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  • 1
    Publication Date: 2012-07-11
    Description: The primary hormone-binding surface of the insulin receptor spans one face of the N-terminal β-helix of the α-subunit (the L1 domain) and an α-helix in its C-terminal segment (αCT). Crystallographic analysis of the free ectodomain has defined a contiguous dimer-related motif in which the αCT α-helix packs against L1 β-strands 2 and 3. To relate structure to function, we exploited expanded genetic-code technology to insert photo-activatable probes at key sites in L1 and αCT. The pattern of αCT-mediated photo–cross-linking within the free and bound receptor is in accord with the crystal structure and prior mutagenesis. Surprisingly, L1 photo-probes in β-strands 2 and 3, predicted to be shielded by αCT, efficiently cross-link to insulin. Furthermore, anomalous mutations were identified on neighboring surfaces of αCT and insulin that impair hormone-dependent activation of the intracellular receptor tyrosine kinase (contained within the transmembrane β-subunit) disproportionately to their effects on insulin binding. Taken together, these results suggest that αCT, in addition to its hormone-recognition role, provides a signaling element in the mechanism of receptor activation.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 2
    Publication Date: 2014-08-20
    Description: Insulin provides a classical model of a globular protein, yet how the hormone changes conformation to engage its receptor has long been enigmatic. Interest has focused on the C-terminal B-chain segment, critical for protective self-assembly in β cells and receptor binding at target tissues. Insight may be obtained from truncated...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 3
    Publication Date: 2017-11-08
    Description: Fossiliferous deposits infilling a channel at Whittlesey, eastern England, are dated by amino acid racemization to the Last Interglacial, and pollen analysis indicates deposition in Ipswichian biozones Ip Ib and Ip IIb. Multidisciplinary palaeoenvironmental analyses of these deposits provide a rare insight into Ip Ib subzone conditions. Specifically, the Ip Ib deposits contain exotic thermophiles Naias minor , Belgrandia marginata , Bembidion elongatum , Pelochares versicolor , Caccobius schreberi, Onthophagus massai and Emys orbicularis , usually associated with Ip IIb. Combined palaeotemperature reconstructions based on beetle, ostracod and vertebrate assemblages of the Ip Ib deposits indicate that summers (mean July range +19 to +22°C) were at least 2°C warmer than at present, whereas winters (mean January air temperature range 0 to +7°C) were probably similar to those of today. These palaeotemperature ranges encompass those for Ip IIb deposits at Trafalgar Square (+20 to +21°C and +1.5 to +3°C), previously considered the only Ipswichian site to record temperatures significantly warmer than Holocene temperatures. Of particular significance is that thermal optimal conditions commenced in Ip Ib, rather than being confined to Ip IIb. This demonstrates rapid warming and biological response to early Ipswichian climate amelioration, which accords with the deep-sea Last Interglacial and European Eemian records. Supplementary material: Supplementary Tables S1-S7 are available at http://doi.org/10.6084/m9.figshare.c.3830221 .
    Print ISSN: 0016-7649
    Topics: Geosciences
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  • 4
    Publication Date: 2013-01-11
    Description: Insulin receptor signalling has a central role in mammalian biology, regulating cellular metabolism, growth, division, differentiation and survival. Insulin resistance contributes to the pathogenesis of type 2 diabetes mellitus and the onset of Alzheimer's disease; aberrant signalling occurs in diverse cancers, exacerbated by cross-talk with the homologous type 1 insulin-like growth factor receptor (IGF1R). Despite more than three decades of investigation, the three-dimensional structure of the insulin-insulin receptor complex has proved elusive, confounded by the complexity of producing the receptor protein. Here we present the first view, to our knowledge, of the interaction of insulin with its primary binding site on the insulin receptor, on the basis of four crystal structures of insulin bound to truncated insulin receptor constructs. The direct interaction of insulin with the first leucine-rich-repeat domain (L1) of insulin receptor is seen to be sparse, the hormone instead engaging the insulin receptor carboxy-terminal alpha-chain (alphaCT) segment, which is itself remodelled on the face of L1 upon insulin binding. Contact between insulin and L1 is restricted to insulin B-chain residues. The alphaCT segment displaces the B-chain C-terminal beta-strand away from the hormone core, revealing the mechanism of a long-proposed conformational switch in insulin upon receptor engagement. This mode of hormone-receptor recognition is novel within the broader family of receptor tyrosine kinases. We support these findings by photo-crosslinking data that place the suggested interactions into the context of the holoreceptor and by isothermal titration calorimetry data that dissect the hormone-insulin receptor interface. Together, our findings provide an explanation for a wealth of biochemical data from the insulin receptor and IGF1R systems relevant to the design of therapeutic insulin analogues.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3793637/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3793637/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Menting, John G -- Whittaker, Jonathan -- Margetts, Mai B -- Whittaker, Linda J -- Kong, Geoffrey K-W -- Smith, Brian J -- Watson, Christopher J -- Zakova, Lenka -- Kletvikova, Emilia -- Jiracek, Jiri -- Chan, Shu Jin -- Steiner, Donald F -- Dodson, Guy G -- Brzozowski, Andrzej M -- Weiss, Michael A -- Ward, Colin W -- Lawrence, Michael C -- DK13914/DK/NIDDK NIH HHS/ -- DK20595/DK/NIDDK NIH HHS/ -- DK40949/DK/NIDDK NIH HHS/ -- R01 DK040949/DK/NIDDK NIH HHS/ -- UL1 TR000439/TR/NCATS NIH HHS/ -- Biotechnology and Biological Sciences Research Council/United Kingdom -- England -- Nature. 2013 Jan 10;493(7431):241-5. doi: 10.1038/nature11781.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, Victoria 3052, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23302862" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Binding Sites ; Calorimetry ; Cattle ; Cell Line ; Crystallography, X-Ray ; Humans ; Insulin/*chemistry/*metabolism ; Leucine/metabolism ; Ligands ; Models, Molecular ; Protein Binding ; Protein Structure, Secondary ; Receptor, Insulin/*chemistry/*metabolism ; Reproducibility of Results
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2016-01-01
    Description: :  Stratigraphic architectures are fundamentally controlled by the interplay at different temporal and spatial scales of accommodation and sediment supply, modulated by autogenic responses of the sediment routing system and its constituent segments. The flux and caliber of sediment supply is a function of climate, catchment area, and tectonics in the source regions, and unraveling these forcing mechanisms from the observed stratigraphic architecture remains a key research challenge. The mid-to-late Eocene Escanilla sediment routing system had its source regions in the south-central Pyrenean orogen, northern Spain, and transported sediment from wedge-top basins along tectonic strike to marine depocenters. By constructing a volumetric budget of the sedimentary system, it has been demonstrated that there were marked changes in the grain-size distribution released from the sediment sources and also in the position of the gravel front, across three ~ 2.6 Myr time intervals from 41.6 to 33.9 Ma. Classical sequence stratigraphic interpretations would relate the movement of depositional boundaries such as the gravel front to changes of base level, either in isolation or in combination with sediment supply. Herein, we explore the possibility that the position of the gravel front was primarily driven by variability of grain-size distributions released from the source regions as a result of changes in catchment uplift rate and/or surface run-off. Using a simple model of sediment transport that captures first-order processes, we simulate the lateral movement of gravel deposition in the proximal part of the Escanilla sediment-routing system. Movement of the gravel front is a function of both accommodation generation and the transport capacity of the sediment routing system. We assume that the transport capacity is a linear function of the local slope and the water flux. By assuming that the observed thickness of deposits is equivalent to the accommodation available during deposition, we then use the stratigraphic architecture to constrain the change in catchment size and water flux over the three time intervals of the Escanilla paleo–sediment-routing system. Multiple scenarios are investigated in order to find the most plausible tectonic and climatic history. Model results indicate that during the mid-Eocene there was an increase in catchment length and sediment flux, most likely driven by tectonic uplift in the Pyrenean orogen. Subsequent marked progradation of the gravel front during the late Eocene was the consequence of reduced transport capacity due to a reduction in surface run-off. The latter model result is in agreement with records of pollen taxa that indicate increased climatic aridity in the late Eocene. The combination of a sediment transport model with a full sediment budget makes it possible to test the non-uniqueness of these results.
    Print ISSN: 1527-1404
    Topics: Geosciences
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  • 6
    Publication Date: 2016-09-13
    Description: ABSTRACT The Gediz (Alaşehir) Graben is located in the highly tectonically active and seismogenic region of Western Turkey. The rivers upstream of the normal fault-bounded graben each contain a non-lithologic knickpoint, including those that drain through inferred fault segment boundaries. Knickpoint heights measured vertically from the fault scale with footwall relief and documented fault throw (vertical displacement). Consequently, we deduce these knickpoints were initiated by an increase in slip rate on the basin-bounding fault, driven by linkage of the three main fault segments of the high-angle graben bounding fault array. Fault interaction theory and ratios of channel steepness suggest that the slip rate enhancement factor on linkage was a factor of 3. We combine this information with geomorphic and structural constraints to estimate that linkage took place between 0.6 Ma and 1 Ma. Calculated pre- and post- linkage throw rates are 0.6 and 2 mm/yr respectively. Maximum knickpoint retreat rates upstream of the faults range from 4.5 to 28 mm/yr, faster than for similar catchments upstream of normal faults in the Central Apennines and the Hatay Graben of Turkey, and implying a fluvial landscape response time of 1.6 to 2.7 Myr. We explore the relative controls of drainage area and precipitation on these retreat rates, and conclude that while climate variation and fault throw rate partially explain the variations seen, lithology remains a potentially important but poorly characterised variable. This article is protected by copyright. All rights reserved.
    Print ISSN: 0197-9337
    Electronic ISSN: 1096-9837
    Topics: Geography , Geosciences
    Published by Wiley
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  • 7
    Publication Date: 2012-07-06
    Description: Promoter methylation of argininosuccinate synthetase-1 sensitises lymphomas to arginine deiminase treatment, autophagy and caspase-dependent apoptosis Cell Death and Disease 3, e342 (July 2012). doi:10.1038/cddis.2012.83 Authors: B Delage, P Luong, L Maharaj, C O’Riain, N Syed, T Crook, E Hatzimichael, A Papoudou-Bai, T J Mitchell, S J Whittaker, R Cerio, J Gribben, N Lemoine, J Bomalaski, C-F Li, S Joel, J Fitzgibbon, L-T Chen & P W Szlosarek
    Keywords: lymphomaASS1 promoter methylationarginineADI-PEG20autophagychloroquine
    Electronic ISSN: 2041-4889
    Topics: Biology , Medicine
    Published by Springer Nature
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  • 8
    Publication Date: 2014-09-17
    Description: Whole-chromosome copy number alterations, also known as aneuploidy, are associated with adverse consequences in most cells and organisms. However, high frequencies of aneuploidy have been reported to occur naturally in the mammalian liver and brain, fueling speculation that aneuploidy provides a selective advantage in these organs. To explore this paradox,...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 9
    Publication Date: 2014-09-24
    Description: Author(s): Anita Zeidler, Kamil Wezka, Ruth F. Rowlands, Dean A. J. Whittaker, Philip S. Salmon, Annalisa Polidori, James W. E. Drewitt, Stefan Klotz, Henry E. Fischer, Martin C. Wilding, Craig L. Bull, Matthew G. Tucker, and Mark Wilson A combination of in situ high-pressure neutron diffraction at pressures up to 17.5(5) GPa and molecular dynamics simulations employing a many-body interatomic potential model is used to investigate the structure of cold-compressed silica glass. The simulations give a good account of the neutron diff... [Phys. Rev. Lett. 113, 135501] Published Tue Sep 23, 2014
    Keywords: Condensed Matter: Structure, etc.
    Print ISSN: 0031-9007
    Electronic ISSN: 1079-7114
    Topics: Physics
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  • 10
    Publication Date: 2019
    Description: Journal of Biogeography, EarlyView.
    Print ISSN: 0305-0270
    Electronic ISSN: 1365-2699
    Topics: Biology , Geography
    Published by Wiley
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