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  • 1
    Publication Date: 2012-12-14
    Description: Soybean (Glycine max (L.) Merr.) is an important crop that provides a sustainable source of protein and oil worldwide. Soybean cyst nematode (Heterodera glycines Ichinohe) is a microscopic roundworm that feeds on the roots of soybean and is a major constraint to soybean production. This nematode causes more than US$1 billion in yield losses annually in the United States alone, making it the most economically important pathogen on soybean. Although planting of resistant cultivars forms the core management strategy for this pathogen, nothing is known about the nature of resistance. Moreover, the increase in virulent populations of this parasite on most known resistance sources necessitates the development of novel approaches for control. Here we report the map-based cloning of a gene at the Rhg4 (for resistance to Heterodera glycines 4) locus, a major quantitative trait locus contributing to resistance to this pathogen. Mutation analysis, gene silencing and transgenic complementation confirm that the gene confers resistance. The gene encodes a serine hydroxymethyltransferase, an enzyme that is ubiquitous in nature and structurally conserved across kingdoms. The enzyme is responsible for interconversion of serine and glycine and is essential for cellular one-carbon metabolism. Alleles of Rhg4 conferring resistance or susceptibility differ by two genetic polymorphisms that alter a key regulatory property of the enzyme. Our discovery reveals an unprecedented plant resistance mechanism against a pathogen. The mechanistic knowledge of the resistance gene can be readily exploited to improve nematode resistance of soybean, an increasingly important global crop.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Liu, Shiming -- Kandoth, Pramod K -- Warren, Samantha D -- Yeckel, Greg -- Heinz, Robert -- Alden, John -- Yang, Chunling -- Jamai, Aziz -- El-Mellouki, Tarik -- Juvale, Parijat S -- Hill, John -- Baum, Thomas J -- Cianzio, Silvia -- Whitham, Steven A -- Korkin, Dmitry -- Mitchum, Melissa G -- Meksem, Khalid -- England -- Nature. 2012 Dec 13;492(7428):256-60. doi: 10.1038/nature11651. Epub 2012 Oct 15.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, Illinois 62901, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23235880" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; DNA Mutational Analysis ; Gene Order ; Gene Silencing ; Genetic Complementation Test ; Glycine Hydroxymethyltransferase/genetics/metabolism ; Haplotypes ; *Host-Parasite Interactions ; Models, Molecular ; Molecular Sequence Data ; Nematoda/*physiology ; Plant Proteins/chemistry/*genetics/*metabolism ; Polymorphism, Genetic/genetics ; Protein Structure, Tertiary ; Quantitative Trait Loci/genetics ; Soybeans/enzymology/*genetics/*parasitology
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 70 (1985), S. 349-354 
    ISSN: 1432-2242
    Keywords: Cytoplasm ; Glycine max ; Chloroplast ; Interaction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A conditionally lethal phenotype occurred when a nuclear chlorophyll mutant (y 20-k 2) was present with a cytoplasmic chlorophyll mutant (cyt-Y 2) in soybean (Glycine max [L.] Merr.). Nuclear mutant y 20-k 2, Genetic Type Collection Number T253, has yellow foliage, tan-saddle-pattern seed and is viable. The y 20-k 2 mutant cannot be separated by classical genetic tests into two separate components, y 20 (yellow foliage) and k 2 (tan-saddle-pattern seed). Mutant cyt-Y 2, T275, is inherited cytoplasmically, has yellow foliage, and is viable. The genotype cyt-Y 2 y 20-k 2/ y 20-k 2 is a conditional lethal; the genotype is lethal under field conditions, but plants survive under greenhouse conditions. This interaction is unique to y 20-k 2. This conditionally lethal genotype may be useful in molecular studies on the interaction between nuclear and plastid genomes.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 95 (1997), S. 460-467 
    ISSN: 1432-2242
    Keywords: Key words Glycine max ; RFLP ; Isozyme ; Geographic origin ; Hybrid vigor
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  In soybean [Glycine max (L.) Merr.] heterosis has been reported for seed yield. Molecular markers may be useful to select diverse parents for the expression of heterosis and yield improvement. The objective of this study was to determine if molecular markers could be used to predict yield heterosis in soybean. From each Maturity Group (MG) II and III, 21 genotypes were selected on the basis of high yield (HY), different geographic origin (GO), and isozyme loci (ISO) and for diversity in restriction fragment length polymorphisms (RFLP), and crosses were made within MGs and selection criteria groups to obtain 6 F1 hybrids per group. The 21 parents and the 24 F1 hybrids of each MG were evaluated for yield in replicated tests at two locations in 2 years, and midparent heterosis (MPH) and high-parent heterosis (HPH) estimates were calculated. On the basis of hybrid performance during the first year, 12 parents (3 per selection criteria group) were chosen in each MG to conduct a second RFLP analysis using 129 probes. Genetic distances (GDM) for pairs of the 12 genotypes were calculated with this RFLP information and correlated with MPH and HPH estimates. Significant MPH averages for seed yield were observed in the combined analysis of variance in each of the four selection criteria groups of MG II, and in the HY, ISO, and GO of MG III. Significant HPH averages were observed only in the ISO and GO groups of MG II. The greatest frequency of F1 hybrids with significant MPH was observed in the ISO and GO groups of both MGs. For HPH, the greatest frequency was observed in the ISO group of both MGs. In both MGs, the ISO group had the largest absolute MPH value; the RFLP group had generally the smallest. The observations indicated that the expression of heterosis in seed yield might be associated with diversity in the isozyme loci present in the parents. For the genotypes included in the second RFLP analysis, correlations of GDMs with MPH and HPH values on an entry-mean basis were low and not significant, indicating that heterosis in yield may not be associated with genetic diversity at the molecular level as determined by RFLPs. The results suggest that in soybean, parent selection on the basis of RFLPs and isozyme loci to exploit heterosis in seed yield may not be feasible. There was no association between genetic distance estimated by the RFLP analysis and seed yield heterosis, and in spite of the observed relationship between isozyme loci and heterosis for yield, the practicality of using the isozyme markers to select parents may be limited because of the reduced number of assayable isozyme loci in soybean.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1573-5060
    Keywords: Glycine max ; Glycine soja ; introgression ; isozyme ; soybean
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Two crosses between Glycine max (L.) Merr. and G. soja Sieb. & Zucc. parents were used to study the association between isozyme marker loci and agronomic and seed composition traits in soybean. The parents possessed different alleles at six isozyme loci for Cross 1 (A80-244036 × PI 326581) and at eight isozyme loci for Cross 2 (A81-157007 × PI 342618A). A total of 480 BC2F4:6 lines from the two crosses was evaluated for 13 traits in two environments. Lines were grouped in locus classes from 0 to 5 according to the number of loci homozygous for the G. soja alleles that they possessed. Within each locus class, each isozyme genotype was represented by five random lines. Selection for G. max alleles at the isozyme loci was not effective in recovering the recurrent parent phenotype in either cross. In cross 1, however, BC2F4-derived lines in the 0- or 1- locus class more closely resembled the G. max parent than lines in the 4- or 5- locus classes for most of the agronomic and seed composition traits evaluated. Significant associations were found between particular isozyme genotypes and every trait analyzed. The estimated effect of genes linked to the Pgm1 locus was a delay in maturity of 6.0±3.4 days. In cross 1, the Idh2 locus was associated with a significant effect on linolenic acid content. The percentage of variation accounted for by the models of estimation varied according to the heritability of the trait. The R2 was high (up to 78%) for maturity, lodging, and vining, and low (up to 21%) for seed yield. Most of the variation was associated with the BC2F1 family from which the lines were derived. There was little evidence that digenic epistasis was an important source of variation.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Plant and soil 130 (1991), S. 63-68 
    ISSN: 1573-5036
    Keywords: backcross method ; breeding methods ; calcareous soil ; chlorosis resistance ; field crops ; forages ; fruit crops ; iron deficiency ; nutrient solution ; pedigree selection ; recurrent selection
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Iron-chlorosis deficiency may occur when an iron-inefficient genotype is grown on calcareous soil. One way to correct the problem is to modify the genotype by plant breeding. Cultivars have been released for oat (Avena byzantina C. Koch), sorghum [Sorghum bicolor (L.) Moench], dry bean (Phaseoulus vulgaris L.), and soybean [Glycine max (L.) Merr.]. Progress is being made in peanut (Arachis hypogea L.), forage species such as clovers (Trifolium sp.) and bluestems (Botriochloa sp.), and pepper (Capsicum annuum L.). Screening of rootstocks is done on citrus (Citrus sp.), mango (Manguifera indica L.), and avocado (Persea americana Mill.).
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Molecular breeding 3 (1997), S. 219-229 
    ISSN: 1572-9788
    Keywords: allele variation ; gene mapping ; major gene ; QTL
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The objective of this study was to map genes controlling iron deficiency chlorosis in two intraspecific soybean [Glycine max (L.) Merrill] populations. Chlorosis symptoms were evaluated by visual scores and spectrometric chlorophyll determinations at the V4 stage (third trifoliolate leaf fully developed) in the field in 1993, and at V2 (first trifoliolate leaf fully developed) and V4 stages in 1994. A total of 89 RFLP and 10 SSR markers in the Pride B216 x A15 population, and 82 RFLP, 14 SSR and 1 morphological I (hilum color) markers in the Anoka x A7 population were used to map quantitative trait loci (QTL) affecting iron deficiency chlorosis. QTL with minor effects were detected on six linkage groups of the Pride B216 x A15 population, suggesting a typical polygene mechanism. In contrast, in the Anoka x A7 population, one QTL contributed an average of 72.7% of the visual score variation and 68.8% of the chlorophyll concentration variation and was mapped on linkage group N. Another QTL for visual score variation, and one for chlorophyll concentration variation were detected on linkage groups A1 and I, respectively. Due to the large LOD score and major genetic effect of the QTL on linkage group N, the quantitative data was reclassified into qualitative data fitting a one major gene model according to the means of the QTL genotypic classes. The major gene was mapped in the same interval of linkage group N using both visual scores and chlorophyll concentrations, thus verifying that one major gene is involved in segregation for iron chlorosis deficiency in the Anoka x A7 population. This study supported a previous hypothesis that two separate genetic mechanisms control iron deficiency in soybean.
    Type of Medium: Electronic Resource
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  • 7
    Publication Date: 2007-09-01
    Print ISSN: 1936-5209
    Electronic ISSN: 1940-3496
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by Wiley
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  • 8
  • 9
    Publication Date: 2016-01-11
    Print ISSN: 1936-5209
    Electronic ISSN: 1940-3496
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by Wiley
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  • 10
    Publication Date: 2006-09-01
    Print ISSN: 0011-183X
    Electronic ISSN: 1435-0653
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by Wiley
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