ALBERT

Description: The serial test dissection and sieve fraction methods for determining the pattern of size-related change in oxygen and carbon isotopic ratios are compared using four Late Cretaceous planktic foraminifer species (Racemiguembelina fructicosa, Planoglobulina acervulinoides, Planoglobulina multicamerata, and Pseudoguembelina palpebra) from a subtropical site in the North Atlantic (DSDP Hole 390A). Despite the extra labor required, we identify several clear advantages of the dissection method, including: (1) it provides a means of obtaining size-dependent changes in isotopic signatures that are unequivocally ontogenetic, whereas isotopic variation observed from sieve-separated size fractions could be ontogenetic or ecotypic; (2) the taxonomic identity of smaller sized specimens using the dissection method is unequivocal, whereas species identification is increasingly ambiguous in smaller size fractions using the sieve method; (3) it reveals a greater total range and a greater complexity in the pattern of ontogenetic change in stable isotopic values, whereas the sieve method averages the isotopic signal across the entire ontogenetic range preserved within the whole tests that are used. Our results from serial dissections demonstrate that among the species analyzed, R. fructicosa and P. acervulinoides yield relatively negative adult delta18O values, a large size-related change in delta13C values (1.32 and 2.05‰, respectively), and virtually no correlation between size-related delta13C and delta18O values. On this basis we suggest that these were photosymbiotic species that inhabited relatively shallow surface waters. Evidence for photosymbiosis is not as compelling for P. palpebra, as this species yields a 1.06‰ shift in delta13C and relatively negative delta18O values in adult chambers, but much stronger correlation between size-related delta13C and delta18O values (r square = 0.4) than in R. fructicosa and P. acervulinoides. Planoglobulina multicamerata yields the most positive adult delta18O values of the species studied, a strong covariance between size-related delta13C and delta18O values (r square = 0.77), and a 0.97‰ shift in d13C composition during ontogeny. We conclude that this species lacked photosymbionts and migrated to a deeper surface water paleohabitat as it increased in size. Single specimen analyses of tightly constrained size fractions reveal a high degree of intraspecific variation. Delta13C and delta18O values vary by up to 0.70 and 0.28‰ in R. fructicosa, 1.41 and 0.80‰ in P. acervulinoides, 0.66 and 0.82‰ in P. palpebra, and 0.18 and 0.33‰ in P. multicamerata, respectively. Such a range of isotopic variation has been observed in modern day planktic foraminifer assemblages, and likely results from growth of individuals during different phases of the seasonal cycle and/or the kinetic effect of intraspecific variation in shell calcification rates. As suggested by other investigators, large sample sizes should be analyzed to provide the most reliable correlation of stable isotopic stratigraphic records.

Description: Stable isotope analyses were performed on ontogenetic dissections of four taxa of low latitude Late Cretaceous planktonic foraminifera from DSDP Hole 390A. The species studied include Planoglobulina acervulinoides, Planoglobulina multicamerata, Pseudoguembelina palpebra, and Racemiguembelina fructicosa. Delta18O and delta13C data indicate a deeper surface water paleohabitat for P. multicamerata than the other three taxa, and ontogenetic increases in delta18O values suggest all these taxa underwent vertical migrations from shallow to deeper surface waters. Changes in delta13C values through ontogeny include sharp increases in delta13C composition in the juvenile size intervals, a decrease in the rate of delta13C change through intermediate size intervals, and reversals to a negative trend in delta13C values in terminal size intervals. The intermediate and terminal growth changes in delta13C signals are similar to ontogenetic trends observed in some extant and Paleogene planktonic foraminifera and may result from decreasing metabolic rates through ontogeny or endosymbiont digestion prior to gametogenesis. The ontogenetic delta13C increases of 1.04‰, 0.76‰, 0.83‰, and 0.77‰ in R. fructicosa, P. palpebra, P. acervulinoides, and P. multicamerata, respectively, may indicate the presence of photosymbionts. However, our review and critique of the current literature discussing photosymbiont effects on stable isotope values in living and fossil planktonic foraminifera suggests that conclusions regarding the presence of photosymbionts in fossil taxa may be more equivocal than previously thought.

Description: The translation of messenger RNA (mRNA) into protein is a multistep process by which genetic information transcribed into an mRNA is decoded to produce a specific polypeptide chain of amino acids. Ribosomes play a central role in translation by coordinately working with various translation regulatory factors and aminoacyl-transfer RNAs. Various stresses attenuate the ribosomal synthesis in the nucleolus as well as the translation rate in the cytosol. To efficiently reallocate cellular energy and resources, mammalian cells are endowed with mechanisms that directly link the suppression of translation-related processes to the activation of stress adaptation programmes. This review focuses on the integrated stress response (ISR) and the nucleolar stress response (NSR) both of which are activated by various stressors and selectively upregulate stress-responsive transcription factors. Emerging findings have delineated the detailed molecular mechanisms of the ISR and NSR and expanded their physiological and pathological significances.

Description: The metabolite acetyl-coenzyme A (acetyl-CoA) serves as an essential element for a wide range of cellular functions including adenosine triphosphate (ATP) production, lipid synthesis, and protein acetylation. Intracellular acetyl-CoA concentrations are associated with nutrient availability, but the mechanisms by which a cell responds to fluctuations in acetyl-CoA levels remain elusive. Here, we generate a cell system to selectively manipulate the nucleo-cytoplasmic levels of acetyl-CoA using clustered regularly interspaced short palindromic repeat (CRISPR)-mediated gene editing and acetate supplementation of the culture media. Using this system and quantitative omics analyses, we demonstrate that acetyl-CoA depletion alters the integrity of the nucleolus, impairing ribosomal RNA synthesis and evoking the ribosomal protein-dependent activation of p53. This nucleolar remodeling appears to be mediated through the class IIa histone deacetylases (HDACs). Our findings highlight acetylation-mediated control of the nucleolus as an important hub linking acetyl-CoA fluctuations to cellular stress responses.