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  • 1
    Publikationsdatum: 2013-12-29
    Beschreibung: The function of genes is often evolutionarily conserved, and comparing the annotation of ortholog genes in different model organisms has proved to be a powerful predictive tool to identify the function of human genes. Here, we describe Manteia, a resource available online at http://manteia.igbmc.fr . Manteia allows the comparison of embryological, expression, molecular and etiological data from human, mouse, chicken and zebrafish simultaneously to identify new functional and structural correlations and gene-disease associations. Manteia is particularly useful for the analysis of gene lists produced by high-throughput techniques such as microarrays or proteomics. Data can be easily analyzed statistically to characterize the function of groups of genes and to correlate the different aspects of their annotation. Sophisticated querying tools provide unlimited ways to merge the information contained in Manteia along with the possibility of introducing custom user-designed biological questions into the system. This allows for example to connect all the animal experimental results and annotations to the human genome, and take advantage of data not available for human to look for candidate genes responsible for genetic disorders. Here, we demonstrate the predictive and analytical power of the system to predict candidate genes responsible for human genetic diseases.
    Print ISSN: 0305-1048
    Digitale ISSN: 1362-4962
    Thema: Biologie
    Publiziert von Oxford University Press
    Standort Signatur Erwartet Verfügbarkeit
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  • 2
    Publikationsdatum: 2008-06-20
    Beschreibung: The vertebrate body axis is subdivided into repeated segments, best exemplified by the vertebrae that derive from embryonic somites. The number of somites is precisely defined for any given species but varies widely from one species to another. To determine the mechanism controlling somite number, we have compared somitogenesis in zebrafish, chicken, mouse and corn snake embryos. Here we present evidence that in all of these species a similar 'clock-and-wavefront' mechanism operates to control somitogenesis; in all of them, somitogenesis is brought to an end through a process in which the presomitic mesoderm, having first increased in size, gradually shrinks until it is exhausted, terminating somite formation. In snake embryos, however, the segmentation clock rate is much faster relative to developmental rate than in other amniotes, leading to a greatly increased number of smaller-sized somites.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gomez, Celine -- Ozbudak, Ertugrul M -- Wunderlich, Joshua -- Baumann, Diana -- Lewis, Julian -- Pourquie, Olivier -- Cancer Research UK/United Kingdom -- Howard Hughes Medical Institute/ -- England -- Nature. 2008 Jul 17;454(7202):335-9. doi: 10.1038/nature07020. Epub 2008 Jun 18.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18563087" target="_blank"〉PubMed〈/a〉
    Schlagwort(e): Animals ; *Body Patterning/genetics ; Chick Embryo/*embryology ; Gene Expression Regulation, Developmental ; Mice/*embryology ; Molecular Sequence Data ; Snakes/*embryology ; Somites/*embryology ; Time Factors ; Zebrafish/*embryology
    Print ISSN: 0028-0836
    Digitale ISSN: 1476-4687
    Thema: Biologie , Chemie und Pharmazie , Medizin , Allgemeine Naturwissenschaft , Physik
    Standort Signatur Erwartet Verfügbarkeit
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  • 3
    Publikationsdatum: 2010-07-09
    Beschreibung: Vertebrate embryos are characterized by an elongated antero-posterior (AP) body axis, which forms by progressive cell deposition from a posterior growth zone in the embryo. Here, we used tissue ablation in the chicken embryo to demonstrate that the caudal presomitic mesoderm (PSM) has a key role in axis elongation. Using time-lapse microscopy, we analysed the movements of fluorescently labelled cells in the PSM during embryo elongation, which revealed a clear posterior-to-anterior gradient of cell motility and directionality in the PSM. We tracked the movement of the PSM extracellular matrix in parallel with the labelled cells and subtracted the extracellular matrix movement from the global motion of cells. After subtraction, cell motility remained graded but lacked directionality, indicating that the posterior cell movements associated with axis elongation in the PSM are not intrinsic but reflect tissue deformation. The gradient of cell motion along the PSM parallels the fibroblast growth factor (FGF)/mitogen-activated protein kinase (MAPK) gradient, which has been implicated in the control of cell motility in this tissue. Both FGF signalling gain- and loss-of-function experiments lead to disruption of the motility gradient and a slowing down of axis elongation. Furthermore, embryos treated with cell movement inhibitors (blebbistatin or RhoK inhibitor), but not cell cycle inhibitors, show a slower axis elongation rate. We propose that the gradient of random cell motility downstream of FGF signalling in the PSM controls posterior elongation in the amniote embryo. Our data indicate that tissue elongation is an emergent property that arises from the collective regulation of graded, random cell motion rather than by the regulation of directionality of individual cellular movements.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118990/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118990/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Benazeraf, Bertrand -- Francois, Paul -- Baker, Ruth E -- Denans, Nicolas -- Little, Charles D -- Pourquie, Olivier -- R01 GM076692/GM/NIGMS NIH HHS/ -- R01 GM076692-06/GM/NIGMS NIH HHS/ -- R01 HD043158-01/HD/NICHD NIH HHS/ -- R02 HD043158/HD/NICHD NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2010 Jul 8;466(7303):248-52. doi: 10.1038/nature09151.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, Kansas City, Missouri 64110, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20613841" target="_blank"〉PubMed〈/a〉
    Schlagwort(e): Animals ; Cell Movement/*physiology ; Cell Proliferation ; Chemotaxis ; Chick Embryo/*cytology/*embryology/metabolism ; Fibroblast Growth Factors/*metabolism ; Neurons/cytology/metabolism ; Receptors, Fibroblast Growth Factor/genetics/metabolism ; Signal Transduction ; Xenopus
    Print ISSN: 0028-0836
    Digitale ISSN: 1476-4687
    Thema: Biologie , Chemie und Pharmazie , Medizin , Allgemeine Naturwissenschaft , Physik
    Standort Signatur Erwartet Verfügbarkeit
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  • 4
    Publikationsdatum: 2010-02-19
    Beschreibung: One of the most notable features of the vertebrate body plan organization is its bilateral symmetry, evident at the level of vertebrae and skeletal muscles. Here we show that a mutation in Rere (also known as atrophin2) leads to the formation of asymmetrical somites in mouse embryos, similar to embryos deprived of retinoic acid. Furthermore, we also demonstrate that Rere controls retinoic acid signalling, which is required to maintain somite symmetry by interacting with Fgf8 in the left-right signalling pathway. Rere forms a complex with Nr2f2, p300 (also known as Ep300) and a retinoic acid receptor, which is recruited to the retinoic acid regulatory element of retinoic acid targets, such as the Rarb promoter. Furthermore, the knockdown of Nr2f2 and/or Rere decreases retinoic acid signalling, suggesting that this complex is required to promote transcriptional activation of retinoic acid targets. The asymmetrical expression of Nr2f2 in the presomitic mesoderm overlaps with the asymmetry of the retinoic acid signalling response, supporting its implication in the control of somitic symmetry. Misregulation of this mechanism could be involved in symmetry defects of the human spine, such as those observed in patients with scoliosis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Vilhais-Neto, Goncalo C -- Maruhashi, Mitsuji -- Smith, Karen T -- Vasseur-Cognet, Mireille -- Peterson, Andrew S -- Workman, Jerry L -- Pourquie, Olivier -- Howard Hughes Medical Institute/ -- England -- Nature. 2010 Feb 18;463(7283):953-7. doi: 10.1038/nature08763.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Stowers Institute for Medical Research, Missouri 64110, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20164929" target="_blank"〉PubMed〈/a〉
    Schlagwort(e): Animals ; Body Patterning/*physiology ; COUP Transcription Factor II/deficiency/genetics/metabolism ; Cell Line ; E1A-Associated p300 Protein/metabolism ; Embryo, Mammalian/embryology/metabolism ; Fibroblast Growth Factor 8/metabolism ; Gene Expression Regulation, Developmental ; Mice ; Mice, Inbred C57BL ; Multiprotein Complexes/chemistry/metabolism ; Nerve Tissue Proteins/deficiency/genetics/*metabolism ; Promoter Regions, Genetic/genetics ; Receptors, Retinoic Acid/genetics/metabolism ; Repressor Proteins/deficiency/genetics/*metabolism ; Response Elements/genetics ; *Signal Transduction ; Somites/*embryology/*metabolism ; Tretinoin/*metabolism
    Print ISSN: 0028-0836
    Digitale ISSN: 1476-4687
    Thema: Biologie , Chemie und Pharmazie , Medizin , Allgemeine Naturwissenschaft , Physik
    Standort Signatur Erwartet Verfügbarkeit
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  • 5
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    Unbekannt
    American Association for the Advancement of Science (AAAS)
    Publikationsdatum: 2014-09-27
    Beschreibung: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pourquie, Olivier -- New York, N.Y. -- Science. 2014 Sep 26;345(6204):1565-6. doi: 10.1126/science.1260025.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Genetics, Harvard Medical School and Department of Pathology, Brigham and Women's Hospital, 77 Avenue Louis Pasteur, Boston, MA 02115, USA. Institut de Genetique et de Biologie Moleculaire et Cellulaire, CNRS (UMR 7104), Inserm U964, Universite de Strasbourg, Illkirch, F-64700, France. pourquie@genetics.med.harvard.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25258067" target="_blank"〉PubMed〈/a〉
    Schlagwort(e): Animals ; *Body Patterning ; *Cell Differentiation ; Neural Tube/*embryology ; Spinal Cord/*embryology ; Stem Cells/*cytology
    Print ISSN: 0036-8075
    Digitale ISSN: 1095-9203
    Thema: Biologie , Chemie und Pharmazie , Informatik , Medizin , Allgemeine Naturwissenschaft , Physik
    Standort Signatur Erwartet Verfügbarkeit
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  • 6
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    Unbekannt
    American Association for the Advancement of Science (AAAS)
    Publikationsdatum: 2003-06-14
    Beschreibung: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Burt, Dave -- Pourquie, Olivier -- New York, N.Y. -- Science. 2003 Jun 13;300(5626):1669.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Roslin Institute (Edinburgh), Midlothian EH25 9PS, UK. dave.burt@bbsrc.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12805524" target="_blank"〉PubMed〈/a〉
    Schlagwort(e): Animals ; Chickens/*genetics ; Chromosomes, Artificial, Bacterial ; Computational Biology ; DNA, Complementary ; Databases, Genetic ; Expressed Sequence Tags ; *Genome ; International Cooperation ; Oligonucleotide Array Sequence Analysis ; Physical Chromosome Mapping ; Polymorphism, Single Nucleotide ; Quantitative Trait Loci ; *Sequence Analysis, DNA
    Print ISSN: 0036-8075
    Digitale ISSN: 1095-9203
    Thema: Biologie , Chemie und Pharmazie , Informatik , Medizin , Allgemeine Naturwissenschaft , Physik
    Standort Signatur Erwartet Verfügbarkeit
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  • 7
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    Unbekannt
    American Association for the Advancement of Science (AAAS)
    Publikationsdatum: 2003-07-19
    Beschreibung: In most animal species, the anteroposterior body axis is generated by the formation of repeated structures called segments. In vertebrate segmentation, a specialized mesodermal structure called the somite gives rise to skeletal muscles, vertebrae, and some dermis. Formation of the somites is a rhythmic process that involves an oscillator--the segmentation clock--driven by Wnt and Notch signaling. The clock ticks in somite precursors and halts when they reach a specific maturation stage defined as the wavefront, established by fibroblast growth factor and Wnt signaling. This process converts the temporal oscillations into the periodic spatial pattern of somite boundaries. The study of somite development provides insights into the spatiotemporal integration of signaling systems in the vertebrate embryo.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pourquie, Olivier -- New York, N.Y. -- Science. 2003 Jul 18;301(5631):328-30.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Stowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110, USA. olp@stowers-institute.org〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12869750" target="_blank"〉PubMed〈/a〉
    Schlagwort(e): Animals ; Biological Clocks/*physiology ; *Body Patterning ; *Embryonic Development ; *Embryonic and Fetal Development ; Fibroblast Growth Factor 8 ; Fibroblast Growth Factors/metabolism ; Membrane Proteins/metabolism ; Periodicity ; Proto-Oncogene Proteins/metabolism ; Receptors, Notch ; Signal Transduction ; Somites/*physiology ; Vertebrates/*embryology/genetics/metabolism ; Wnt Proteins ; *Zebrafish Proteins
    Print ISSN: 0036-8075
    Digitale ISSN: 1095-9203
    Thema: Biologie , Chemie und Pharmazie , Informatik , Medizin , Allgemeine Naturwissenschaft , Physik
    Standort Signatur Erwartet Verfügbarkeit
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  • 8
    Publikationsdatum: 2010-03-06
    Beschreibung: Hox genes are central to the specification of structures along the anterior-posterior body axis, and modifications in their expression have paralleled the emergence of diversity in vertebrate body plans. Here we describe the genomic organization of Hox clusters in different reptiles and show that squamates have accumulated unusually large numbers of transposable elements at these loci, reflecting extensive genomic rearrangements of coding and non-coding regulatory regions. Comparative expression analyses between two species showing different axial skeletons, the corn snake and the whiptail lizard, revealed major alterations in Hox13 and Hox10 expression features during snake somitogenesis, in line with the expansion of both caudal and thoracic regions. Variations in both protein sequences and regulatory modalities of posterior Hox genes suggest how this genetic system has dealt with its intrinsic collinear constraint to accompany the substantial morphological radiation observed in this group.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Di-Poi, Nicolas -- Montoya-Burgos, Juan I -- Miller, Hilary -- Pourquie, Olivier -- Milinkovitch, Michel C -- Duboule, Denis -- Howard Hughes Medical Institute/ -- England -- Nature. 2010 Mar 4;464(7285):99-103. doi: 10.1038/nature08789.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉National Research Center Frontiers in Genetics, Department of Zoology and Animal Biology, University of Geneva, Sciences III, 1211 Geneva 4, Switzerland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20203609" target="_blank"〉PubMed〈/a〉
    Schlagwort(e): Amino Acid Sequence ; Animals ; *Biological Evolution ; Body Patterning/*genetics ; *Colubridae/embryology/genetics ; DNA Transposable Elements/genetics ; Gene Expression Regulation, Developmental ; Genes, Homeobox/*genetics ; Genome/genetics ; Homeodomain Proteins/*genetics/*metabolism ; *Lizards/embryology/genetics ; Molecular Sequence Data ; Multigene Family/genetics ; Somites/embryology/metabolism
    Print ISSN: 0028-0836
    Digitale ISSN: 1476-4687
    Thema: Biologie , Chemie und Pharmazie , Medizin , Allgemeine Naturwissenschaft , Physik
    Standort Signatur Erwartet Verfügbarkeit
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  • 9
    Publikationsdatum: 2014-11-11
    Beschreibung: The move of vertebrates to a terrestrial lifestyle required major adaptations in their locomotory apparatus and reproductive organs. While the fin-to-limb transition has received considerable attention, little is known about the developmental and evolutionary origins of external genitalia. Similarities in gene expression have been interpreted as a potential evolutionary link between the limb and genitals; however, no underlying developmental mechanism has been identified. We re-examined this question using micro-computed tomography, lineage tracing in three amniote clades, and RNA-sequencing-based transcriptional profiling. Here we show that the developmental origin of external genitalia has shifted through evolution, and in some taxa limbs and genitals share a common primordium. In squamates, the genitalia develop directly from the budding hindlimbs, or the remnants thereof, whereas in mice the genital tubercle originates from the ventral and tail bud mesenchyme. The recruitment of different cell populations for genital outgrowth follows a change in the relative position of the cloaca, the genitalia organizing centre. Ectopic grafting of the cloaca demonstrates the conserved ability of different mesenchymal cells to respond to these genitalia-inducing signals. Our results support a limb-like developmental origin of external genitalia as the ancestral condition. Moreover, they suggest that a change in the relative position of the cloacal signalling centre during evolution has led to an altered developmental route for external genitalia in mammals, while preserving parts of the ancestral limb molecular circuitry owing to a common evolutionary origin.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4294627/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4294627/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tschopp, Patrick -- Sherratt, Emma -- Sanger, Thomas J -- Groner, Anna C -- Aspiras, Ariel C -- Hu, Jimmy K -- Pourquie, Olivier -- Gros, Jerome -- Tabin, Clifford J -- R37 HD032443/HD/NICHD NIH HHS/ -- R37-HD032443/HD/NICHD NIH HHS/ -- England -- Nature. 2014 Dec 18;516(7531):391-4. doi: 10.1038/nature13819. Epub 2014 Nov 5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA. ; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA. ; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA. ; 1] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Institut de Genetique et de Biologie Moleculaire et Cellulaire (IGBMC), 67400 Illkirch, France [3] Department of Pathology, Brigham and Women's Hospital, Boston, Massachusetts 02115, USA. ; Developmental and Stem Cell Biology Department, Institut Pasteur, 75724 Paris Cedex 15, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25383527" target="_blank"〉PubMed〈/a〉
    Schlagwort(e): Animals ; *Biological Evolution ; Cell Lineage ; Cloaca/anatomy & histology/*embryology ; Gene Expression Profiling ; Gene Expression Regulation, Developmental ; Genitalia/anatomy & histology/*embryology/metabolism ; Mice ; Phylogeny ; Signal Transduction ; Snakes/embryology ; Tissue Transplantation ; X-Ray Microtomography
    Print ISSN: 0028-0836
    Digitale ISSN: 1476-4687
    Thema: Biologie , Chemie und Pharmazie , Medizin , Allgemeine Naturwissenschaft , Physik
    Standort Signatur Erwartet Verfügbarkeit
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  • 10
    Publikationsdatum: 2006-11-11
    Beschreibung: The segmental pattern of the spine is established early in development, when the vertebral precursors, the somites, are rhythmically produced from the presomitic mesoderm. Microarray studies of the mouse presomitic mesoderm transcriptome reveal that the oscillator associated with this process, the segmentation clock, drives the periodic expression of a large network of cyclic genes involved in cell signaling. Mutually exclusive activation of the notch-fibroblast growth factor and Wnt pathways during each cycle suggests that coordinated regulation of these three pathways underlies the clock oscillator.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dequeant, Mary-Lee -- Glynn, Earl -- Gaudenz, Karin -- Wahl, Matthias -- Chen, Jie -- Mushegian, Arcady -- Pourquie, Olivier -- New York, N.Y. -- Science. 2006 Dec 8;314(5805):1595-8. Epub 2006 Nov 9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, Kansas City, MO 64110, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/17095659" target="_blank"〉PubMed〈/a〉
    Schlagwort(e): Algorithms ; Animals ; *Body Patterning ; Embryonic Development/*genetics ; Fibroblast Growth Factors/metabolism ; Gene Expression Profiling ; *Gene Expression Regulation, Developmental ; Glycosyltransferases/genetics ; Hybrid Cells ; MAP Kinase Signaling System ; Mesoderm/*metabolism ; Mice ; Multigene Family ; Oligonucleotide Array Sequence Analysis ; Receptors, Notch/metabolism ; Signal Transduction/*genetics ; Somites/cytology/*metabolism ; *Transcription, Genetic ; Wnt Proteins/metabolism
    Print ISSN: 0036-8075
    Digitale ISSN: 1095-9203
    Thema: Biologie , Chemie und Pharmazie , Informatik , Medizin , Allgemeine Naturwissenschaft , Physik
    Standort Signatur Erwartet Verfügbarkeit
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