ALBERT

Description: Although millions of RNA editing events have been reported to modify hereditary information across the primate transcriptome, evidence for their functional significance remains largely elusive, particularly for the vast majority of editing sites in noncoding regions. Here, we report a new mechanism for the functionality of RNA editing—a crosstalk with PIWI-interacting RNA (piRNA) biogenesis. Exploiting rhesus macaque as an emerging model organism closely related to human, in combination with extensive genome and transcriptome sequencing in seven tissues of the same animal, we deciphered accurate RNA editome across both long transcripts and the piRNA species. Superimposing and comparing these two distinct RNA editome profiles revealed 4,170 editing-bearing piRNA variants, or epiRNAs, that primarily derived from edited long transcripts. These epiRNAs represent distinct entities that evidence an intersection between RNA editing regulations and piRNA biogenesis. Population genetics analyses in a macaque population of 31 independent animals further demonstrated that the epiRNA-associated RNA editing is maintained by purifying selection, lending support to the functional significance of this crosstalk in rhesus macaque. Correspondingly, these findings are consistent in human, supporting the conservation of this mechanism during the primate evolution. Overall, our study reports the earliest lines of evidence for a crosstalk between selectively constrained RNA editing regulation and piRNA biogenesis, and further illustrates that such an interaction may contribute substantially to the diversification of the piRNA repertoire in primates.

Description: Structural coloration underpins communication strategies in many extant insects but its evolution is poorly understood. This stems, in part, from limited data on how color alters during fossilization. We resolve this by using elevated pressures and temperatures to simulate the effects of burial on structurally colored cuticles of modern beetles. Our experiments show that the color generated by multilayer reflectors changes due to alteration of the refractive index and periodicity of the cuticle layers. Three-dimensional photonic crystals are equally resistant to degradation and thus their absence in fossil insects is not a function of limited preservation potential but implies that these color-producing nanostructures evolved recently. Structural colors alter directly to black above a threshold temperature in experiments, identifying burial temperature as the primary control on their preservation in fossils. Color-producing nanostructures can, however, survive in experimentally treated and fossil cuticles that now are black. An extensive cryptic record is thus available in fossil insects to illuminate the evolution of structural color.

Description: Brilliant animal colors often are produced from light interacting with intricate nano-morphologies present in biological materials such as butterfly wing scales. Surveys across widely divergent butterfly species have identified multiple mechanisms of structural color production; however, little is known about how these colors evolved. Here, we examine how closely related...

Description: Small differences in the sensitivity of stomatal conductance to light intensity on leaf surfaces may lead to large differences in total canopy transpiration ( E C ) with increasing canopy leaf area ( L ). Typically, the increase of L would more than compensate for the decrease of transpiration per unit of leaf area ( E L ), resulting in concurrent increase of E C . However, highly shade-intolerant species, such as Larix principis-rupprechtii Mayr., may be so sensitive to increased shading that such compensation is not complete. We hypothesized that in such a stand, windfall-induced spatial variation at a decameter scale would result in greatly reduced E L in patches of high L leading to lower E C than low competition patches of sparse canopy. We further hypothesized that quicker extraction of soil moisture in patches of lower competition will result in earlier onset of drought symptoms in these patches. Thus, patches of low L will transition from light to soil moisture as the factor dominating E L . This process should progressively homogenize E C in the stand even as the variation of soil moisture is increasing. We tested the hypotheses utilizing sap flux of nine trees, and associated environmental and stand variables. The results were consistent with only some of the expectations. Under non-limiting soil moisture, E L was very sensitive to the spatial variation of L , decreasing sharply with increasing L and associated decrease of mean light intensity on leaf surfaces. Thus, under the conditions of ample soil moisture maximum E C decreased with increasing patch-scale L . Annual E C and biomass production also decreased with L , albeit more weakly. Furthermore, variation of E C among patches decreased as average stand soil moisture declined between rain events. However, contrary to expectation, high L plots which transpired less showed a greater E L sensitivity to decreasing stand-scale soil moisture, suggesting a different mechanism than simple control by decreasing soil moisture. We offer potential explanations to the observed phenomenon. Our results demonstrate that spatial variation of L at decameter scale, even within relatively homogeneous, single-species, even-aged stands, can produce large variation of transpiration, soil moisture and biomass production and should be considered in 1-D soil–plant–atmosphere models.

Description: Author(s): J. Yang, Z. T. Tang, G. H. Cao, and Guo-qing Zheng We report As 75 nuclear magnetic resonance (NMR) and nuclear quadrupole resonance (NQR) studies on the superconductor Rb 2 Cr 3 As 3 with a quasi-one-dimensional crystal structure. Below T ∼ 100     K , the spin-lattice relaxation rate ( 1 / T 1 ) divided by temperature, 1 / T 1 T , increases upon cooling down to T c = 4.8   … [Phys. Rev. Lett. 115, 147002] Published Tue Sep 29, 2015

Description: Author(s): H. Cao et al. (SCENE Collaboration) We have measured the scintillation and ionization yield of recoiling nuclei in liquid argon as a function of applied electric field by exposing a dual-phase liquid argon time projection chamber (LAr-TPC) to a low energy pulsed narrow band neutron beam produced at the Notre Dame Institute for Structu... [Phys. Rev. D 91, 092007] Published Tue May 26, 2015

Description: Betatron radiation in strongly magnetized plasma is investigated by two dimensional (2D) particle-in-cell (PIC) simulations. The results show that the betatron radiation in magnetized plasmas is strongly enhanced and is more collimated compared to that in unmagnetized plasma. Single particle model analysis shows that the frequency and the amplitude of the electrons's betatron oscillation are strongly influenced by the axial external magnetic field and the axial self-generated magnetic field. And the 2D PIC simulation shows that the axial magnetic field is actually induced by the external magnetic field and tends to increase the betatron frequency. By disturbing the perturbation of the plasma density in the laser-produced channel, the hosing instability is also suppressed, which results in a better angular distribution and a better symmetry of the betatron radiation.

Description: The vortex phase transition in BaFe 1.8 Co 0.2 As 2 single crystals was studied systematically via measuring the current–voltage ( I-V ) characteristics by rotating the crystals in magnetic fields from H  //  c to H  //  ab . The angle-resolved I-V curves clearly show a three-dimensional vortex glass (VG) scaling collapse. The angular dependent VG transition field H g and critical current density J c can be approximately described by the anisotropic Ginzburg-Landau model, and no peaks representing c -axis correlated pinning were recorded for H  //  c , which reveals that the vortex pinning is mainly caused by randomly distributed uncorrelated-defects. While in the vicinity of H  //  ab , J c deviates from the model due to the in-plane intrinsic pinning. Based on the above results, the angle-resolved vortex phase diagram is constructed, indicating the anisotropic superconducting properties of the system.

Description: Multiple organic functionalities can now be apportioned into nanoscale domains within a metal-coordinated framework, posing the following question: how do we control the resulting combination of “heterogeneity and order”? Here, we report the creation of a metal–organic framework, MOF-2000, whose two component types are incorporated in a 2:1 ratio, even...

Description: We report on plasmon-enhanced random lasing in bio-compatible light emitting Hydroxypropyl Cellulose (HPC) nanofiber networks doped with gold nanoparticles. HPC nanofibers with a diameter of 260 ± 30 nm were synthesized by a one step, cost-effective and facile electrospinning technique from a solution-containing Rhodamine 6G and Au nanoparticles. Nanoparticles of controlled diameters from 10 nm to 80 nm were dispersed inside the nanofibers and optically characterized using photoluminescence, dark-field spectroscopy, and coherent backscattering measurements. Plasmon-enhanced random lasing was demonstrated with a lower threshold than that in dye-doped identical HPC networks without Au nanoparticles. These findings provide an effective approach for plasmon-enhanced random lasers based on a bio-compatible host matrix that is particularly attractive for biophotonic applications such as fluorescence sensing, optical tagging, and detection.