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  • 1
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 96 (1992), S. 387-398 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Nonadiabatic spin transitions can significantly reduce rates in reactions involving transition metals. Zero field spin splittings can further modulate the reaction rate at temperatures with thermal energies of the same size as the zero field splittings, and the low temperature reaction rate can be completely shut off in ligand fields of relatively low symmetry, C2v or D2, for example, due to a vanishing of the electronic matrix element between the initial and final ground spin states. We show in this paper that if the site symmetry is lowered even further, the electronic matrix element coupling the ground spin states can become nonzero, allowing the reaction to occur as the temperature approaches zero. We show what factors in the metal's ligand environment are important for the electronic coupling between the initial and final electronic states. This is especially relevant for transition metals in sites of low symmetry, such as are found in biomolecules. We focus specifically on heme proteins and show how factors in the immediate environment of the Fe, such as the proximal histidine, may lower the site symmetry sufficiently to allow a nonzero low temperature nonadiabatic electronic spin transition that may be necessary for ligand binding. We also use these ideas to make predictions that could resolve the question of whether the reversible binding of CO to heme proteins is a nonadiabatic electronic process.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    [S.l.] : American Institute of Physics (AIP)
    Journal of Applied Physics 88 (2000), S. 2352-2362 
    ISSN: 1089-7550
    Source: AIP Digital Archive
    Topics: Physics
    Notes: Theoretical analysis and extensive numerical simulations are performed on the system of a spherical absorber illuminated by a pulsed laser. Both bubble formation and shock wave generation are investigated. We find that a strong shock front forms just outside the absorber and attenuates quickly into an acoustic wave as it propagates away from the absorber. The formation and growth of the bubble is shown to have a gentle threshold dependence and to be a continuous function of the energy of the laser pulse with no explosive threshold. There is a weak dependence of the threshold fluence for bubble formation on the pulse duration of the laser. The bubble growth dynamics are also pulse-duration dependent for pulse lengths shorter than the thermal conduction time. For ultrashort pulses (shorter than the acoustic transit time across the absorber), the bubble dynamics approach a limiting growth trajectory. The process is a cooperative effect of both thermal and pressure interactions. We also find that variation of the absorber's mechanical parameters, such as the thermal expansion coefficient, can significantly alter not only the shock waves but also the bubble growth dynamics. © 2000 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 88 (1988), S. 6228-6232 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The electronic spin change of the iron in heme proteins that occurs upon the binding of carbon monoxide is investigated theoretically. A group theoretic approach is taken to determine an Fe electronic level scheme that is consistent with the experimentally observed temperature dependence of the rate of binding of CO. We show that a nearly degenerate ground state orbital doublet used with the standard theory for the spin transition involving second-order spin–orbit coupling gives a temperature dependence consistent with the experimental data. Measurements, using techniques independent of the recombination experiments, have produced evidence for this ground state orbital doublet, and we describe additional experimental methods for testing this model. The effect of this electronic transition on the nonadiabaticity of the reaction dynamics as a function of temperature is also calculated.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 85 (1986), S. 2227-2231 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The differences in force constant and dissociation energy between members of the redox pairs HO–/HO, HS–/HS, and HSe–/HSe are quantitatively explained in terms of the electrostatic and mechanical couplings of a classical model. This model gives an explicit physical description of factors that can cause changes in stretch force constant between oxidized and reduced states to be very small, a condition assumed in theoretical treatments of thermally activated electron transfer.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 82 (1985), S. 1212-1230 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: General properties of the MCD of cupric ions in ligand fields of low symmetry are described. C terms arising from spin-orbit coupling are dominant at liquid helium temperatures If spin-orbit coupling of the excited states to the ground state is negligible compared with spin-orbit coupling of the excited states among themselves, then the C values for the transitions sum to zero. It follows that nonvanishing of the sum of the C values over all transitions is due to spin-orbit coupling with the ground state. This net rotational offset is calculated for hybrid orbital "united atom'' models of the electronic states of the metal–ligand complexes. Simulations of C term spectra from hybrid atomic orbital models illustrate relations between MCD features and properties of low symmetry cupric sites.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    s.l. ; Stafa-Zurich, Switzerland
    Solid state phenomena Vol. 121-123 (Mar. 2007), p. 1025-1028 
    ISSN: 1662-9779
    Source: Scientific.Net: Materials Science & Technology / Trans Tech Publications Archiv 1984-2008
    Topics: Physics
    Notes: Detailed investigations have been carried out [1,2] on the response of microparticlesand nanoparticles to lasers of various pulse durations and energies. A first principles model hasbeen developed that allows the prediction of all thermo-mechanical effects that will be generatedfrom any laser pulse, such as pressure generation and phase changes. This theoretical work alsopredicts the thermo-mechanical effects transmitted to the surrounding transparent medium thatthe nanoparticles are immersed in, such as water or a solid polymer. The use of short enoughpulses produces shock fronts in the surrounding medium. We calculate how short the laser pulsemust be as a function of nanoparticles properties. We also show that measurements of pressurepeaks in the medium can be used to determine the thermo-mechanical properties of the absorbingnanoparticles, such as bulk modulus and thermal expansion coefficient. Because themeasurements can be made in the surrounding medium, they are easier to performexperimentally. Using this approach on particles of decreasing size, measurements of thepressure in the medium allow the determination of the size at which a nanoparticle is smallenough to deviate from its bulk behavior and manifest discrete atom, finite size effects. Thisallows the prediction of how the thermo-mechanical properties of nanoparticles will change astheir size decreases
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Bognor Regis [u.a.] : Wiley-Blackwell
    Journal of Polymer Science Part B: Polymer Physics 36 (1998), S. 2761-2769 
    ISSN: 0887-6266
    Keywords: protein folding ; Lyapunov exponents ; computer simulations ; nonlinear dynamics ; Physics ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A lattice model with Monte Carlo dynamics is used to carry out computer simulations of protein dynamics on a four α-helix bundle. The interaction energies in the model can be set so that either the helix bundle structure remains relatively stable or changed so that it unfolds. The computer model produces output that simulates experimental measurements relating to the structure. We show how this output can be used with analytical techniques of nonlinear dynamics to obtain important information about the complex underlying protein dynamics. Time-delay reconstruction plots of structural parameters of unfolding bundles resemble strange attractors in a space of dimension 3-4. We calculate Lyapunov exponents for these unfolding runs and find positive Lyapunov exponents implying chaotic dynamics. For stable runs the Lyapunov exponents are close to zero. We use these Lyapunov exponents to calculate the rate of loss of structural information during the unfolding process and show how the approach may be useful for investigating the folding dynamics of proteins. © 1998 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 36: 2761-2769, 1998
    Additional Material: 3 Ill.
    Type of Medium: Electronic Resource
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  • 8
    Publication Date: 1999-05-01
    Print ISSN: 1063-651X
    Electronic ISSN: 1095-3787
    Topics: Physics
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  • 9
    Publication Date: 2007-12-15
    Print ISSN: 0021-8979
    Electronic ISSN: 1089-7550
    Topics: Physics
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  • 10
    Publication Date: 2015-09-01
    Electronic ISSN: 2158-3226
    Topics: Physics
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