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  • 1
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Science Inc
    The @journal of eukaryotic microbiology 52 (2005), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Morphological studies and phylogenies of ribosomal RNA, taken together, suggest that excavate protists may be related to each other, but many of the deepest level relationships amongt these organisms remain poorly understood. We have assembled a data set of six slowly evolving nuclear-encoded protein genes that include nine of the 10 recognized excavate groups. Maximum likelihood analyses demonstrate that diplomonads and Carpediemonas than parabasalids are related to each other. They also confirm that Trimastix is specifically related to oxymonads, forming the taxon Preaxostyla. There is strong support for a clade of Euglenozoa, Heterolobsea and jakobids, but, unexpectedly, jakobids and Heterolobosea are robustly recovered as sister taxa. Malawimonas is placed either as sister to Preaxostyla or as sister to the (Euglenozoa, Heterolobosea, jakobid) clade. The original data set strongly supports an association between the (diplomonad, Carpediemonas, parabasalid) clade and Opisthokonts. However, this grouping is not recovered when α-tubulin is excluded from the analysis, suggesting that the signal for this relationship lies within this one protein and might be suspect. All other important nodes in the tree are, by contrast, robust to the removal of any one gene. With α-tubulin excluded, excavates tend to form just two clades, with no strong nodes separating them. Jakobids, with their apparently ancestral bacterial-type mitrochondrial RNA polymerase are nonetheless nested within a clade with normal phage-type RNA polymerases, complicating any understanding of deep-level mitochondrial evolution The position of jakobids also seriously challenges the now well-accepted concept of a taxon Discicristata.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    The @journal of eukaryotic microbiology 49 (2002), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: . Despite being amongst the more familiar groups of heterotrophic flagellates, the evolutionary affinities of oxymonads remain poorly understood. A re-interpretation of the cytoskeleton of the oxymonad Monocercomonoides hausmanni suggests that this organism has a similar Ultrastructural organisation to members of the informal assemblage ‘excavate taxa’. The preaxostyle, ‘Rl’ root, and ‘R2’ root of M. hausmanni are proposed to be homologous to the right, left, and anterior roots respectively of excavate taxa. The ‘paracrystalline’ portion of the preaxostyle, previously treated as unique to oxymonads, is proposed to be homologous to the I fibre of excavate taxa. Other non-microtubular fibres are identified that have both positional and substructurel similarity to the distinctive B and C fibres of excavate taxa. A homologue to the ‘singlet root’, otherwise distinctive for excavate taxa, is also proposed. The preaxostyle and C fibre homologue in Monocercomonoides are most similar to the homologous structures in Trimastix, suggesting a particularly close relationship. This supports and extends recent molecular phylogenetic findings that Trimastix and oxymonads form a clade. We conclude that oxymonads have an excavate ancestry, and that the‘excavate taxa’ sensu stricto form a paraphyletic assemblage.
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  • 3
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract. This revision of the classification of unicellular eukaryotes updates that of Levine et al. (1980) for the protozoa and expands it to include other protists. Whereas the previous revision was primarily to incorporate the results of ultrastructural studies, this revision incorporates results from both ultrastructural research since 1980 and molecular phylogenetic studies. We propose a scheme that is based on nameless ranked systematics. The vocabulary of the taxonomy is updated, particularly to clarify the naming of groups that have been repositioned. We recognize six clusters of eukaryotes that may represent the basic groupings similar to traditional “kingdoms.” The multicellular lineages emerged from within monophyletic protist lineages: animals and fungi from Opisthokonta, plants from Archaeplastida, and brown algae from Stramenopiles.
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  • 4
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing
    The @journal of eukaryotic microbiology 52 (2005), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract. The small subunit rDNA sequence of Maristentor dinoferus (Lobban, Schefter, Simpson, Pochon, Pawlowski, and Foissner, 2002) was determined and compared with sequences from other Heterotrichea and Karyorelictea. Maristentor resembles Stentor in basic morphology and had been provisionally assigned to Stentoridae. However, our phylogenetic analyses show that Maristentor is more closely related to Folliculinidae. Our results support the creation of a separate family for Maristentor, Maristentoridae n. fam., and also confirm the phylogenetic grouping of Folliculindae, Stentoridae, Blepharismidae, and Maristentoridae, which we informally call ‘stentorids’. Maristentor, rather than Stentor itself, appears to be most significant in understanding the origins of folliculinids from their aloricate ancestors. Our analyses suggest continued uncertainty in the exact placement of the root of heterotrichs with this phylogenetic marker.
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  • 5
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    The @journal of eukaryotic microbiology 51 (2004), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: . The flagellar apparatus of four heterolobosean species Percolomonas descissus, Percolomonas sulcatus, Tetramitus rostratus, and Naegleria gruberi were examined. P. descissus lives in oxygen-poor water. It is a quadriflagellated cell with a ventral groove. The two pairs of basal bodies are connected to an apical structure from which the peripheral dorso-lateral microtubules and a short striated rhizoplast originate. There is one major microtubular root, Rl, which originates from the posterior basal body pair and splits into left and right portions that support the sides of the ventral groove. The anterior pair of basal bodies is associated with a root of four to five microtubules that runs to the left of the groove. This organisation is similar to that previously reported for Psalteriomonas, Lyromonas, and Percolomonas cosmopolitus. Percolomonas sulcatus has two parallel pairs of basal bodies, each of which is associated with a well-developed Rl root. These roots divide to give two distinct left portions and one merged right portion that support the margins of the slit-like ventral groove. Tetramitus rostratus has two pairs of basal bodies, several rhizoplast fibres, and two Rl roots. Each Rl root supports one wall of the ventral groove. Naegleria gruberi may have two pairs of basal bodies, each associated with a microtubular root and one long rhizoplast fibre. From available data, a ‘double bikont’-like organisation of the heterolobosean flagellar apparatus is inferred, where both of the eldest basal bodies have largely ‘mature’ complements of microtubular roots. The cytoskeletal organisation of heteroloboseans is compared to those of (other) excavates. Our structural data and existing molecular phytogenies weaken the case that Percolomonas, Psalteriomonas, and Lyromonas are phylogenetically separable from other heteroloboseans, undermining many of the highest-level taxa proposed for these organisms, including Percolozoa, Striatorhiza, Percolomonada, Percolomonadea, and Lyromonadea.
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    The @journal of eukaryotic microbiology 48 (2001), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: . The cellular organisation of the ‘excavate’ flagellate Jakoba incarcerataBernard, Simpson and Patterson 2000 is described. Cells have one nucleus and dictyosome. The putative mitochondria lack cristae. Two flagella (anterior and posterior) insert anterior to the feeding groove. The posterior flagellum bears a dorsal vane. An ‘anterior’ microtubular root arises against the anterior basal body. Two main microtubular roots, left and right, and a singlet ‘root’ arise around the posterior basal body and support the groove. Non-microtubular fibres termed ‘A’, ‘B’, ‘I’, and ‘composite’ associate with the right root. A multilaminar ‘C’ fibre associates with the left root. The cytoskeleton of J. incarcerata indicates a common ancestry with other excavate taxa (i.e. diplomonads, retortamonads, heteroloboseids, ‘core jakobids’, Malawimonas, Carpediemonas, and Trimastix). Overall, J. incarcerata is most similar to (other) core jakobids, namely Jakoba libera, Reclinomonas, and Histiona. We regard J. incarcerata as a core jakobid and identify the group by the synapomorphy ‘vanes restricted to dorsal side of the posterior flagellum’. The anterior root and position of the B fibre (and presence of dense inclusions in the cartwheels and a conscpicuous singlet root-associated fibre) in J. incarcerata are novel for core jakobids and argue for close relationships with Trimastix and/or Heterolobosea. The C fibre is similar in substructure to the costal fibre of parabasalids and it is possible that the structures are homologous.
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  • 7
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature 419 (2002), S. 270-270 
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] Spliceosomal introns, one of the hallmarks of eukaryotic genomes, were thought to have originated late in evolution and were assumed not to exist in eukaryotes that diverged early — until the discovery of a single intron with an aberrant splice boundary in the primitive 'protozoan' ...
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  • 8
    ISSN: 1573-5192
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract A flagellated predator of the chlorophyte algaDunaliella spp. was examined by light and electron microscopy. Although this predator had previously been identified as a species of the kinetoplastid genusBodo, the present study revealed the flagellate to be indistinguishable fromColpodella pugnax, the type-species for its genus. The flagellate lacks a kinetoplast, a microtubule supported cytopharynx and paraxial rods in the flagella — characters universally found in kinetoplastid flagellates. The cell has mitochondria with vesicular cristae. Multiple membranes surround the cell and are underlain by longitudinal microtubules not originating from the flagellar region. Most notably, the flagellate has micropores and an apical complex including a conoid, sacculate rhoptries and, apparently, a polar ring. This study hs confirmed thatColpodella is the genus with free-living species most closely related to the apicomplexan parasites (i.e. the “Euapicomplexa” andPerkinsus). No unambiguous synapomorphy supports an “apicomplexan parasites” clade: Inclusion ofColpodella is necessary to secure the Apicomplexa as a monophyletic (=holophyletic) taxon. A new family, the Colpodellidae, is erected for this genus. Colpodella turpis, a previously undescribed species that also consumesDunaliella spp., was isolated from the same samples asC. pugnax. A diagnosis for this species is presented together with a brief review of the genus, in which we recognise seven species. The generic namesAlphamonas Aléxéieff,Nephromonas Droop andDingensia Patterson & Zölffel are rendered into synonomy withColpodella.
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  • 9
  • 10
    Publication Date: 2011-11-01
    Print ISSN: 1434-4610
    Electronic ISSN: 1618-0941
    Topics: Biology
    Published by Elsevier
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