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  • 1
    Publication Date: 2016-11-01
    Electronic ISSN: 1471-2180
    Topics: Biology
    Published by BioMed Central
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  • 2
    Publication Date: 2016-10-12
    Description: The present study was conducted to compare the differences in gut microbiota composition and gut-phenotypes among pig breeds, and determine whether these differences would transmit to mice colonized with fecal...
    Electronic ISSN: 1471-2180
    Topics: Biology
    Published by BioMed Central
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  • 3
    Publication Date: 2013-10-02
    Description: Most current cancer therapies focus on killing malignant cells, but these cells are often genetically unstable and can become resistant to chemotherapy. Tumor-associated macrophages (TAMs) facilitate disease progression by promoting angiogenesis and tumor cell growth, as well as by suppressing the adaptive immune response. TAMs are therefore potential targets for...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 4
    Publication Date: 2019
    Description: Abstract The role of copepod Calanus sinicus on the production of dimethylsulfide (DMS)/dimethylsulfoniopropionate (DMSP) in Jiaozhou Bay was evaluated in field measurements and laboratory experiments. Samples at 10 sites in the bay were collected monthly from June 2010 to May 2011 (except for March 2011), and zooplankton species composition was analyzed. Effects of C. sinicus grazing on DMS/DMSP production at different conditions (i.e., algal diets, food concentrations, and salinities) were assessed in the laboratory. Data from the field experiment showed that C. sinicus was the dominant copepod in Jiaozhou Bay (up to 123 individuals m−3 in May 2011) and preferred to graze on diatom. DMS and DMSP concentrations not only depend on phytoplankton abundance, but also phytoplankton species and bacterial abundance. In the laboratory experiment, compared with Gymnodinium sp. or Emiliania huxleyi, C. sinicus feeding on Isochrysis galbana and Chaetoceros curvisetus exhibited increased DMS concentration, whereas high salinity inhibited DMS production. Copepod ingested 0.5%‐35% of DMSP in filtered phytoplankton, and copepod DMSP ingestion turnover rate in Jiaozhou Bay was up to 29 pmol L−1 d−1. Although the microbial DMSP consumption rate was 10‐2620 fold of copepod turnover rate, copepod grazing was still one of the important routes in DMSP loss processes through food chain. This study indicated that DMSP was transferred from phytoplankton to copepod body, fecal pellet, and seawater through copepod grazing. Our results provided important information to understand the biogeochemical cycle of DMSP in Jiaozhou Bay.
    Print ISSN: 2169-8953
    Electronic ISSN: 2169-8961
    Topics: Biology , Geosciences
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 5
    Publication Date: 2015-08-28
    Description: With the advances of Internet technologies and an explosive growth in the popularity of social media, an increasingly large part of human life is getting digitized and becoming available on the web. This phenomenon brings opportunities and motivates us to infer users’ situations by exploiting their interaction events in various social media such as online social networks, blogs and email. One of the key requirements of inferring situations from interaction events is to consider both the semantic and temporal aspects of events in the situation inference process. In this paper, we address this issue and propose a novel approach to exploiting users’ interaction events in social media to infer their situations. We present an ontology-based interaction event model that captures the properties of users’ interaction activities in social media. We further provide a rule-based situation specification technique that integrates the interaction event ontology (for semantically matching interaction events) with temporal event relationships (for correlating historical interaction events). We also provide a platform to realize the situation reasoning/inference process, which combines semantic matching and complex event processing. We conduct a performance evaluation of the platform to quantify its efficacy. The feasibility and applicability of our approach is demonstrated by developing a socially aware phone call application as a case study.
    Print ISSN: 0010-4620
    Electronic ISSN: 1460-2067
    Topics: Computer Science
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  • 6
    Publication Date: 2016-06-17
    Description: During enhancement of solar wind dynamic pressure, we observe the periodic emissions of electromagnetic ion cyclotron (EMIC) waves near the nightside geosynchronous orbit (6.6R E ). In the hydrogen and helium bands, the different polarized EMIC waves have different influences on relativistic electrons (〉0.8 MeV). The flux of relativistic electrons is relatively stable if there are only the linearly polarized EMIC waves, but their flux decreases if the left-hand polarized (L-mode) EMIC waves are sufficiently amplified (power spectral density (PSD) ≥ 1 nT 2 /Hz). The larger-amplitude L-mode waves can cause more electron losses. In contrast, the R-mode EMIC waves are very weak (PSD 
    Print ISSN: 1070-664X
    Electronic ISSN: 1089-7674
    Topics: Physics
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  • 7
    Publication Date: 2015-04-21
    Description: DNA base composition is a fundamental genome feature. However, the evolutionary pattern of base composition and its potential causes have not been well understood. Here, we report findings from comparative analysis of base composition at the whole-genome level across 2210 species, the polymorphic-site level across eight population comparison sets, and the mutation-site level in 12 mutation-tracking experiments. We first demonstrate that base composition follows the individual-strand base equality rule at the genome, chromosome and polymorphic-site levels. More intriguingly, clear separation of base-composition values calculated across polymorphic sites was consistently observed between basal and derived groups, suggesting common underlying mechanisms. Individuals in the derived groups show an A&T-increase/G&C-decrease pattern compared with the basal groups. Spontaneous and induced mutation experiments indicated these patterns of base composition change can emerge across mutation sites. With base-composition across polymorphic sites as a genome phenotype, genome scans with human 1000 Genomes and HapMap3 data identified a set of significant genomic regions enriched with Gene Ontology terms for DNA repair. For three DNA repair genes ( BRIP1, PMS2P3 and TTDN ), ENCODE data provided evidence for interaction between genomic regions containing these genes and regions containing the significant SNPs. Our findings provide insights into the mechanisms of genome evolution.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 8
    Publication Date: 2012-08-29
    Description: Receptor tyrosine kinases (RTKs) control a host of biological functions by phosphorylating tyrosine residues of intracellular proteins upon extracellular ligand binding. The phosphotyrosines (p-Tyr) then recruit a subset of ∼100 Src homology 2 (SH2) domain-containing proteins to the cell membrane. The in vivo kinetics of this process are not well...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 9
    Publication Date: 2012-07-11
    Description: The NLRP3 (nucleotide-binding domain, leucine-rich-repeat-containing family, pyrin domain-containing 3) inflammasome mediates production of inflammatory mediators, such as IL-1β and IL-18, and as such is implicated in a variety of inflammatory processes, including infection, sepsis, autoinflammatory diseases, and metabolic diseases. The proximal steps in NLRP3 inflammasome activation are not well understood. Here we elucidate a critical role for Ca2+ mobilization in activation of the NLRP3 inflammasome by multiple stimuli. We demonstrate that blocking Ca2+ mobilization inhibits assembly and activation of the NLRP3 inflammasome complex, and that during ATP stimulation Ca2+ signaling is pivotal in promoting mitochondrial damage. C/EPB homologous protein, a transcription factor that can modulate Ca2+ release from the endoplasmic reticulum, amplifies NLRP3 inflammasome activation, thus linking endoplasmic reticulum stress to activation of the NLRP3 inflammasome. Our findings support a model for NLRP3 inflammasome activation by Ca2+-mediated mitochondrial damage.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 10
    Publication Date: 2011-07-27
    Description: Tuberous sclerosis complex (TSC) is a tumor suppressor syndrome characterized by benign tumors in multiple organs, including the brain and kidney. TSC-associated tumors exhibit hyperactivation of mammalian target of rapamycin complex 1 (mTORC1), a direct inhibitor of autophagy. Autophagy can either promote or inhibit tumorigenesis, depending on the cellular context. The role of autophagy in the pathogenesis and treatment of the multisystem manifestations of TSC is unknown. We found that the combination of mTORC1 and autophagy inhibition was more effective than either treatment alone in inhibiting the survival of tuberin (TSC2)-null cells, growth of TSC2-null xenograft tumors, and development of spontaneous renal tumors in Tsc2+/− mice. Down-regulation of Atg5 induced extensive central necrosis in TSC2-null xenograft tumors, and loss of one allele of Beclin1 almost completely blocked macroscopic renal tumor formation in Tsc2+/− mice. Surprisingly, given the finding that lowering autophagy blocks TSC tumorigenesis, genetic down-regulation of p62/sequestosome 1 (SQSTM1), the autophagy substrate that accumulates in TSC tumors as a consequence of low autophagy levels, strongly inhibited the growth of TSC2-null xenograft tumors. These data demonstrate that autophagy is a critical component of TSC tumorigenesis, suggest that mTORC1 inhibitors may have autophagy-dependent prosurvival effects in TSC, and reveal two distinct therapeutic targets for TSC: autophagy and the autophagy target p62/SQSTM1.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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