Rossby number flows.
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    Topics: Geosciences , Physics
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  • 7
    Publication Date: 2019-07-01
    Description: An idealized framework of steady barotropic flow past an isolated seamount in a background of constant stratification (with frequency N) and rotation (with Coriolis parameter f) is used to examine the formation, separation, instability of the turbulent bottom boundary layers (BBLs), and ultimately, the genesis of submesoscale coherent vortices (SCVs) in the ocean interior. The BBLs generate vertical vorticity ζ and potential vorticity q on slopes; the flow separates and spawns shear layers; barotropic and centrifugal shear instabilities form submesoscale vortical filaments and induce a high rate of local energy dissipation; the filaments organize into vortices that then horizontally merge and vertically align to form SCVs. These SCVs have O(1) Rossby numbers () and horizontal and vertical scales that are much larger than those of the separated shear layers and associated vortical filaments. Although the upstream flow is barotropic, downstream baroclinicity manifests in the wake, depending on the value of the nondimensional height , which is the ratio of the seamount height to that of the Taylor height , where L is the seamount half-width. When , SCVs span the vertical extent of the seamount itself. However, for , there is greater range of variation in the sizes of the SCVs in the wake, reflecting the wake baroclinicity caused by the topographic interaction. The aspect ratio of the wake SCVs has the scaling , instead of the quasigeostrophic scaling .
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  • 8
    Publication Date: 2021-03-24
    Description: Current-topography interactions in the ocean give rise to eddies spanning a wide range of spatial and temporal scales. Latest modeling efforts indicate that coastal and underwater topography are important generation sites for submesoscale coherent vortices (SCVs), characterized by horizontal scales of (0.1 – 10) km. Using idealized, submesoscale and BBL-resolving simulations and adopting an integrated vorticity balance formulation, we quantify precisely the role of bottom boundary layers (BBLs) in the vorticity generation process. In particular, we show that vorticity generation on topographic slopes is attributable primarily to the torque exerted by the vertical divergence of stress at the bottom. We refer to this as the Bottom Stress Divergence Torque (BSDT). BSDT is a fundamentally nonconservative torque that appears as a source term in the integrated vorticity budget and is to be distinguished from the more familiar Bottom Stress Curl (BSC). It is closely connected to the bottom pressure torque (BPT) via the horizontal momentum balance at the bottom and is in fact shown to be the dominant component of BPT in solutions with a well-resolved BBL. This suggests an interpretation of BPT as the sum of a viscous, vorticity generating component (BSDT) and an inviscid, ‘flow-turning ’ component. Companion simulations without bottom drag illustrate that although vorticity generation can still occur through the inviscid mechanisms of vortex stretching and tilting, the wake eddies tend to have weaker circulation, be substantially less energetic, and have smaller spatial scales.
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  • 9
    Publication Date: 2021-02-24
    Description: Submesoscale coherent vortices (SCVs) are a ubiquitous feature of topographic wakes in the extratropical oceans. Recent studies demonstrate a mechanism wherein high vorticity bottom boundary layers (BBLs) on the slopes of the topography separate (forming shear layers), undergo instabilities, and subsequently merge in the horizontal and align in the vertical to form vertically coherent, columnar, SCVs (i.e. with low vertical shear). Background rotation is critical to the vertical alignment of unstable vortical filaments into coherent SCVs. In the tropics, however, the weakening of rotation prevents this alignment. Employing an idealized framework of steady barotropic flow past an isolated seamount in a background of constant stratification N and rotation rate f, we examine the wake structure for a range of f values spanning values from the poles to the tropics. We find a systematic increase in the interior vertical shear with decreasing f that manifests as a highly layered wake structure consisting of vertically thin, ‘pancake’ SCVs possessing a high vertical shear. A monotonic increase in the wake energy dissipation rate is concomitantly observed with decreasing f. By examining the evolution equations for the vertical shear and vertical enstrophy, we find that the interior shear generation is an advective process, with the location of peak shear generation approximately colocated with maximum energy dissipation. This leads to the inference that high wake dissipation in tropical tropographic wakes is caused by parameterized shear instabilities induced by interior advective generation of vertical shear in the near wake region.
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  • 10
    Publication Date: 2020-09-11
    Description: Genetic regulation of gene expression, revealed by expression quantitative trait loci (eQTLs), exhibits complex patterns of tissue-specific effects. Characterization of these patterns may allow us to better understand mechanisms of gene regulation and disease etiology. We develop a constrained matrix factorization model, sn-spMF, to learn patterns of tissue-sharing and apply it to 49 human tissues from the Genotype-Tissue Expression (GTEx) project. The learned factors reflect tissues with known biological similarity and identify transcription factors that may mediate tissue-specific effects. sn-spMF, available at https://github.com/heyuan7676/ts_eQTLs, can be applied to learn biologically interpretable patterns of eQTL tissue-specificity and generate testable mechanistic hypotheses.
    Print ISSN: 1465-6906
    Electronic ISSN: 1474-760X
    Topics: Biology
    Published by BioMed Central
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